Wall clock time and date at job start Tue Mar 31 2020 10:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48499 * 109.46860 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46777 * 299.99698 * 3 2 1 6 6 H 1.48498 * 109.47252 * 59.99957 * 3 2 1 7 7 C 1.37874 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47041 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47095 * 180.02562 * 10 9 7 12 12 C 1.34226 * 116.99805 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00079 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99809 * 180.02562 * 12 11 10 15 15 H 1.08994 * 110.88684 * 56.11439 * 14 12 11 16 16 C 1.55158 * 111.00260 * 179.97438 * 14 12 11 17 17 C 1.54316 * 102.94324 * 153.57238 * 16 14 12 18 18 N 1.47025 * 107.27160 * 337.80619 * 17 16 14 19 19 C 1.34778 * 125.65236 * 178.89256 * 18 17 16 20 20 O 1.21551 * 120.00429 * 174.99064 * 19 18 17 21 21 C 1.47854 * 119.99738 * 354.99084 * 19 18 17 22 22 C 1.39581 * 120.14119 * 7.77526 * 21 19 18 23 23 C 1.37963 * 119.84900 * 179.78960 * 22 21 19 24 24 C 1.38363 * 120.14333 * 0.48227 * 23 22 21 25 25 C 1.38358 * 120.29395 * 359.74562 * 24 23 22 26 26 C 1.37959 * 120.14683 * 0.02562 * 25 24 23 27 27 C 1.47424 * 108.70464 * 358.94078 * 18 17 16 28 28 H 0.97002 * 119.99546 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47269 * 59.99436 * 9 7 2 30 30 H 1.09001 * 109.46856 * 299.99463 * 9 7 2 31 31 H 1.08994 * 109.46842 * 59.99965 * 10 9 7 32 32 H 1.09004 * 109.46877 * 300.00090 * 10 9 7 33 33 H 1.08996 * 110.72170 * 271.93604 * 16 14 12 34 34 H 1.09003 * 110.72375 * 35.21154 * 16 14 12 35 35 H 1.09001 * 109.88388 * 97.21824 * 17 16 14 36 36 H 1.08997 * 109.88981 * 218.38890 * 17 16 14 37 37 H 1.07999 * 120.07631 * 359.97438 * 22 21 19 38 38 H 1.08001 * 119.92470 * 180.22551 * 23 22 21 39 39 H 1.07995 * 119.84841 * 179.72006 * 24 23 22 40 40 H 1.08000 * 119.92735 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.07452 * 179.97438 * 26 25 24 42 42 H 1.09002 * 110.36369 * 265.29499 * 27 18 17 43 43 H 1.08990 * 110.37149 * 142.96661 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5192 -4.9196 -0.0001 12 6 2.2503 -6.0453 0.0004 13 8 3.4568 -5.9820 0.0008 14 6 1.5661 -7.3880 -0.0008 15 1 0.8847 -7.4762 -0.8469 16 6 2.6042 -8.5411 -0.0007 17 6 1.8341 -9.6995 0.6676 18 7 0.7498 -9.1024 1.4610 19 6 -0.1636 -9.7835 2.1809 20 8 -0.9621 -9.1833 2.8735 21 6 -0.1943 -11.2608 2.1283 22 6 0.8167 -11.9597 1.4668 23 6 0.7844 -13.3383 1.4252 24 6 -0.2525 -14.0276 2.0287 25 6 -1.2603 -13.3406 2.6819 26 6 -1.2374 -11.9622 2.7350 27 6 0.8263 -7.6353 1.3377 28 1 -0.4849 0.8401 0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6241 -2.5566 0.8904 31 1 2.8719 -3.6043 0.8905 32 1 2.8719 -3.6043 -0.8895 33 1 2.8886 -8.8042 -1.0195 34 1 3.4809 -8.2708 0.5879 35 1 1.4165 -10.3561 -0.0957 36 1 2.5028 -10.2626 1.3185 37 1 1.6240 -11.4227 0.9912 38 1 1.5680 -13.8805 0.9168 39 1 -0.2754 -15.1066 1.9893 40 1 -2.0666 -13.8846 3.1514 41 1 -2.0249 -11.4271 3.2449 42 1 1.3932 -7.2140 2.1679 43 1 -0.1743 -7.2048 1.3032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859941005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:05 Heat of formation + Delta-G solvation = -77.646712 kcal Electronic energy + Delta-G solvation = -25254.143111 eV Core-core repulsion = 21458.023282 eV Total energy + Delta-G solvation = -3796.119829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05970 -40.08433 -38.69996 -37.56915 -36.14457 -33.39262 -32.89294 -31.37194 -31.19596 -30.41287 -29.43852 -25.78234 -25.04902 -23.56299 -22.89026 -22.34304 -20.97490 -20.27008 -20.10922 -17.81819 -17.77076 -16.84630 -16.76100 -16.20929 -16.00846 -15.87409 -15.43637 -14.82229 -14.74188 -14.51082 -14.37108 -13.98494 -13.93391 -13.41387 -13.25345 -13.00274 -12.84100 -12.61981 -12.42901 -12.27937 -11.78563 -11.61824 -11.27479 -11.24418 -11.04826 -11.00623 -10.80134 -10.70680 -10.36292 -10.14397 -9.70184 -9.65309 -9.40720 -9.38659 -9.30261 -8.99481 -8.46223 -6.11740 -4.16384 0.48621 0.96037 2.29303 2.55395 2.56791 3.08750 3.26706 3.34323 3.39033 3.49310 3.91689 4.09858 4.28406 4.37832 4.50386 4.54500 4.59947 4.67201 4.84458 4.86687 4.96282 4.99181 5.08421 5.24101 5.24887 5.37005 5.47211 5.52660 5.57070 5.64035 5.73454 5.86204 5.92973 6.01474 6.03258 6.04306 6.04354 6.47715 6.59549 6.89572 7.12084 7.53335 7.59985 7.83893 7.84130 8.09196 8.22094 8.89408 9.48238 10.99710 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.002112 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.820753 B =13253.327314 C =13987.826784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.075 3.925 11 O -0.353 6.353 12 C 0.468 3.532 13 O -0.512 6.512 14 C -0.100 4.100 15 H 0.122 0.878 16 C -0.120 4.120 17 C 0.090 3.910 18 N -0.614 5.614 19 C 0.573 3.427 20 O -0.529 6.529 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.097 4.097 25 C -0.129 4.129 26 C -0.060 4.060 27 C 0.122 3.878 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.160 0.840 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 -30.056 1.053 30.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.002 3.998 11 O -0.268 6.268 12 C 0.310 3.690 13 O -0.401 6.401 14 C -0.120 4.120 15 H 0.140 0.860 16 C -0.157 4.157 17 C -0.033 4.033 18 N -0.348 5.348 19 C 0.364 3.636 20 O -0.406 6.406 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.115 4.115 25 C -0.147 4.147 26 C -0.079 4.079 27 C -0.001 4.001 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.177 0.823 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.097 0.903 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.083 -29.566 1.481 29.623 hybrid contribution 0.557 0.939 -0.075 1.094 sum 1.639 -28.628 1.407 28.709 Atomic orbital electron populations 1.69986 1.06085 1.26914 1.49731 1.24993 0.94929 0.99427 0.94864 0.86414 0.80025 0.83144 0.77716 1.19598 1.20823 1.20818 1.21005 0.93197 0.90084 1.52207 0.92197 1.19187 0.94196 0.89005 0.98974 1.23695 0.96412 0.78622 1.01023 1.86543 1.42353 1.15808 1.82127 1.22918 0.86311 0.86853 0.72940 1.90637 1.15579 1.88168 1.45683 1.22181 0.98838 0.90085 1.00857 0.85976 1.22734 0.97953 0.92022 1.03034 1.22650 0.89044 0.96631 0.94949 1.48292 1.30189 1.07384 1.48963 1.18004 0.79729 0.86911 0.78996 1.90817 1.39788 1.70171 1.39871 1.19860 0.98049 0.92343 1.03020 1.22764 0.98946 0.95254 0.97217 1.21186 0.98986 0.94111 1.00456 1.21426 0.93878 1.00259 0.95969 1.21176 0.99377 0.93940 1.00254 1.21321 0.96867 0.94057 0.95663 1.22107 1.02508 0.80066 0.95390 0.92730 0.95316 0.95253 0.92187 0.92197 0.88694 0.88512 0.89741 0.89727 0.82286 0.85392 0.85663 0.85297 0.84632 0.90311 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 10 C 0.07 1.63 5.40 37.16 0.20 1.83 16 11 O -0.35 -6.76 10.22 -39.25 -0.40 -7.16 16 12 C 0.47 7.49 7.27 36.01 0.26 7.75 16 13 O -0.51 -9.26 15.46 -18.75 -0.29 -9.55 16 14 C -0.10 -1.11 3.54 -89.62 -0.32 -1.43 16 15 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.12 -0.99 6.08 -24.90 -0.15 -1.14 16 17 C 0.09 0.63 4.87 -3.07 -0.01 0.61 16 18 N -0.61 -6.59 3.33 -175.14 -0.58 -7.17 16 19 C 0.57 7.23 7.81 -12.32 -0.10 7.13 16 20 O -0.53 -8.67 16.67 5.32 0.09 -8.58 16 21 C -0.13 -1.30 5.87 -104.96 -0.62 -1.92 16 22 C -0.12 -0.91 8.60 -39.18 -0.34 -1.24 16 23 C -0.13 -0.78 10.03 -39.64 -0.40 -1.18 16 24 C -0.10 -0.58 10.04 -39.49 -0.40 -0.98 16 25 C -0.13 -0.91 10.03 -39.64 -0.40 -1.30 16 26 C -0.06 -0.56 9.59 -39.18 -0.38 -0.94 16 27 C 0.12 1.46 6.35 -2.53 -0.02 1.45 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 32 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.91 7.39 -51.93 -0.38 0.53 16 35 H 0.08 0.43 6.67 -51.93 -0.35 0.09 16 36 H 0.08 0.46 6.80 -51.93 -0.35 0.11 16 37 H 0.16 0.85 2.77 -57.04 -0.16 0.69 16 38 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.14 1.30 7.67 -52.49 -0.40 0.90 16 42 H 0.08 1.01 8.03 -51.93 -0.42 0.59 16 43 H 0.10 1.28 8.09 -51.93 -0.42 0.87 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -34.31 361.72 -9.06 -43.37 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.83 Total: -2.74 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -3.21 Total: -4.36 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.15 Total: -32.81 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.60 Total: -25.28 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.31 -9.06 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859941005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.277 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds