Wall clock time and date at job start Tue Mar 31 2020 10:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48499 * 109.46860 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46777 * 299.99698 * 3 2 1 6 6 H 1.48498 * 109.47252 * 59.99957 * 3 2 1 7 7 C 1.37874 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47041 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47095 * 180.02562 * 10 9 7 12 12 C 1.34226 * 116.99805 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00079 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99809 * 180.02562 * 12 11 10 15 15 H 1.08994 * 110.88684 * 56.11439 * 14 12 11 16 16 C 1.55158 * 111.00260 * 179.97438 * 14 12 11 17 17 C 1.54316 * 102.94324 * 153.57238 * 16 14 12 18 18 N 1.47025 * 107.27160 * 337.80619 * 17 16 14 19 19 C 1.34778 * 125.65236 * 178.89256 * 18 17 16 20 20 O 1.21551 * 120.00429 * 174.99064 * 19 18 17 21 21 C 1.47854 * 119.99738 * 354.99084 * 19 18 17 22 22 C 1.39581 * 120.14119 * 7.77526 * 21 19 18 23 23 C 1.37963 * 119.84900 * 179.78960 * 22 21 19 24 24 C 1.38363 * 120.14333 * 0.48227 * 23 22 21 25 25 C 1.38358 * 120.29395 * 359.74562 * 24 23 22 26 26 C 1.37959 * 120.14683 * 0.02562 * 25 24 23 27 27 C 1.47424 * 108.70464 * 358.94078 * 18 17 16 28 28 H 0.97002 * 119.99546 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47269 * 59.99436 * 9 7 2 30 30 H 1.09001 * 109.46856 * 299.99463 * 9 7 2 31 31 H 1.08994 * 109.46842 * 59.99965 * 10 9 7 32 32 H 1.09004 * 109.46877 * 300.00090 * 10 9 7 33 33 H 1.08996 * 110.72170 * 271.93604 * 16 14 12 34 34 H 1.09003 * 110.72375 * 35.21154 * 16 14 12 35 35 H 1.09001 * 109.88388 * 97.21824 * 17 16 14 36 36 H 1.08997 * 109.88981 * 218.38890 * 17 16 14 37 37 H 1.07999 * 120.07631 * 359.97438 * 22 21 19 38 38 H 1.08001 * 119.92470 * 180.22551 * 23 22 21 39 39 H 1.07995 * 119.84841 * 179.72006 * 24 23 22 40 40 H 1.08000 * 119.92735 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.07452 * 179.97438 * 26 25 24 42 42 H 1.09002 * 110.36369 * 265.29499 * 27 18 17 43 43 H 1.08990 * 110.37149 * 142.96661 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5192 -4.9196 -0.0001 12 6 2.2503 -6.0453 0.0004 13 8 3.4568 -5.9820 0.0008 14 6 1.5661 -7.3880 -0.0008 15 1 0.8847 -7.4762 -0.8469 16 6 2.6042 -8.5411 -0.0007 17 6 1.8341 -9.6995 0.6676 18 7 0.7498 -9.1024 1.4610 19 6 -0.1636 -9.7835 2.1809 20 8 -0.9621 -9.1833 2.8735 21 6 -0.1943 -11.2608 2.1283 22 6 0.8167 -11.9597 1.4668 23 6 0.7844 -13.3383 1.4252 24 6 -0.2525 -14.0276 2.0287 25 6 -1.2603 -13.3406 2.6819 26 6 -1.2374 -11.9622 2.7350 27 6 0.8263 -7.6353 1.3377 28 1 -0.4849 0.8401 0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6241 -2.5566 0.8904 31 1 2.8719 -3.6043 0.8905 32 1 2.8719 -3.6043 -0.8895 33 1 2.8886 -8.8042 -1.0195 34 1 3.4809 -8.2708 0.5879 35 1 1.4165 -10.3561 -0.0957 36 1 2.5028 -10.2626 1.3185 37 1 1.6240 -11.4227 0.9912 38 1 1.5680 -13.8805 0.9168 39 1 -0.2754 -15.1066 1.9893 40 1 -2.0666 -13.8846 3.1514 41 1 -2.0249 -11.4271 3.2449 42 1 1.3932 -7.2140 2.1679 43 1 -0.1743 -7.2048 1.3032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859941005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:05 Heat of formation + Delta-G solvation = -97.887488 kcal Electronic energy + Delta-G solvation = -25255.020817 eV Core-core repulsion = 21458.023282 eV Total energy + Delta-G solvation = -3796.997535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03476 -41.26402 -39.41105 -38.58926 -37.61463 -35.47326 -33.78145 -32.36301 -31.93658 -31.84125 -30.31842 -27.31303 -26.32167 -24.56861 -23.56600 -23.18371 -22.74314 -21.34252 -21.00668 -19.16257 -18.54217 -18.38006 -17.79736 -17.51301 -17.39672 -16.83545 -16.64838 -16.33891 -15.67786 -15.47680 -15.12515 -14.95261 -14.62267 -14.52743 -14.43480 -14.29407 -14.07896 -13.83571 -13.47497 -13.15723 -13.06381 -12.93913 -12.67633 -12.61628 -12.45986 -12.32993 -11.98400 -11.86090 -11.65193 -11.52526 -11.49894 -11.33311 -11.08344 -10.63897 -10.07531 -9.93137 -9.77178 -8.28796 -6.42306 -0.14335 0.43830 1.02112 1.39279 1.40676 1.49999 1.55734 1.75852 1.91426 2.38749 2.89083 3.05690 3.10648 3.28798 3.53942 3.70506 3.91156 4.00646 4.01843 4.09608 4.14703 4.20875 4.23831 4.26349 4.45263 4.50821 4.54613 4.58146 4.63586 4.68407 4.78520 4.95521 5.00902 5.08231 5.14216 5.24513 5.38480 5.44204 5.45055 5.51866 5.53566 5.72384 5.98081 6.04144 6.28104 6.65021 6.72581 6.92867 7.27771 8.84017 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.002112 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.820753 B =13253.327314 C =13987.826784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.028 3.972 10 C 0.090 3.910 11 O -0.366 6.366 12 C 0.468 3.532 13 O -0.529 6.529 14 C -0.090 4.090 15 H 0.145 0.855 16 C -0.111 4.111 17 C 0.087 3.913 18 N -0.611 5.611 19 C 0.566 3.434 20 O -0.586 6.586 21 C -0.154 4.154 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.092 4.092 25 C -0.133 4.133 26 C -0.084 4.084 27 C 0.119 3.881 28 H 0.268 0.732 29 H 0.007 0.993 30 H 0.003 0.997 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 -32.708 -0.267 32.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.587 4.587 8 H 0.085 0.915 9 C -0.009 4.009 10 C 0.017 3.983 11 O -0.282 6.282 12 C 0.311 3.689 13 O -0.419 6.419 14 C -0.109 4.109 15 H 0.162 0.838 16 C -0.148 4.148 17 C -0.033 4.033 18 N -0.344 5.344 19 C 0.358 3.642 20 O -0.467 6.467 21 C -0.157 4.157 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.110 4.110 25 C -0.151 4.151 26 C -0.103 4.103 27 C -0.004 4.004 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.022 0.978 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.197 0.803 38 H 0.180 0.820 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.134 0.866 42 H 0.083 0.917 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.289 -32.257 0.138 32.425 hybrid contribution -0.135 1.630 0.347 1.672 sum 3.154 -30.627 0.485 30.793 Atomic orbital electron populations 1.70112 1.07881 1.28218 1.50468 1.26004 0.95858 1.03560 0.94118 0.85250 0.78945 0.77970 0.77976 1.18435 1.19992 1.20224 1.21410 0.93756 0.91168 1.52331 0.91503 1.19000 0.94429 0.90853 0.96605 1.23175 0.94943 0.78944 1.01189 1.86537 1.42810 1.16005 1.82834 1.23805 0.86272 0.87174 0.71639 1.90624 1.16469 1.88359 1.46413 1.22276 0.99903 0.87912 1.00835 0.83773 1.22805 0.96574 0.90644 1.04793 1.22991 0.88228 0.96510 0.95619 1.48337 1.30656 1.06665 1.48752 1.18582 0.79122 0.88196 0.78263 1.90774 1.42092 1.71424 1.42407 1.19783 0.99885 0.90571 1.05438 1.22988 0.98323 0.96066 0.96412 1.21622 0.99533 0.93576 0.99685 1.21859 0.92932 1.01861 0.94345 1.21421 1.00474 0.92871 1.00336 1.21356 0.96897 0.95349 0.96673 1.21960 1.01376 0.81412 0.95641 0.92361 0.97474 0.97845 0.92173 0.91693 0.85734 0.89593 0.86647 0.87333 0.80271 0.82036 0.82653 0.83544 0.86606 0.91714 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.98 43.94 29.54 68.60 2.03 45.97 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -31.30 9.11 25.60 0.23 -31.07 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.03 1.54 5.35 29.85 0.16 1.70 16 10 C 0.09 4.04 5.40 71.98 0.39 4.43 16 11 O -0.37 -14.37 10.22 -51.37 -0.53 -14.90 16 12 C 0.47 14.87 7.27 71.24 0.52 15.39 16 13 O -0.53 -18.81 15.46 21.98 0.34 -18.47 16 14 C -0.09 -1.90 3.54 -10.14 -0.04 -1.94 16 15 H 0.14 2.48 8.14 -2.39 -0.02 2.47 16 16 C -0.11 -1.50 6.08 31.78 0.19 -1.31 16 17 C 0.09 0.94 4.87 86.73 0.42 1.37 16 18 N -0.61 -12.86 3.33 -826.30 -2.75 -15.61 16 19 C 0.57 14.82 7.81 86.79 0.68 15.49 16 20 O -0.59 -20.89 16.67 -3.87 -0.06 -20.95 16 21 C -0.15 -3.02 5.87 -20.08 -0.12 -3.14 16 22 C -0.12 -1.39 8.60 22.53 0.19 -1.20 16 23 C -0.13 -0.98 10.03 22.23 0.22 -0.76 16 24 C -0.09 -0.77 10.04 22.33 0.22 -0.55 16 25 C -0.13 -1.66 10.03 22.23 0.22 -1.44 16 26 C -0.08 -1.60 9.59 22.53 0.22 -1.39 16 27 C 0.12 2.97 6.35 86.86 0.55 3.52 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 32 H 0.06 2.81 8.13 -2.39 -0.02 2.79 16 33 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.42 7.39 -2.39 -0.02 1.40 16 35 H 0.12 0.64 6.67 -2.39 -0.02 0.63 16 36 H 0.11 0.75 6.80 -2.39 -0.02 0.73 16 37 H 0.18 1.14 2.77 -7.19 -0.02 1.12 16 38 H 0.16 0.21 8.06 -2.91 -0.02 0.18 16 39 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 40 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.12 2.54 7.67 -2.91 -0.02 2.52 16 42 H 0.06 1.76 8.03 -2.39 -0.02 1.75 16 43 H 0.08 2.25 8.09 -2.39 -0.02 2.23 16 Total: -1.00 -78.77 361.72 4.86 -73.91 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.01 Total: 6.27 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 4.53 Total: -0.24 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -2.46 Total: -71.59 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.25 Total: -54.32 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -78.77 4.86 -73.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859941005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.976 kcal (2) G-P(sol) polarization free energy of solvation -78.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds