Wall clock time and date at job start Tue Mar 31 2020 11:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00120 * 2 1 4 4 H 1.48501 * 109.47246 * 270.00274 * 3 2 1 5 5 H 1.48499 * 109.46915 * 30.00279 * 3 2 1 6 6 H 1.48501 * 109.47066 * 150.00543 * 3 2 1 7 7 C 1.38704 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00438 * 359.97438 * 7 2 1 9 9 O 1.34815 * 119.99765 * 180.02562 * 7 2 1 10 10 C 1.35515 * 116.99988 * 185.05056 * 9 7 2 11 11 C 1.38833 * 120.16492 * 354.39362 * 10 9 7 12 12 C 1.38013 * 120.07729 * 179.97438 * 11 10 9 13 13 C 1.38577 * 120.40209 * 359.97438 * 12 11 10 14 14 C 1.37827 * 120.32173 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91985 * 359.97435 * 14 13 12 16 16 C 1.47530 * 120.19721 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00229 * 180.02562 * 16 15 14 18 18 N 1.34775 * 120.00239 * 0.02562 * 16 15 14 19 19 C 1.46500 * 120.00385 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47181 * 180.02562 * 19 18 16 21 21 O 1.20760 * 120.00234 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99870 * 180.02562 * 20 19 18 23 23 C 1.54275 * 110.03093 * 272.90714 * 22 20 19 24 24 C 1.54964 * 104.15833 * 217.13588 * 23 22 20 25 25 C 1.54899 * 102.77751 * 37.88851 * 24 23 22 26 26 C 1.53879 * 110.03175 * 155.69188 * 22 20 19 27 27 H 0.96995 * 119.99875 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.95683 * 359.97438 * 11 10 9 29 29 H 1.08006 * 119.80230 * 180.27524 * 12 11 10 30 30 H 1.08001 * 119.83901 * 180.02562 * 13 12 11 31 31 H 1.08006 * 120.04191 * 180.02562 * 14 13 12 32 32 H 0.97008 * 119.99718 * 0.02562 * 18 16 15 33 33 H 1.09001 * 109.47002 * 299.99912 * 19 18 16 34 34 H 1.08996 * 109.47024 * 60.00002 * 19 18 16 35 35 H 1.08997 * 110.01512 * 34.29674 * 22 20 19 36 36 H 1.08997 * 110.48712 * 335.78310 * 23 22 20 37 37 H 1.08997 * 110.48668 * 98.42941 * 23 22 20 38 38 H 1.08999 * 110.72353 * 279.57711 * 24 23 22 39 39 H 1.08997 * 110.92099 * 156.29444 * 24 23 22 40 40 H 1.09000 * 110.48221 * 203.40223 * 25 24 23 41 41 H 1.09002 * 110.59521 * 80.81405 * 25 24 23 42 42 H 1.08997 * 110.02580 * 238.56506 * 26 22 20 43 43 H 1.08998 * 110.03035 * 359.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0086 -1.2013 -0.0005 8 1 1.4687 -2.1365 -0.0005 9 8 3.3568 -1.2013 0.0000 10 6 3.9720 -2.4040 -0.1069 11 6 3.2243 -3.5737 -0.0936 12 6 3.8527 -4.7976 -0.2031 13 6 5.2311 -4.8696 -0.3274 14 6 5.9894 -3.7188 -0.3424 15 6 5.3674 -2.4731 -0.2325 16 6 6.1732 -1.2374 -0.2485 17 8 5.6280 -0.1548 -0.1521 18 7 7.5135 -1.3084 -0.3700 19 6 8.3138 -0.0813 -0.3853 20 6 9.7717 -0.4341 -0.5304 21 8 10.1077 -1.5911 -0.6121 22 6 10.8104 0.6570 -0.5724 23 6 10.9943 1.1560 -2.0206 24 6 12.5136 1.4390 -2.1339 25 6 13.1392 0.2865 -1.3095 26 6 12.1736 0.1046 -0.1202 27 1 -0.4850 0.8400 0.0004 28 1 2.1496 -3.5258 0.0025 29 1 3.2663 -5.7045 -0.1968 30 1 5.7133 -5.8321 -0.4129 31 1 7.0633 -3.7801 -0.4399 32 1 7.9485 -2.1720 -0.4472 33 1 8.0060 0.5427 -1.2244 34 1 8.1623 0.4629 0.5469 35 1 10.5098 1.4831 0.0719 36 1 10.6960 0.3847 -2.7307 37 1 10.4221 2.0691 -2.1850 38 1 12.7597 2.4058 -1.6948 39 1 12.8416 1.3932 -3.1724 40 1 14.1317 0.5656 -0.9558 41 1 13.1894 -0.6263 -1.9031 42 1 12.5350 0.6635 0.7430 43 1 12.0837 -0.9524 0.1300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863060955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:41 Heat of formation + Delta-G solvation = -80.914355 kcal Electronic energy + Delta-G solvation = -25897.596983 eV Core-core repulsion = 22101.335459 eV Total energy + Delta-G solvation = -3796.261524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56652 -39.65607 -38.22530 -37.32036 -36.52335 -34.12495 -32.45799 -31.11066 -30.15526 -29.19883 -29.08196 -27.38443 -25.27289 -23.29973 -21.96036 -21.19588 -21.02893 -20.20114 -19.30639 -18.12208 -17.90283 -16.82636 -16.35559 -16.14835 -15.72454 -15.43237 -14.93109 -14.63443 -14.41032 -14.18408 -14.05402 -13.79018 -13.71742 -13.58359 -13.47235 -12.69479 -12.42898 -12.35849 -12.27853 -12.17139 -11.65904 -11.48259 -11.46492 -11.39701 -11.27431 -11.12532 -10.87971 -10.83187 -10.72865 -10.06647 -9.87735 -9.64373 -9.11625 -8.90282 -8.86512 -8.38348 -7.48269 -6.47738 -4.12763 1.56536 1.61800 2.19509 3.23412 3.30511 3.36422 3.53147 3.64599 3.81451 4.12506 4.20784 4.34333 4.51066 4.53062 4.73446 4.96115 5.01380 5.05689 5.08280 5.14154 5.19944 5.25802 5.29249 5.36173 5.41061 5.47350 5.48628 5.55541 5.66658 5.73174 5.76428 5.90716 5.94794 5.96569 6.04394 6.38115 6.54173 6.63717 6.83608 7.00826 7.14952 7.16994 7.48153 7.67001 7.89478 7.94524 8.79322 8.87993 9.50904 10.57478 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003354 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.015905 B = 8346.748150 C =10027.435043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.396 4.396 8 H 0.108 0.892 9 O -0.166 6.166 10 C 0.202 3.798 11 C -0.227 4.227 12 C -0.050 4.050 13 C -0.220 4.220 14 C -0.039 4.039 15 C -0.227 4.227 16 C 0.563 3.437 17 O -0.519 6.519 18 N -0.738 5.738 19 C 0.072 3.928 20 C 0.360 3.640 21 O -0.447 6.447 22 C -0.140 4.140 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.120 4.120 27 H 0.282 0.718 28 H 0.139 0.861 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.403 0.597 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.751 -0.256 -2.111 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.471 4.471 8 H 0.126 0.874 9 O -0.066 6.066 10 C 0.145 3.855 11 C -0.246 4.246 12 C -0.068 4.068 13 C -0.239 4.239 14 C -0.058 4.058 15 C -0.232 4.232 16 C 0.354 3.646 17 O -0.395 6.395 18 N -0.396 5.396 19 C -0.052 4.052 20 C 0.235 3.765 21 O -0.320 6.320 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.157 4.157 27 H 0.092 0.908 28 H 0.156 0.844 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.241 0.759 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.372 0.323 -2.045 22.467 hybrid contribution 0.192 0.236 -0.025 0.305 sum 22.563 0.559 -2.070 22.665 Atomic orbital electron populations 1.69638 1.05814 1.28945 1.46160 1.24501 0.94971 0.99309 0.94648 0.86189 0.81267 0.80421 0.79557 1.19948 1.21252 1.16139 1.20933 0.77117 0.96780 1.52316 0.87434 1.83772 1.22090 1.24949 1.75788 1.19006 0.90212 0.85844 0.90486 1.21282 1.01370 0.91627 1.10345 1.20977 0.94363 0.96792 0.94693 1.20555 0.94003 0.97365 1.12014 1.20814 0.98279 0.91293 0.95424 1.18785 0.91119 0.92699 1.20599 1.18200 0.80774 0.89552 0.76101 1.90854 1.70984 1.29301 1.48327 1.45715 1.06803 1.08864 1.78194 1.21587 0.89022 0.89840 1.04795 1.24787 0.91563 0.90151 0.70041 1.90356 1.83408 1.22482 1.35753 1.22334 0.95597 0.98286 0.99775 1.22318 0.97412 1.01455 0.93674 1.22519 0.94383 0.98786 1.00396 1.22355 0.98401 0.98762 0.96625 1.22169 0.92658 1.02491 0.98390 0.90829 0.84367 0.86772 0.86929 0.86717 0.75929 0.88127 0.88115 0.87923 0.91115 0.90329 0.91133 0.91206 0.91512 0.91417 0.91245 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.25 13.96 55.48 0.77 -24.48 16 2 C 0.07 2.04 5.49 -17.51 -0.10 1.95 16 3 Si 0.90 23.01 28.62 -169.99 -4.86 18.15 16 4 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.24 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.40 -11.34 9.95 30.90 0.31 -11.03 16 8 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 9 O -0.17 -4.56 6.67 -21.04 -0.14 -4.70 16 10 C 0.20 4.82 6.66 -38.60 -0.26 4.56 16 11 C -0.23 -4.83 9.16 -39.44 -0.36 -5.20 16 12 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 13 C -0.22 -3.54 10.03 -39.61 -0.40 -3.94 16 14 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 15 C -0.23 -4.72 5.89 -104.81 -0.62 -5.33 16 16 C 0.56 11.53 7.76 -12.47 -0.10 11.43 16 17 O -0.52 -12.68 15.17 -16.57 -0.25 -12.94 16 18 N -0.74 -11.51 5.48 -62.53 -0.34 -11.85 16 19 C 0.07 0.90 6.09 -5.19 -0.03 0.87 16 20 C 0.36 3.81 6.22 -29.03 -0.18 3.63 16 21 O -0.45 -5.77 14.85 6.00 0.09 -5.69 16 22 C -0.14 -1.10 3.23 -90.65 -0.29 -1.39 16 23 C -0.11 -0.79 6.36 -25.03 -0.16 -0.95 16 24 C -0.12 -0.76 6.91 -24.69 -0.17 -0.94 16 25 C -0.12 -0.84 6.83 -25.07 -0.17 -1.02 16 26 C -0.12 -0.92 6.33 -25.61 -0.16 -1.08 16 27 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.14 3.04 5.64 -52.48 -0.30 2.74 16 29 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.57 6.40 -52.48 -0.34 1.23 16 32 H 0.40 5.69 5.47 -40.82 -0.22 5.46 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.75 6.70 -51.93 -0.35 0.40 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -33.35 357.73 -8.48 -41.83 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.68 Total: 5.03 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -3.46 Total: -10.74 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.43 Total: -36.33 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.30 Total: -23.33 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.86 Total: 18.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.35 -8.48 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863060955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.080 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds