Wall clock time and date at job start Tue Mar 31 2020 11:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86809 * 120.00065 * 2 1 4 4 H 1.48499 * 109.46982 * 274.99280 * 3 2 1 5 5 H 1.48494 * 109.46706 * 34.99069 * 3 2 1 6 6 H 1.48494 * 109.46968 * 154.98899 * 3 2 1 7 7 C 1.37877 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99983 * 189.54904 * 7 2 1 9 9 C 1.50696 * 120.00040 * 9.53926 * 7 2 1 10 10 H 1.09004 * 109.52585 * 305.34535 * 9 7 2 11 11 C 1.53036 * 109.49878 * 185.26628 * 9 7 2 12 12 C 1.53041 * 109.54114 * 178.68403 * 11 9 7 13 13 C 1.52765 * 109.38100 * 61.23890 * 12 11 9 14 14 N 1.46925 * 109.00825 * 305.58699 * 13 12 11 15 15 C 1.34772 * 120.63430 * 233.58522 * 14 13 12 16 16 O 1.21278 * 120.00207 * 179.72176 * 15 14 13 17 17 C 1.50704 * 119.99817 * 359.72257 * 15 14 13 18 18 O 1.42901 * 109.47156 * 180.02562 * 17 15 14 19 19 C 1.35913 * 116.99973 * 180.02562 * 18 17 15 20 20 C 1.38889 * 119.97012 * 359.71948 * 19 18 17 21 21 C 1.38288 * 120.29172 * 179.76259 * 20 19 18 22 22 C 1.37936 * 120.23683 * 0.51724 * 21 20 19 23 23 C 1.39836 * 119.93390 * 359.74210 * 22 21 20 24 24 C 1.47176 * 120.14289 * 180.02562 * 23 22 21 25 25 O 1.21258 * 120.00341 * 359.97438 * 24 23 22 26 26 C 1.38383 * 119.96866 * 179.97438 * 19 18 17 27 27 C 1.46927 * 118.73679 * 53.31357 * 14 13 12 28 28 H 0.97007 * 120.00390 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46203 * 298.70117 * 11 9 7 30 30 H 1.09002 * 109.46211 * 58.67780 * 11 9 7 31 31 H 1.09001 * 109.50321 * 181.31374 * 12 11 9 32 32 H 1.09003 * 109.49575 * 301.38124 * 12 11 9 33 33 H 1.08999 * 109.50678 * 185.71017 * 13 12 11 34 34 H 1.08997 * 109.43154 * 65.42524 * 13 12 11 35 35 H 1.08994 * 109.47202 * 60.00021 * 17 15 14 36 36 H 1.09003 * 109.46799 * 299.99975 * 17 15 14 37 37 H 1.08000 * 119.85085 * 0.02562 * 20 19 18 38 38 H 1.08006 * 119.88175 * 180.25943 * 21 20 19 39 39 H 1.07999 * 120.02903 * 179.72170 * 22 21 20 40 40 H 1.08010 * 120.00056 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.11891 * 359.96031 * 26 19 18 42 42 H 1.08998 * 109.59016 * 66.42844 * 27 14 13 43 43 H 1.08997 * 109.58924 * 186.85824 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5953 1.4120 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0733 -1.2006 0.1546 9 6 1.2666 -2.4900 -0.2174 10 1 0.4568 -2.5739 0.5074 11 6 2.2330 -3.6636 -0.0416 12 6 1.4776 -4.9812 -0.2293 13 6 0.8999 -5.0376 -1.6424 14 7 0.0861 -3.8366 -1.8749 15 6 -1.1904 -3.9426 -2.2943 16 8 -1.8533 -2.9438 -2.4778 17 6 -1.7938 -5.3024 -2.5353 18 8 -3.1463 -5.1528 -2.9717 19 6 -3.8395 -6.2920 -3.2343 20 6 -3.2263 -7.5285 -3.0799 21 6 -3.9269 -8.6920 -3.3404 22 6 -5.2376 -8.6330 -3.7661 23 6 -5.8629 -7.3930 -3.9300 24 6 -7.2613 -7.3247 -4.3835 25 8 -7.8738 -8.3450 -4.6163 26 6 -5.1541 -6.2185 -3.6603 27 6 0.6883 -2.5180 -1.6357 28 1 -0.4851 0.8401 0.0004 29 1 3.0290 -3.5927 -0.7829 30 1 2.6645 -3.6320 0.9588 31 1 2.1614 -5.8170 -0.0810 32 1 0.6662 -5.0419 0.4960 33 1 0.2775 -5.9264 -1.7460 34 1 1.7143 -5.0728 -2.3659 35 1 -1.7718 -5.8788 -1.6104 36 1 -1.2205 -5.8236 -3.3020 37 1 -2.1990 -7.5818 -2.7508 38 1 -3.4447 -9.6502 -3.2141 39 1 -5.7802 -9.5436 -3.9730 40 1 -7.7422 -6.3657 -4.5089 41 1 -5.6308 -5.2573 -3.7840 42 1 1.4851 -2.3435 -2.3587 43 1 -0.0736 -1.7448 -1.7348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:16 Heat of formation + Delta-G solvation = -81.271210 kcal Electronic energy + Delta-G solvation = -25739.231505 eV Core-core repulsion = 21942.954506 eV Total energy + Delta-G solvation = -3796.276999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65547 -39.69735 -38.98562 -37.33376 -36.56235 -33.50832 -31.95956 -31.80850 -30.68497 -30.03303 -28.29690 -25.30895 -25.10091 -24.17556 -22.93003 -21.97991 -21.19628 -19.91808 -18.52703 -18.39853 -17.12395 -16.48290 -16.45646 -16.31476 -16.01884 -15.91220 -15.19253 -14.68585 -14.56300 -14.50889 -14.21987 -14.04802 -13.85175 -13.46193 -13.23563 -12.79182 -12.70654 -12.58348 -12.15439 -12.10172 -12.00909 -11.46780 -11.24143 -11.08580 -10.99245 -10.62839 -10.48795 -10.33283 -10.15452 -9.99808 -9.46339 -9.39241 -9.15426 -9.01955 -8.52730 -8.45409 -7.93544 -6.07510 -4.12596 0.28050 1.11013 2.12329 2.62091 2.97698 3.28306 3.36469 3.37925 3.48556 3.70570 3.94482 4.38698 4.40143 4.59245 4.65651 4.83850 4.85866 4.96893 5.00057 5.09714 5.11738 5.12122 5.24334 5.35599 5.51975 5.58439 5.83669 5.86570 5.97087 6.03121 6.07871 6.19758 6.28878 6.48144 6.52099 6.72517 6.86202 6.94998 7.04006 7.05655 7.15835 7.52203 7.77290 7.89600 8.00597 8.30964 8.64244 8.91860 9.52338 11.00349 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.002561 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.314975 B =10928.552787 C =11893.663495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.038 3.962 10 H 0.037 0.963 11 C -0.111 4.111 12 C -0.136 4.136 13 C 0.107 3.893 14 N -0.602 5.602 15 C 0.508 3.492 16 O -0.514 6.514 17 C 0.041 3.959 18 O -0.284 6.284 19 C 0.122 3.878 20 C -0.179 4.179 21 C -0.093 4.093 22 C -0.103 4.103 23 C -0.156 4.156 24 C 0.387 3.613 25 O -0.460 6.460 26 C -0.099 4.099 27 C 0.119 3.881 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.144 0.856 42 H 0.048 0.952 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 -17.466 -6.607 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.055 0.945 11 C -0.148 4.148 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.337 5.337 15 C 0.292 3.708 16 O -0.389 6.389 17 C -0.037 4.037 18 O -0.196 6.196 19 C 0.076 3.924 20 C -0.198 4.198 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.157 4.157 24 C 0.246 3.754 25 O -0.333 6.333 26 C -0.118 4.118 27 C -0.001 4.001 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.162 0.838 42 H 0.066 0.934 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.267 -17.123 -6.849 19.478 hybrid contribution 0.919 0.749 0.166 1.197 sum -5.348 -16.373 -6.683 18.476 Atomic orbital electron populations 1.69973 1.05876 1.27002 1.48480 1.25047 0.94787 0.99312 0.94671 0.86633 0.79964 0.83675 0.78101 1.20582 1.21231 1.19860 1.21025 0.94147 0.90465 1.50669 0.92286 1.18987 0.94416 0.92483 0.92215 0.94530 1.21627 0.98569 0.93918 1.00710 1.21893 1.00203 0.99444 0.95832 1.21610 0.95055 0.86918 0.98019 1.48423 1.10703 1.09340 1.65223 1.19784 0.82442 0.89551 0.78976 1.90763 1.59848 1.37961 1.50365 1.22683 0.81867 0.98319 1.00859 1.86224 1.24525 1.27905 1.80994 1.18989 0.92027 0.85480 0.95909 1.21580 1.01294 0.92101 1.04784 1.20939 0.94170 0.98031 0.97946 1.21312 0.94846 0.97411 0.98566 1.20720 0.97299 0.93429 1.04282 1.24107 0.86067 0.93820 0.71451 1.90520 1.65428 1.40107 1.37280 1.20665 0.91842 0.98911 1.00388 1.22276 0.97798 0.81127 0.98927 0.92632 0.93136 0.92744 0.91946 0.92011 0.91529 0.91509 0.89249 0.89403 0.84880 0.85083 0.84931 0.87382 0.83834 0.93370 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 12.21 55.43 0.68 -24.60 16 2 C 0.07 1.78 5.24 -17.82 -0.09 1.69 16 3 Si 0.89 20.88 29.55 -169.99 -5.02 15.85 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.78 8.48 -34.44 -0.29 -14.07 16 8 H 0.06 1.52 7.77 -52.48 -0.41 1.11 16 9 C 0.04 0.90 2.11 -91.66 -0.19 0.70 16 10 H 0.04 0.98 8.09 -51.93 -0.42 0.56 16 11 C -0.11 -2.04 5.11 -26.69 -0.14 -2.18 16 12 C -0.14 -1.94 6.07 -26.83 -0.16 -2.10 16 13 C 0.11 1.43 6.31 -3.93 -0.02 1.41 16 14 N -0.60 -11.02 2.98 -173.03 -0.52 -11.54 16 15 C 0.51 9.53 7.78 -10.99 -0.09 9.44 16 16 O -0.51 -12.33 15.91 -14.35 -0.23 -12.56 16 17 C 0.04 0.54 3.57 36.01 0.13 0.67 16 18 O -0.28 -4.19 9.67 -39.38 -0.38 -4.57 16 19 C 0.12 1.43 6.68 -39.29 -0.26 1.17 16 20 C -0.18 -1.68 9.04 -39.32 -0.36 -2.03 16 21 C -0.09 -0.77 10.02 -39.67 -0.40 -1.17 16 22 C -0.10 -0.95 9.59 -39.09 -0.38 -1.32 16 23 C -0.16 -1.47 5.87 -105.09 -0.62 -2.08 16 24 C 0.39 3.25 11.46 34.36 0.39 3.65 16 25 O -0.46 -5.41 17.16 5.58 0.10 -5.31 16 26 C -0.10 -1.02 9.73 -38.94 -0.38 -1.40 16 27 C 0.12 2.70 5.48 -3.71 -0.02 2.68 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.64 5.93 -51.93 -0.31 0.33 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.96 7.20 -51.93 -0.37 0.59 16 36 H 0.09 0.88 7.46 -51.93 -0.39 0.49 16 37 H 0.13 0.98 6.28 -52.49 -0.33 0.65 16 38 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.13 1.13 7.64 -52.49 -0.40 0.73 16 40 H 0.11 0.52 8.06 -52.48 -0.42 0.10 16 41 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.11 2.88 5.92 -51.93 -0.31 2.58 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -33.74 358.96 -8.71 -42.46 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.88 Total: -0.19 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.87 Total: -4.96 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.16 Total: -36.14 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.51 Total: -22.44 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.74 -8.71 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.816 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds