Wall clock time and date at job start Tue Mar 31 2020 11:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86809 * 120.00065 * 2 1 4 4 H 1.48499 * 109.46982 * 274.99280 * 3 2 1 5 5 H 1.48494 * 109.46706 * 34.99069 * 3 2 1 6 6 H 1.48494 * 109.46968 * 154.98899 * 3 2 1 7 7 C 1.37877 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99983 * 189.54904 * 7 2 1 9 9 C 1.50696 * 120.00040 * 9.53926 * 7 2 1 10 10 H 1.09004 * 109.52585 * 305.34535 * 9 7 2 11 11 C 1.53036 * 109.49878 * 185.26628 * 9 7 2 12 12 C 1.53041 * 109.54114 * 178.68403 * 11 9 7 13 13 C 1.52765 * 109.38100 * 61.23890 * 12 11 9 14 14 N 1.46925 * 109.00825 * 305.58699 * 13 12 11 15 15 C 1.34772 * 120.63430 * 233.58522 * 14 13 12 16 16 O 1.21278 * 120.00207 * 179.72176 * 15 14 13 17 17 C 1.50704 * 119.99817 * 359.72257 * 15 14 13 18 18 O 1.42901 * 109.47156 * 180.02562 * 17 15 14 19 19 C 1.35913 * 116.99973 * 180.02562 * 18 17 15 20 20 C 1.38889 * 119.97012 * 359.71948 * 19 18 17 21 21 C 1.38288 * 120.29172 * 179.76259 * 20 19 18 22 22 C 1.37936 * 120.23683 * 0.51724 * 21 20 19 23 23 C 1.39836 * 119.93390 * 359.74210 * 22 21 20 24 24 C 1.47176 * 120.14289 * 180.02562 * 23 22 21 25 25 O 1.21258 * 120.00341 * 359.97438 * 24 23 22 26 26 C 1.38383 * 119.96866 * 179.97438 * 19 18 17 27 27 C 1.46927 * 118.73679 * 53.31357 * 14 13 12 28 28 H 0.97007 * 120.00390 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46203 * 298.70117 * 11 9 7 30 30 H 1.09002 * 109.46211 * 58.67780 * 11 9 7 31 31 H 1.09001 * 109.50321 * 181.31374 * 12 11 9 32 32 H 1.09003 * 109.49575 * 301.38124 * 12 11 9 33 33 H 1.08999 * 109.50678 * 185.71017 * 13 12 11 34 34 H 1.08997 * 109.43154 * 65.42524 * 13 12 11 35 35 H 1.08994 * 109.47202 * 60.00021 * 17 15 14 36 36 H 1.09003 * 109.46799 * 299.99975 * 17 15 14 37 37 H 1.08000 * 119.85085 * 0.02562 * 20 19 18 38 38 H 1.08006 * 119.88175 * 180.25943 * 21 20 19 39 39 H 1.07999 * 120.02903 * 179.72170 * 22 21 20 40 40 H 1.08010 * 120.00056 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.11891 * 359.96031 * 26 19 18 42 42 H 1.08998 * 109.59016 * 66.42844 * 27 14 13 43 43 H 1.08997 * 109.58924 * 186.85824 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5953 1.4120 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0733 -1.2006 0.1546 9 6 1.2666 -2.4900 -0.2174 10 1 0.4568 -2.5739 0.5074 11 6 2.2330 -3.6636 -0.0416 12 6 1.4776 -4.9812 -0.2293 13 6 0.8999 -5.0376 -1.6424 14 7 0.0861 -3.8366 -1.8749 15 6 -1.1904 -3.9426 -2.2943 16 8 -1.8533 -2.9438 -2.4778 17 6 -1.7938 -5.3024 -2.5353 18 8 -3.1463 -5.1528 -2.9717 19 6 -3.8395 -6.2920 -3.2343 20 6 -3.2263 -7.5285 -3.0799 21 6 -3.9269 -8.6920 -3.3404 22 6 -5.2376 -8.6330 -3.7661 23 6 -5.8629 -7.3930 -3.9300 24 6 -7.2613 -7.3247 -4.3835 25 8 -7.8738 -8.3450 -4.6163 26 6 -5.1541 -6.2185 -3.6603 27 6 0.6883 -2.5180 -1.6357 28 1 -0.4851 0.8401 0.0004 29 1 3.0290 -3.5927 -0.7829 30 1 2.6645 -3.6320 0.9588 31 1 2.1614 -5.8170 -0.0810 32 1 0.6662 -5.0419 0.4960 33 1 0.2775 -5.9264 -1.7460 34 1 1.7143 -5.0728 -2.3659 35 1 -1.7718 -5.8788 -1.6104 36 1 -1.2205 -5.8236 -3.3020 37 1 -2.1990 -7.5818 -2.7508 38 1 -3.4447 -9.6502 -3.2141 39 1 -5.7802 -9.5436 -3.9730 40 1 -7.7422 -6.3657 -4.5089 41 1 -5.6308 -5.2573 -3.7840 42 1 1.4851 -2.3435 -2.3587 43 1 -0.0736 -1.7448 -1.7348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:15 Heat of formation + Delta-G solvation = -102.252646 kcal Electronic energy + Delta-G solvation = -25740.141328 eV Core-core repulsion = 21942.954506 eV Total energy + Delta-G solvation = -3797.186822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60669 -40.83651 -39.93842 -38.47622 -37.79308 -35.33508 -33.53780 -32.54330 -31.88944 -31.24477 -29.43270 -26.94742 -26.22473 -25.41359 -23.64416 -23.46743 -22.12255 -21.31466 -19.87055 -19.28975 -18.57657 -17.90979 -17.42489 -17.40257 -17.06665 -16.74211 -16.57699 -16.28863 -15.72862 -15.46383 -15.27588 -15.18123 -14.77991 -14.68847 -14.56308 -14.32090 -13.95326 -13.80914 -13.52934 -13.36275 -12.88477 -12.81084 -12.73751 -12.35222 -12.26126 -12.19474 -12.10489 -11.80864 -11.63805 -11.21439 -10.87992 -10.85255 -10.63065 -10.52479 -10.07285 -9.48681 -9.30942 -8.16345 -6.27873 -0.41010 0.38839 1.38416 1.40914 1.45168 1.50816 1.53566 1.60842 2.40226 2.55929 2.78672 3.15373 3.31143 3.42494 3.77949 3.88880 4.04120 4.05885 4.09846 4.17972 4.20697 4.28348 4.34922 4.42527 4.53293 4.60420 4.73351 4.79700 4.86088 4.93442 5.09811 5.15652 5.20395 5.28180 5.29617 5.32425 5.40939 5.52720 5.58970 5.63861 5.88409 5.93260 6.28012 6.33018 6.40434 6.57058 6.86383 7.22183 7.41372 8.90726 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.002561 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.314975 B =10928.552787 C =11893.663495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.037 3.963 10 H -0.010 1.010 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.099 3.901 14 N -0.604 5.604 15 C 0.495 3.505 16 O -0.584 6.584 17 C 0.053 3.947 18 O -0.320 6.320 19 C 0.095 3.905 20 C -0.173 4.173 21 C -0.089 4.089 22 C -0.110 4.110 23 C -0.165 4.165 24 C 0.395 3.605 25 O -0.497 6.497 26 C -0.108 4.108 27 C 0.131 3.869 28 H 0.259 0.741 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.049 0.951 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 -20.726 -7.065 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.017 3.983 10 H 0.008 0.992 11 C -0.144 4.144 12 C -0.167 4.167 13 C -0.022 4.022 14 N -0.337 5.337 15 C 0.283 3.717 16 O -0.464 6.464 17 C -0.024 4.024 18 O -0.234 6.234 19 C 0.050 3.950 20 C -0.192 4.192 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.166 4.166 24 C 0.256 3.744 25 O -0.372 6.372 26 C -0.127 4.127 27 C 0.009 3.991 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.067 0.933 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.515 -20.436 -7.297 22.165 hybrid contribution 0.391 1.716 0.326 1.790 sum -4.124 -18.720 -6.971 20.397 Atomic orbital electron populations 1.70144 1.07634 1.27337 1.50364 1.25875 0.95399 1.02945 0.94628 0.85634 0.79109 0.79472 0.78053 1.20298 1.21464 1.18370 1.21511 0.94482 0.91936 1.49455 0.91882 1.18912 0.94011 0.93991 0.91352 0.99161 1.21525 0.97905 0.94218 1.00789 1.21869 1.00317 0.98202 0.96292 1.22077 0.96041 0.86208 0.97839 1.48429 1.11359 1.09288 1.64621 1.20899 0.82013 0.91371 0.77406 1.90728 1.61512 1.40924 1.53246 1.22661 0.81843 0.94197 1.03729 1.86166 1.25296 1.29994 1.81914 1.19237 0.92462 0.85568 0.97723 1.21872 1.02471 0.91139 1.03677 1.21286 0.93652 0.99104 0.96636 1.21581 0.95608 0.97476 0.98196 1.20872 0.97865 0.93352 1.04540 1.24605 0.85560 0.94557 0.69709 1.90514 1.66029 1.41537 1.39132 1.20806 0.91939 0.99468 1.00472 1.21638 0.96203 0.82855 0.98427 0.93205 0.92123 0.93213 0.87303 0.93023 0.86442 0.89236 0.86060 0.85195 0.82167 0.82018 0.84558 0.83685 0.83508 0.93302 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.01 12.21 21.45 0.26 -55.75 16 2 C 0.01 0.63 5.24 84.66 0.44 1.08 16 3 Si 0.95 44.01 29.55 68.60 2.03 46.04 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.54 -28.91 8.48 25.60 0.22 -28.69 16 8 H 0.06 3.27 7.77 -2.91 -0.02 3.24 16 9 C 0.04 1.78 2.11 -11.46 -0.02 1.75 16 10 H -0.01 -0.56 8.09 -2.38 -0.02 -0.58 16 11 C -0.11 -3.79 5.11 30.62 0.16 -3.64 16 12 C -0.13 -3.21 6.07 30.53 0.19 -3.02 16 13 C 0.10 2.22 6.31 86.22 0.54 2.76 16 14 N -0.60 -21.67 2.98 -819.74 -2.44 -24.11 16 15 C 0.50 18.59 7.78 87.66 0.68 19.27 16 16 O -0.58 -29.70 15.91 16.01 0.25 -29.44 16 17 C 0.05 1.25 3.57 71.24 0.25 1.50 16 18 O -0.32 -9.13 9.67 -73.54 -0.71 -9.84 16 19 C 0.09 2.05 6.68 22.46 0.15 2.20 16 20 C -0.17 -2.60 9.04 22.44 0.20 -2.40 16 21 C -0.09 -1.16 10.02 22.21 0.22 -0.94 16 22 C -0.11 -1.79 9.59 22.58 0.22 -1.58 16 23 C -0.17 -2.89 5.87 -20.17 -0.12 -3.01 16 24 C 0.39 6.21 11.46 70.17 0.80 7.01 16 25 O -0.50 -11.35 17.16 -2.96 -0.05 -11.40 16 26 C -0.11 -2.13 9.73 22.68 0.22 -1.90 16 27 C 0.13 6.20 5.48 86.36 0.47 6.68 16 28 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.12 1.48 5.93 -2.39 -0.01 1.47 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.12 2.05 7.20 -2.39 -0.02 2.03 16 36 H 0.13 1.92 7.46 -2.39 -0.02 1.91 16 37 H 0.16 1.42 6.28 -2.91 -0.02 1.40 16 38 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.14 2.09 7.64 -2.91 -0.02 2.07 16 40 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.05 3.08 5.92 -2.39 -0.01 3.07 16 Total: -1.00 -82.81 358.96 4.99 -77.82 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.02 Total: 9.60 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 4.63 Total: -2.92 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -2.18 Total: -79.86 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.51 Total: -50.67 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -82.81 4.99 -77.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.433 kcal (2) G-P(sol) polarization free energy of solvation -82.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds