Wall clock time and date at job start Tue Mar 31 2020 10:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48494 * 109.47510 * 240.00368 * 3 2 1 5 5 H 1.48504 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46726 * 120.00321 * 3 2 1 7 7 C 1.37881 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99662 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47047 * 180.02562 * 9 7 2 11 11 O 1.45194 * 109.47002 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99951 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99918 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00117 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.88124 * 297.56403 * 14 12 11 16 16 C 1.55153 * 111.00558 * 173.64619 * 14 12 11 17 17 C 1.54330 * 102.94309 * 206.42026 * 16 14 12 18 18 N 1.47176 * 107.29131 * 22.28346 * 17 16 14 19 19 C 1.34780 * 125.73602 * 181.02932 * 18 17 16 20 20 O 1.21548 * 120.00024 * 174.18276 * 19 18 17 21 21 C 1.47849 * 119.99923 * 354.18334 * 19 18 17 22 22 C 1.39573 * 120.14430 * 186.93965 * 21 19 18 23 23 C 1.37961 * 119.85106 * 179.78795 * 22 21 19 24 24 C 1.38355 * 120.14413 * 0.48882 * 23 22 21 25 25 C 1.38366 * 120.29499 * 359.74415 * 24 23 22 26 26 C 1.37953 * 120.14321 * 0.02562 * 25 24 23 27 27 C 1.47426 * 108.61712 * 0.90941 * 18 17 16 28 28 H 0.97004 * 119.99513 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46943 * 60.00555 * 9 7 2 30 30 H 1.08998 * 109.46909 * 300.00561 * 9 7 2 31 31 H 1.08994 * 109.47207 * 59.99686 * 10 9 7 32 32 H 1.09003 * 109.46744 * 300.00296 * 10 9 7 33 33 H 1.09003 * 110.72110 * 324.78399 * 16 14 12 34 34 H 1.09000 * 110.72158 * 88.05513 * 16 14 12 35 35 H 1.09007 * 109.87934 * 141.60812 * 17 16 14 36 36 H 1.08997 * 109.88058 * 262.77056 * 17 16 14 37 37 H 1.07994 * 120.07171 * 359.97438 * 22 21 19 38 38 H 1.07990 * 119.92901 * 180.22856 * 23 22 21 39 39 H 1.08002 * 119.85608 * 179.71551 * 24 23 22 40 40 H 1.08003 * 119.93021 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.07452 * 179.97438 * 26 25 24 42 42 H 1.09001 * 110.36598 * 217.11003 * 27 18 17 43 43 H 1.09009 * 110.36636 * 94.90247 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 8 1.5191 -4.9195 -0.0011 12 6 2.2501 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0003 14 6 1.5659 -7.3880 -0.0019 15 1 0.9687 -7.5205 0.9003 16 6 2.5962 -8.5371 -0.1614 17 6 1.7620 -9.6618 -0.8101 18 7 0.6072 -9.0273 -1.4658 19 6 -0.3730 -9.6715 -2.1298 20 8 -1.3351 -9.0539 -2.5424 21 6 -0.2778 -11.1294 -2.3564 22 6 -1.2139 -11.7756 -3.1653 23 6 -1.1168 -13.1355 -3.3761 24 6 -0.1004 -13.8603 -2.7796 25 6 0.8280 -13.2266 -1.9727 26 6 0.7451 -11.8665 -1.7575 27 6 0.6994 -7.5686 -1.2731 28 1 -0.4849 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6246 -2.5570 0.8896 31 1 2.8718 -3.6044 0.8894 32 1 2.8718 -3.6044 -0.8905 33 1 3.4124 -8.2349 -0.8176 34 1 2.9773 -8.8510 0.8104 35 1 2.3632 -10.1893 -1.5506 36 1 1.4189 -10.3576 -0.0444 37 1 -2.0105 -11.2118 -3.6275 38 1 -1.8382 -13.6362 -4.0047 39 1 -0.0315 -14.9255 -2.9441 40 1 1.6192 -13.7981 -1.5103 41 1 1.4700 -11.3731 -1.1271 42 1 -0.2923 -7.1428 -1.1199 43 1 1.1832 -7.1023 -2.1314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859941006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:07 Heat of formation + Delta-G solvation = -97.733438 kcal Electronic energy + Delta-G solvation = -25269.785666 eV Core-core repulsion = 21472.794811 eV Total energy + Delta-G solvation = -3796.990855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02357 -41.25918 -39.40715 -38.57746 -37.61840 -35.46965 -33.78344 -32.36003 -31.93578 -31.83876 -30.31152 -27.29628 -26.31993 -24.56494 -23.55891 -23.18770 -22.74118 -21.35683 -20.99921 -19.13261 -18.55870 -18.36757 -17.81901 -17.52210 -17.35725 -16.83084 -16.61902 -16.30023 -15.78782 -15.46092 -15.12494 -14.95804 -14.60390 -14.52449 -14.41185 -14.28515 -14.03290 -13.84812 -13.47507 -13.14594 -13.07609 -12.94549 -12.68183 -12.58806 -12.46027 -12.32570 -11.99644 -11.86365 -11.65015 -11.53820 -11.49263 -11.34882 -11.07778 -10.62442 -10.07013 -9.93193 -9.76949 -8.28170 -6.41985 -0.14456 0.43740 1.03230 1.39324 1.43794 1.49956 1.54743 1.74537 1.91615 2.39062 2.89312 3.06073 3.08870 3.29636 3.54317 3.71038 3.91338 4.00677 4.02151 4.06974 4.15809 4.20978 4.23969 4.26886 4.46086 4.50871 4.54672 4.59764 4.64321 4.68623 4.79080 4.95458 5.01024 5.08457 5.13423 5.24475 5.38443 5.44269 5.44973 5.51798 5.53388 5.72366 5.98003 6.04257 6.28527 6.65061 6.72477 6.93372 7.27949 8.84174 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029801 B = 0.002134 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.343962 B =13118.068166 C =13891.401600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.029 3.971 10 C 0.091 3.909 11 O -0.366 6.366 12 C 0.468 3.532 13 O -0.529 6.529 14 C -0.089 4.089 15 H 0.146 0.854 16 C -0.109 4.109 17 C 0.087 3.913 18 N -0.612 5.612 19 C 0.566 3.434 20 O -0.585 6.585 21 C -0.154 4.154 22 C -0.084 4.084 23 C -0.133 4.133 24 C -0.092 4.092 25 C -0.127 4.127 26 C -0.121 4.121 27 C 0.118 3.882 28 H 0.268 0.732 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.181 0.819 42 H 0.078 0.922 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -32.562 -1.759 32.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.085 0.915 9 C -0.008 4.008 10 C 0.018 3.982 11 O -0.282 6.282 12 C 0.311 3.689 13 O -0.419 6.419 14 C -0.109 4.109 15 H 0.163 0.837 16 C -0.147 4.147 17 C -0.034 4.034 18 N -0.345 5.345 19 C 0.359 3.641 20 O -0.467 6.467 21 C -0.157 4.157 22 C -0.103 4.103 23 C -0.151 4.151 24 C -0.110 4.110 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.005 4.005 28 H 0.076 0.924 29 H 0.021 0.979 30 H 0.024 0.976 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.180 0.820 41 H 0.198 0.802 42 H 0.096 0.904 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.942 -32.098 -2.018 32.402 hybrid contribution -0.171 1.636 -0.256 1.665 sum 3.770 -30.462 -2.274 30.778 Atomic orbital electron populations 1.70102 1.07899 1.28345 1.50312 1.26011 0.95855 1.03570 0.94091 0.85354 0.78152 0.77298 0.79374 1.19036 1.20600 1.18854 1.21355 0.93757 0.91163 1.52570 0.91463 1.18989 0.94423 0.90868 0.96558 1.23171 0.94931 0.78943 1.01196 1.86540 1.42825 1.16015 1.82837 1.23815 0.86274 0.87154 0.71638 1.90629 1.16420 1.88365 1.46445 1.22281 0.98973 0.88041 1.01599 0.83681 1.22792 0.96223 0.91094 1.04569 1.23017 0.86109 0.96204 0.98028 1.48367 1.24861 1.07184 1.54072 1.18573 0.80671 0.88029 0.76874 1.90773 1.33167 1.69582 1.53156 1.19792 1.00514 0.91102 1.04310 1.21358 0.97173 0.95717 0.96062 1.21419 0.99980 0.92813 1.00908 1.21861 0.93124 1.01629 0.94391 1.21624 1.00089 0.94063 0.98655 1.22996 0.97012 0.95559 0.98218 1.21973 1.00685 0.81748 0.96143 0.92361 0.97881 0.97554 0.91707 0.92126 0.89670 0.85716 0.87382 0.86550 0.86630 0.83555 0.82647 0.82016 0.80212 0.90376 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.03 1.57 5.35 29.85 0.16 1.73 16 10 C 0.09 4.04 5.40 71.98 0.39 4.43 16 11 O -0.37 -14.42 10.21 -51.41 -0.52 -14.94 16 12 C 0.47 14.86 7.26 71.24 0.52 15.38 16 13 O -0.53 -18.74 15.54 21.94 0.34 -18.40 16 14 C -0.09 -1.90 3.54 -10.15 -0.04 -1.94 16 15 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 16 C -0.11 -1.48 6.03 31.78 0.19 -1.28 16 17 C 0.09 0.94 4.87 86.70 0.42 1.36 16 18 N -0.61 -12.93 3.33 -826.40 -2.75 -15.68 16 19 C 0.57 14.91 7.81 86.79 0.68 15.58 16 20 O -0.59 -20.98 16.60 -3.87 -0.06 -21.05 16 21 C -0.15 -3.05 5.87 -20.09 -0.12 -3.17 16 22 C -0.08 -1.63 9.59 22.53 0.22 -1.41 16 23 C -0.13 -1.69 10.03 22.23 0.22 -1.46 16 24 C -0.09 -0.79 10.04 22.33 0.22 -0.56 16 25 C -0.13 -1.00 10.03 22.23 0.22 -0.78 16 26 C -0.12 -1.40 8.62 22.53 0.19 -1.21 16 27 C 0.12 2.95 6.38 86.85 0.55 3.50 16 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 2.81 8.13 -2.39 -0.02 2.79 16 32 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 33 H 0.08 1.39 7.50 -2.39 -0.02 1.37 16 34 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 0.77 6.75 -2.38 -0.02 0.75 16 36 H 0.12 0.61 6.75 -2.39 -0.02 0.59 16 37 H 0.12 2.57 7.67 -2.91 -0.02 2.55 16 38 H 0.15 1.21 8.06 -2.92 -0.02 1.19 16 39 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.16 0.22 8.06 -2.91 -0.02 0.19 16 41 H 0.18 1.13 2.75 -7.39 -0.02 1.11 16 42 H 0.08 2.27 7.98 -2.39 -0.02 2.25 16 43 H 0.07 1.79 8.03 -2.38 -0.02 1.78 16 Total: -1.00 -78.88 361.73 4.85 -74.03 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.01 Total: 6.58 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 4.53 Total: -0.34 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -2.47 Total: -71.82 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.25 Total: -54.39 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -78.88 4.85 -74.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859941006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.707 kcal (2) G-P(sol) polarization free energy of solvation -78.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds