Wall clock time and date at job start Tue Mar 31 2020 11:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00418 * 2 1 4 4 H 1.48498 * 109.47538 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46744 * 299.99824 * 3 2 1 6 6 H 1.48501 * 109.47378 * 59.99358 * 3 2 1 7 7 C 1.37881 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99606 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49765 * 60.05924 * 9 7 2 11 11 C 1.53037 * 109.52364 * 180.14200 * 9 7 2 12 12 C 1.53043 * 109.53919 * 181.33412 * 11 9 7 13 13 C 1.53192 * 109.30860 * 298.63563 * 12 11 9 14 14 N 1.46926 * 108.77820 * 54.63429 * 13 12 11 15 15 C 1.34779 * 120.63044 * 126.36870 * 14 13 12 16 16 O 1.21277 * 119.99836 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99819 * 359.97438 * 15 14 13 18 18 O 1.42904 * 109.46768 * 179.97438 * 17 15 14 19 19 C 1.35909 * 116.99496 * 179.97438 * 18 17 15 20 20 C 1.38891 * 119.97372 * 359.72719 * 19 18 17 21 21 C 1.38298 * 120.29404 * 179.76060 * 20 19 18 22 22 C 1.37934 * 120.23175 * 0.51568 * 21 20 19 23 23 C 1.39834 * 119.94050 * 359.74522 * 22 21 20 24 24 C 1.47181 * 120.14767 * 180.02562 * 23 22 21 25 25 O 1.21250 * 120.00389 * 179.97438 * 24 23 22 26 26 C 1.38393 * 119.96797 * 180.02562 * 19 18 17 27 27 C 1.46925 * 118.73914 * 306.39111 * 14 13 12 28 28 H 0.97007 * 119.99876 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46383 * 301.35021 * 11 9 7 30 30 H 1.09002 * 109.46010 * 61.32699 * 11 9 7 31 31 H 1.09001 * 109.50069 * 178.68681 * 12 11 9 32 32 H 1.09000 * 109.49902 * 58.58363 * 12 11 9 33 33 H 1.09006 * 109.58809 * 294.84764 * 13 12 11 34 34 H 1.09002 * 109.58657 * 174.42750 * 13 12 11 35 35 H 1.08996 * 109.47482 * 299.99879 * 17 15 14 36 36 H 1.09003 * 109.47124 * 60.00250 * 17 15 14 37 37 H 1.07997 * 119.85686 * 359.97438 * 20 19 18 38 38 H 1.07999 * 119.88353 * 180.25608 * 21 20 19 39 39 H 1.08004 * 120.02890 * 179.75789 * 22 21 20 40 40 H 1.08000 * 119.99786 * 359.97435 * 24 23 22 41 41 H 1.08001 * 120.11171 * 0.02562 * 26 19 18 42 42 H 1.08998 * 109.58340 * 173.39503 * 27 14 13 43 43 H 1.09003 * 109.58494 * 293.68068 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6253 -2.5580 -0.8900 11 6 2.2443 -3.6633 0.0048 12 6 1.4798 -4.9887 -0.0288 13 6 0.6010 -5.0983 1.2212 14 7 -0.2572 -3.9085 1.3019 15 6 -1.5940 -4.0328 1.4200 16 8 -2.2916 -3.0429 1.4852 17 6 -2.2220 -5.4019 1.4699 18 8 -3.6394 -5.2714 1.5968 19 6 -4.3619 -6.4210 1.6556 20 6 -3.7179 -7.6496 1.5864 21 6 -4.4462 -8.8236 1.6505 22 6 -5.8195 -8.7831 1.7730 23 6 -6.4784 -7.5515 1.8381 24 6 -7.9435 -7.5030 1.9694 25 8 -8.5121 -6.4336 2.0261 26 6 -5.7393 -6.3662 1.7780 27 6 0.3696 -2.5806 1.2508 28 1 -0.4850 0.8401 -0.0004 29 1 2.8890 -3.5938 -0.8714 30 1 2.8529 -3.6181 0.9080 31 1 2.1881 -5.8169 -0.0493 32 1 0.8520 -5.0241 -0.9191 33 1 1.2324 -5.1542 2.1080 34 1 -0.0190 -5.9923 1.1547 35 1 -1.9872 -5.9429 0.5533 36 1 -1.8298 -5.9505 2.3262 37 1 -2.6434 -7.6885 1.4855 38 1 -3.9382 -9.7753 1.6002 39 1 -6.3853 -9.7019 1.8189 40 1 -8.5122 -8.4200 2.0153 41 1 -6.2415 -5.4113 1.8266 42 1 -0.4032 -1.8134 1.2038 43 1 0.9801 -2.4303 2.1412 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:12 Heat of formation + Delta-G solvation = -102.672382 kcal Electronic energy + Delta-G solvation = -25824.807034 eV Core-core repulsion = 22027.602011 eV Total energy + Delta-G solvation = -3797.205023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61957 -40.83277 -39.91092 -38.49060 -37.83644 -35.37390 -33.55965 -32.29910 -31.88965 -31.38143 -29.44506 -26.97530 -26.19332 -25.54372 -23.52506 -23.34572 -22.19203 -21.31289 -19.86887 -19.43715 -18.55768 -17.74733 -17.55103 -17.43090 -17.20956 -16.69521 -16.39243 -16.10316 -15.75192 -15.67423 -15.30260 -15.18525 -14.81410 -14.67562 -14.59368 -14.31409 -13.97725 -13.77733 -13.51136 -13.36488 -12.94222 -12.79347 -12.68822 -12.32317 -12.24139 -12.13693 -12.10379 -11.82303 -11.65106 -11.15380 -10.97041 -10.84447 -10.66479 -10.54129 -10.05896 -9.48827 -9.29325 -8.13870 -6.31319 -0.37674 0.41594 1.36762 1.38957 1.50036 1.50889 1.53130 1.59250 2.38538 2.55498 2.82156 3.14600 3.34495 3.43342 3.76665 3.88883 4.02476 4.06569 4.08537 4.14540 4.18432 4.27832 4.33846 4.44601 4.59616 4.69125 4.74828 4.78817 4.85600 4.91505 5.10481 5.24343 5.25294 5.27632 5.30432 5.34269 5.38995 5.51382 5.59870 5.71974 5.87815 5.97727 6.27849 6.32798 6.48779 6.57584 6.82988 7.21812 7.39681 8.89332 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021434 B = 0.002691 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.049397 B =10403.622308 C =11542.041503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.037 3.963 10 H -0.015 1.015 11 C -0.107 4.107 12 C -0.127 4.127 13 C 0.098 3.902 14 N -0.604 5.604 15 C 0.492 3.508 16 O -0.586 6.586 17 C 0.055 3.945 18 O -0.331 6.331 19 C 0.090 3.910 20 C -0.175 4.175 21 C -0.087 4.087 22 C -0.089 4.089 23 C -0.169 4.169 24 C 0.390 3.610 25 O -0.513 6.513 26 C -0.131 4.131 27 C 0.124 3.876 28 H 0.258 0.742 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 -28.369 4.225 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.018 3.982 10 H 0.003 0.997 11 C -0.145 4.145 12 C -0.165 4.165 13 C -0.023 4.023 14 N -0.337 5.337 15 C 0.280 3.720 16 O -0.466 6.466 17 C -0.023 4.023 18 O -0.245 6.245 19 C 0.045 3.955 20 C -0.193 4.193 21 C -0.104 4.104 22 C -0.107 4.107 23 C -0.170 4.170 24 C 0.252 3.748 25 O -0.388 6.388 26 C -0.150 4.150 27 C 0.002 3.998 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.177 0.823 38 H 0.193 0.807 39 H 0.200 0.800 40 H 0.188 0.812 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.882 -26.970 4.300 27.937 hybrid contribution 0.426 2.160 -0.198 2.210 sum -5.456 -24.810 4.102 25.732 Atomic orbital electron populations 1.70108 1.07545 1.27151 1.50830 1.25939 0.95514 1.03123 0.94707 0.85507 0.79405 0.79429 0.77341 1.18092 1.20984 1.21028 1.21576 0.93375 0.91460 1.50748 0.91735 1.18923 0.93145 0.94083 0.92054 0.99669 1.21528 0.97619 0.94223 1.01087 1.21935 0.99119 0.98128 0.97351 1.22184 0.93997 0.86534 0.99608 1.48468 1.05153 1.09410 1.70637 1.20946 0.82756 0.91389 0.76893 1.90737 1.62575 1.41909 1.51409 1.22667 0.79179 0.94192 1.06214 1.86176 1.19406 1.30316 1.88578 1.19259 0.91354 0.85850 0.98993 1.21919 1.02425 0.91099 1.03904 1.21486 0.94053 0.98612 0.96297 1.21815 0.95070 0.96998 0.96783 1.21077 0.97376 0.93351 1.05238 1.25009 0.87840 0.94151 0.67813 1.90559 1.73677 1.37439 1.37169 1.20750 0.91551 0.99584 1.03149 1.21731 0.97086 0.82709 0.98251 0.93268 0.92961 0.92222 0.87147 0.92942 0.89361 0.86433 0.85902 0.85162 0.82270 0.80743 0.80048 0.81184 0.87953 0.91072 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.27 11.39 21.45 0.24 -57.03 16 2 C 0.01 0.36 5.30 84.66 0.45 0.81 16 3 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.53 -29.36 8.57 25.60 0.22 -29.14 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.04 1.86 2.25 -11.46 -0.03 1.83 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 11 C -0.11 -3.90 5.11 30.62 0.16 -3.74 16 12 C -0.13 -3.28 6.08 30.67 0.19 -3.09 16 13 C 0.10 2.34 6.34 86.36 0.55 2.88 16 14 N -0.60 -23.15 2.97 -818.89 -2.43 -25.58 16 15 C 0.49 20.11 7.78 87.66 0.68 20.79 16 16 O -0.59 -32.26 15.91 16.02 0.25 -32.01 16 17 C 0.05 1.46 3.56 71.24 0.25 1.71 16 18 O -0.33 -11.17 9.67 -73.49 -0.71 -11.88 16 19 C 0.09 2.32 6.68 22.46 0.15 2.47 16 20 C -0.17 -2.66 9.03 22.44 0.20 -2.46 16 21 C -0.09 -0.78 10.02 22.21 0.22 -0.55 16 22 C -0.09 -0.79 9.79 22.58 0.22 -0.57 16 23 C -0.17 -2.97 5.87 -20.16 -0.12 -3.09 16 24 C 0.39 6.05 11.46 70.17 0.80 6.86 16 25 O -0.51 -14.08 17.16 -2.94 -0.05 -14.13 16 26 C -0.13 -3.55 9.54 22.69 0.22 -3.34 16 27 C 0.12 6.20 5.40 86.36 0.47 6.67 16 28 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.12 1.65 5.93 -2.39 -0.01 1.63 16 35 H 0.12 2.35 7.19 -2.39 -0.02 2.34 16 36 H 0.13 2.27 7.47 -2.39 -0.02 2.25 16 37 H 0.16 1.46 6.28 -2.91 -0.02 1.44 16 38 H 0.18 0.17 8.06 -2.91 -0.02 0.14 16 39 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 40 H 0.17 0.47 8.06 -2.91 -0.02 0.44 16 41 H 0.10 3.44 7.65 -2.91 -0.02 3.41 16 42 H 0.07 4.36 5.12 -2.39 -0.01 4.35 16 43 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -92.09 357.60 4.98 -87.11 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.02 Total: 8.51 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.63 Total: -1.96 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.19 Total: -82.61 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -0.51 Total: -58.02 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -92.09 4.98 -87.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.561 kcal (2) G-P(sol) polarization free energy of solvation -92.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds