Wall clock time and date at job start Tue Mar 31 2020 10:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48494 * 109.47510 * 240.00368 * 3 2 1 5 5 H 1.48504 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46726 * 120.00321 * 3 2 1 7 7 C 1.37881 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99662 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47047 * 180.02562 * 9 7 2 11 11 O 1.45194 * 109.47002 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99951 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99918 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00117 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.88124 * 297.56403 * 14 12 11 16 16 C 1.55153 * 111.00558 * 173.64619 * 14 12 11 17 17 C 1.54330 * 102.94309 * 206.42026 * 16 14 12 18 18 N 1.47176 * 107.29131 * 22.28346 * 17 16 14 19 19 C 1.34780 * 125.73602 * 181.02932 * 18 17 16 20 20 O 1.21548 * 120.00024 * 174.18276 * 19 18 17 21 21 C 1.47849 * 119.99923 * 354.18334 * 19 18 17 22 22 C 1.39573 * 120.14430 * 186.93965 * 21 19 18 23 23 C 1.37961 * 119.85106 * 179.78795 * 22 21 19 24 24 C 1.38355 * 120.14413 * 0.48882 * 23 22 21 25 25 C 1.38366 * 120.29499 * 359.74415 * 24 23 22 26 26 C 1.37953 * 120.14321 * 0.02562 * 25 24 23 27 27 C 1.47426 * 108.61712 * 0.90941 * 18 17 16 28 28 H 0.97004 * 119.99513 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46943 * 60.00555 * 9 7 2 30 30 H 1.08998 * 109.46909 * 300.00561 * 9 7 2 31 31 H 1.08994 * 109.47207 * 59.99686 * 10 9 7 32 32 H 1.09003 * 109.46744 * 300.00296 * 10 9 7 33 33 H 1.09003 * 110.72110 * 324.78399 * 16 14 12 34 34 H 1.09000 * 110.72158 * 88.05513 * 16 14 12 35 35 H 1.09007 * 109.87934 * 141.60812 * 17 16 14 36 36 H 1.08997 * 109.88058 * 262.77056 * 17 16 14 37 37 H 1.07994 * 120.07171 * 359.97438 * 22 21 19 38 38 H 1.07990 * 119.92901 * 180.22856 * 23 22 21 39 39 H 1.08002 * 119.85608 * 179.71551 * 24 23 22 40 40 H 1.08003 * 119.93021 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.07452 * 179.97438 * 26 25 24 42 42 H 1.09001 * 110.36598 * 217.11003 * 27 18 17 43 43 H 1.09009 * 110.36636 * 94.90247 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 8 1.5191 -4.9195 -0.0011 12 6 2.2501 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0003 14 6 1.5659 -7.3880 -0.0019 15 1 0.9687 -7.5205 0.9003 16 6 2.5962 -8.5371 -0.1614 17 6 1.7620 -9.6618 -0.8101 18 7 0.6072 -9.0273 -1.4658 19 6 -0.3730 -9.6715 -2.1298 20 8 -1.3351 -9.0539 -2.5424 21 6 -0.2778 -11.1294 -2.3564 22 6 -1.2139 -11.7756 -3.1653 23 6 -1.1168 -13.1355 -3.3761 24 6 -0.1004 -13.8603 -2.7796 25 6 0.8280 -13.2266 -1.9727 26 6 0.7451 -11.8665 -1.7575 27 6 0.6994 -7.5686 -1.2731 28 1 -0.4849 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6246 -2.5570 0.8896 31 1 2.8718 -3.6044 0.8894 32 1 2.8718 -3.6044 -0.8905 33 1 3.4124 -8.2349 -0.8176 34 1 2.9773 -8.8510 0.8104 35 1 2.3632 -10.1893 -1.5506 36 1 1.4189 -10.3576 -0.0444 37 1 -2.0105 -11.2118 -3.6275 38 1 -1.8382 -13.6362 -4.0047 39 1 -0.0315 -14.9255 -2.9441 40 1 1.6192 -13.7981 -1.5103 41 1 1.4700 -11.3731 -1.1271 42 1 -0.2923 -7.1428 -1.1199 43 1 1.1832 -7.1023 -2.1314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859941006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:08 Heat of formation + Delta-G solvation = -77.493719 kcal Electronic energy + Delta-G solvation = -25268.908005 eV Core-core repulsion = 21472.794811 eV Total energy + Delta-G solvation = -3796.113194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04456 -40.07901 -38.69299 -37.55564 -36.14569 -33.38857 -32.89075 -31.36731 -31.18760 -30.41270 -29.42539 -25.76241 -25.04683 -23.56129 -22.88042 -22.33794 -20.97536 -20.25794 -20.11874 -17.80366 -17.76120 -16.82637 -16.78047 -16.18189 -16.00784 -15.87439 -15.34943 -14.93296 -14.73502 -14.51502 -14.36838 -13.96187 -13.93096 -13.39831 -13.22677 -12.99262 -12.82283 -12.62664 -12.41564 -12.28475 -11.78014 -11.60903 -11.27113 -11.24191 -11.06885 -11.00226 -10.76603 -10.71781 -10.36659 -10.13828 -9.69451 -9.64581 -9.40170 -9.38235 -9.32835 -8.98336 -8.45061 -6.10933 -4.15814 0.48978 0.96446 2.31084 2.54858 2.58315 3.08233 3.29478 3.33816 3.36971 3.50183 3.90517 4.10444 4.29088 4.38111 4.50617 4.54378 4.59654 4.66959 4.84657 4.86976 4.96959 5.00234 5.08943 5.24692 5.25396 5.37810 5.48425 5.53100 5.57307 5.66341 5.74031 5.85799 5.93354 6.02089 6.03449 6.04488 6.04765 6.48131 6.59857 6.89765 7.12916 7.53395 7.60518 7.84218 7.84997 8.09463 8.22490 8.89451 9.48596 11.00394 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029801 B = 0.002134 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.343962 B =13118.068166 C =13891.401600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.352 6.352 12 C 0.468 3.532 13 O -0.512 6.512 14 C -0.099 4.099 15 H 0.123 0.877 16 C -0.118 4.118 17 C 0.089 3.911 18 N -0.615 5.615 19 C 0.574 3.426 20 O -0.529 6.529 21 C -0.130 4.130 22 C -0.060 4.060 23 C -0.130 4.130 24 C -0.097 4.097 25 C -0.130 4.130 26 C -0.124 4.124 27 C 0.120 3.880 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.160 0.840 42 H 0.099 0.901 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -29.857 -2.682 30.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.268 6.268 12 C 0.310 3.690 13 O -0.401 6.401 14 C -0.119 4.119 15 H 0.141 0.859 16 C -0.156 4.156 17 C -0.033 4.033 18 N -0.349 5.349 19 C 0.364 3.636 20 O -0.406 6.406 21 C -0.133 4.133 22 C -0.079 4.079 23 C -0.148 4.148 24 C -0.115 4.115 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.002 4.002 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.177 0.823 42 H 0.118 0.882 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.451 -29.351 -2.957 29.535 hybrid contribution 0.601 0.929 0.053 1.107 sum 2.052 -28.422 -2.903 28.644 Atomic orbital electron populations 1.69967 1.06081 1.27136 1.49519 1.24990 0.94931 0.99399 0.94848 0.86524 0.79474 0.82478 0.78761 1.20063 1.21109 1.20083 1.20929 0.93113 0.90109 1.52495 0.92313 1.19175 0.94179 0.88967 0.98968 1.23692 0.96415 0.78639 1.01006 1.86545 1.42345 1.15801 1.82125 1.22933 0.86313 0.86849 0.72931 1.90643 1.15560 1.88183 1.45719 1.22180 0.98135 0.90180 1.01423 0.85901 1.22719 0.97373 0.92466 1.03059 1.22672 0.87409 0.96299 0.96899 1.48322 1.24212 1.07846 1.54526 1.17996 0.81214 0.86820 0.77580 1.90816 1.30851 1.68240 1.50710 1.19865 0.98506 0.92693 1.02219 1.21323 0.97076 0.94444 0.95065 1.21174 0.99041 0.93872 1.00665 1.21427 0.94236 1.00156 0.95718 1.21184 0.99625 0.94551 0.99389 1.22766 0.97831 0.94905 0.98691 1.22125 1.01739 0.80435 0.95947 0.92615 0.95268 0.95318 0.92197 0.92212 0.88654 0.88660 0.89689 0.89775 0.84626 0.85301 0.85667 0.85396 0.82278 0.88229 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.81 9.11 -34.43 -0.31 -15.12 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.07 1.63 5.40 37.16 0.20 1.83 16 11 O -0.35 -6.76 10.21 -39.26 -0.40 -7.16 16 12 C 0.47 7.49 7.26 36.01 0.26 7.75 16 13 O -0.51 -9.26 15.54 -18.76 -0.29 -9.55 16 14 C -0.10 -1.11 3.54 -89.63 -0.32 -1.43 16 15 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.12 -0.98 6.03 -24.90 -0.15 -1.13 16 17 C 0.09 0.63 4.87 -2.98 -0.01 0.61 16 18 N -0.61 -6.62 3.33 -175.17 -0.58 -7.20 16 19 C 0.57 7.26 7.81 -12.33 -0.10 7.17 16 20 O -0.53 -8.69 16.60 5.32 0.09 -8.60 16 21 C -0.13 -1.31 5.87 -104.97 -0.62 -1.92 16 22 C -0.06 -0.57 9.59 -39.19 -0.38 -0.94 16 23 C -0.13 -0.91 10.03 -39.64 -0.40 -1.31 16 24 C -0.10 -0.59 10.04 -39.49 -0.40 -0.98 16 25 C -0.13 -0.79 10.03 -39.64 -0.40 -1.18 16 26 C -0.12 -0.91 8.62 -39.18 -0.34 -1.25 16 27 C 0.12 1.45 6.38 -2.53 -0.02 1.43 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 32 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 33 H 0.09 0.89 7.50 -51.93 -0.39 0.50 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.47 6.75 -51.92 -0.35 0.12 16 36 H 0.08 0.42 6.75 -51.93 -0.35 0.07 16 37 H 0.14 1.32 7.67 -52.49 -0.40 0.91 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 41 H 0.16 0.85 2.75 -57.26 -0.16 0.69 16 42 H 0.10 1.33 7.98 -51.93 -0.41 0.91 16 43 H 0.08 1.01 8.03 -51.92 -0.42 0.59 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -34.28 361.73 -9.06 -43.34 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.83 Total: -2.62 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.21 Total: -4.38 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.15 Total: -32.87 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.60 Total: -25.32 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.28 -9.06 -43.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859941006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.153 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds