Wall clock time and date at job start Tue Mar 31 2020 11:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00120 * 2 1 4 4 H 1.48501 * 109.47246 * 270.00274 * 3 2 1 5 5 H 1.48499 * 109.46915 * 30.00279 * 3 2 1 6 6 H 1.48501 * 109.47066 * 150.00543 * 3 2 1 7 7 C 1.38704 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00438 * 359.97438 * 7 2 1 9 9 O 1.34815 * 119.99765 * 180.02562 * 7 2 1 10 10 C 1.35515 * 116.99988 * 185.05056 * 9 7 2 11 11 C 1.38833 * 120.16492 * 354.39362 * 10 9 7 12 12 C 1.38013 * 120.07729 * 179.97438 * 11 10 9 13 13 C 1.38577 * 120.40209 * 359.97438 * 12 11 10 14 14 C 1.37827 * 120.32173 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91985 * 359.97435 * 14 13 12 16 16 C 1.47530 * 120.19721 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00229 * 180.02562 * 16 15 14 18 18 N 1.34775 * 120.00239 * 0.02562 * 16 15 14 19 19 C 1.46500 * 120.00385 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47181 * 180.02562 * 19 18 16 21 21 O 1.20760 * 120.00234 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99870 * 180.02562 * 20 19 18 23 23 C 1.54275 * 110.03093 * 272.90714 * 22 20 19 24 24 C 1.54964 * 104.15833 * 217.13588 * 23 22 20 25 25 C 1.54899 * 102.77751 * 37.88851 * 24 23 22 26 26 C 1.53879 * 110.03175 * 155.69188 * 22 20 19 27 27 H 0.96995 * 119.99875 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.95683 * 359.97438 * 11 10 9 29 29 H 1.08006 * 119.80230 * 180.27524 * 12 11 10 30 30 H 1.08001 * 119.83901 * 180.02562 * 13 12 11 31 31 H 1.08006 * 120.04191 * 180.02562 * 14 13 12 32 32 H 0.97008 * 119.99718 * 0.02562 * 18 16 15 33 33 H 1.09001 * 109.47002 * 299.99912 * 19 18 16 34 34 H 1.08996 * 109.47024 * 60.00002 * 19 18 16 35 35 H 1.08997 * 110.01512 * 34.29674 * 22 20 19 36 36 H 1.08997 * 110.48712 * 335.78310 * 23 22 20 37 37 H 1.08997 * 110.48668 * 98.42941 * 23 22 20 38 38 H 1.08999 * 110.72353 * 279.57711 * 24 23 22 39 39 H 1.08997 * 110.92099 * 156.29444 * 24 23 22 40 40 H 1.09000 * 110.48221 * 203.40223 * 25 24 23 41 41 H 1.09002 * 110.59521 * 80.81405 * 25 24 23 42 42 H 1.08997 * 110.02580 * 238.56506 * 26 22 20 43 43 H 1.08998 * 110.03035 * 359.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0086 -1.2013 -0.0005 8 1 1.4687 -2.1365 -0.0005 9 8 3.3568 -1.2013 0.0000 10 6 3.9720 -2.4040 -0.1069 11 6 3.2243 -3.5737 -0.0936 12 6 3.8527 -4.7976 -0.2031 13 6 5.2311 -4.8696 -0.3274 14 6 5.9894 -3.7188 -0.3424 15 6 5.3674 -2.4731 -0.2325 16 6 6.1732 -1.2374 -0.2485 17 8 5.6280 -0.1548 -0.1521 18 7 7.5135 -1.3084 -0.3700 19 6 8.3138 -0.0813 -0.3853 20 6 9.7717 -0.4341 -0.5304 21 8 10.1077 -1.5911 -0.6121 22 6 10.8104 0.6570 -0.5724 23 6 10.9943 1.1560 -2.0206 24 6 12.5136 1.4390 -2.1339 25 6 13.1392 0.2865 -1.3095 26 6 12.1736 0.1046 -0.1202 27 1 -0.4850 0.8400 0.0004 28 1 2.1496 -3.5258 0.0025 29 1 3.2663 -5.7045 -0.1968 30 1 5.7133 -5.8321 -0.4129 31 1 7.0633 -3.7801 -0.4399 32 1 7.9485 -2.1720 -0.4472 33 1 8.0060 0.5427 -1.2244 34 1 8.1623 0.4629 0.5469 35 1 10.5098 1.4831 0.0719 36 1 10.6960 0.3847 -2.7307 37 1 10.4221 2.0691 -2.1850 38 1 12.7597 2.4058 -1.6948 39 1 12.8416 1.3932 -3.1724 40 1 14.1317 0.5656 -0.9558 41 1 13.1894 -0.6263 -1.9031 42 1 12.5350 0.6635 0.7430 43 1 12.0837 -0.9524 0.1300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863060955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:41 Heat of formation + Delta-G solvation = -101.398416 kcal Electronic energy + Delta-G solvation = -25898.485239 eV Core-core repulsion = 22101.335459 eV Total energy + Delta-G solvation = -3797.149780 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66357 -41.09251 -39.79643 -38.18905 -38.04260 -35.53119 -34.51710 -32.50089 -31.05917 -30.82388 -29.63309 -28.45509 -27.21850 -24.74007 -23.18021 -22.47789 -21.67562 -21.58685 -20.22380 -19.80419 -19.50128 -18.26977 -17.48427 -17.21589 -16.83120 -16.63089 -16.25536 -16.05093 -15.89171 -15.64665 -15.50769 -15.30770 -15.07332 -14.63823 -14.31877 -14.24203 -14.07577 -14.03160 -13.63432 -13.11852 -12.92943 -12.85007 -12.59313 -12.41551 -12.26160 -12.02535 -12.01137 -11.95665 -11.66275 -11.55696 -11.41683 -10.96799 -10.91510 -10.64612 -10.28730 -9.88625 -9.17847 -8.57452 -6.26963 0.00866 0.61775 0.75529 1.26495 1.31801 1.59428 1.95960 2.01212 2.30745 2.75121 2.84762 2.98831 3.14040 3.53991 3.64324 3.82907 3.94047 3.98731 4.22569 4.29127 4.30831 4.37627 4.46094 4.49449 4.51343 4.55608 4.58245 4.66300 4.78228 4.79383 4.96322 5.02743 5.06118 5.22076 5.22578 5.26474 5.29285 5.36919 5.45436 5.45874 5.58932 5.67317 5.82202 6.12681 6.29908 6.49167 6.78789 7.27319 7.56938 8.52874 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003354 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.015905 B = 8346.748150 C =10027.435043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.405 4.405 8 H 0.092 0.908 9 O -0.206 6.206 10 C 0.165 3.835 11 C -0.249 4.249 12 C -0.040 4.040 13 C -0.190 4.190 14 C -0.033 4.033 15 C -0.236 4.236 16 C 0.559 3.441 17 O -0.565 6.565 18 N -0.719 5.719 19 C 0.063 3.937 20 C 0.372 3.628 21 O -0.471 6.471 22 C -0.136 4.136 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.120 4.120 27 H 0.286 0.714 28 H 0.118 0.882 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.412 0.588 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.408 -1.619 -2.417 26.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.481 4.481 8 H 0.109 0.891 9 O -0.110 6.110 10 C 0.111 3.889 11 C -0.268 4.268 12 C -0.058 4.058 13 C -0.208 4.208 14 C -0.051 4.051 15 C -0.240 4.240 16 C 0.349 3.651 17 O -0.445 6.445 18 N -0.376 5.376 19 C -0.061 4.061 20 C 0.249 3.751 21 O -0.345 6.345 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.157 4.157 25 C -0.162 4.162 26 C -0.158 4.158 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.173 0.827 32 H 0.252 0.748 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.142 0.858 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.099 -1.091 -2.360 26.228 hybrid contribution -0.599 0.267 0.034 0.657 sum 25.500 -0.824 -2.325 25.619 Atomic orbital electron populations 1.69686 1.06530 1.29653 1.49249 1.25090 0.95670 1.01618 0.95195 0.85377 0.79137 0.78213 0.79128 1.20020 1.19041 1.18726 1.20906 0.78307 0.96360 1.52512 0.89106 1.83756 1.20857 1.26770 1.79653 1.19701 0.91839 0.85815 0.91516 1.21348 1.00692 0.92837 1.11961 1.21449 0.95652 0.96384 0.92295 1.21215 0.93209 0.99195 1.07205 1.21303 1.00409 0.89819 0.93613 1.19216 0.90180 0.94772 1.19840 1.18304 0.82161 0.88837 0.75796 1.90837 1.72209 1.30813 1.50636 1.45537 1.05398 1.10587 1.76092 1.21890 0.90037 0.88702 1.05491 1.24893 0.90859 0.90496 0.68871 1.90352 1.83468 1.23566 1.37133 1.22401 0.94628 0.97717 1.00831 1.22369 0.98469 1.01550 0.92680 1.22526 0.93365 0.99065 1.00753 1.22366 0.98945 0.98639 0.96266 1.22192 0.92740 1.01518 0.99344 0.90409 0.86401 0.82915 0.81772 0.82719 0.74834 0.87622 0.87475 0.85824 0.92348 0.89144 0.89858 0.90712 0.90277 0.92510 0.89767 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.59 13.96 21.62 0.30 -55.29 16 2 C 0.02 1.48 5.49 84.85 0.47 1.95 16 3 Si 0.96 50.07 28.62 68.60 1.96 52.03 16 4 H -0.27 -14.10 7.11 99.48 0.71 -13.40 16 5 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.26 -14.65 7.11 99.48 0.71 -13.94 16 7 C -0.40 -24.69 9.95 67.93 0.68 -24.01 16 8 H 0.09 5.61 5.44 -2.91 -0.02 5.59 16 9 O -0.21 -12.00 6.67 0.89 0.01 -11.99 16 10 C 0.16 8.06 6.66 22.91 0.15 8.21 16 11 C -0.25 -10.72 9.16 22.36 0.20 -10.52 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.02 16 13 C -0.19 -5.05 10.03 22.25 0.22 -4.83 16 14 C -0.03 -0.98 9.53 22.52 0.21 -0.76 16 15 C -0.24 -9.58 5.89 -19.99 -0.12 -9.70 16 16 C 0.56 22.77 7.76 86.69 0.67 23.44 16 17 O -0.57 -28.43 15.17 16.90 0.26 -28.18 16 18 N -0.72 -21.33 5.48 -470.02 -2.57 -23.90 16 19 C 0.06 1.48 6.09 85.63 0.52 2.00 16 20 C 0.37 7.18 6.22 29.10 0.18 7.36 16 21 O -0.47 -11.27 14.85 -1.45 -0.02 -11.29 16 22 C -0.14 -1.82 3.23 -10.81 -0.03 -1.85 16 23 C -0.11 -1.36 6.36 31.70 0.20 -1.16 16 24 C -0.12 -1.17 6.91 31.91 0.22 -0.95 16 25 C -0.12 -1.43 6.83 31.67 0.22 -1.21 16 26 C -0.12 -1.59 6.33 31.32 0.20 -1.39 16 27 H 0.29 16.03 8.31 -92.71 -0.77 15.26 16 28 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 29 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.16 3.37 6.40 -2.91 -0.02 3.35 16 32 H 0.41 10.50 5.47 -92.70 -0.51 10.00 16 33 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.85 7.85 -2.39 -0.02 0.83 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 1.05 6.70 -2.39 -0.02 1.04 16 Total: -1.00 -78.60 357.73 4.69 -73.91 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.54 Total: 19.13 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.22 Total: -14.43 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -2.27 Total: -79.19 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: 0.24 Total: -51.46 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.96 Total: 52.03 kcal Total: -78.60 4.69 -73.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863060955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.485 kcal (2) G-P(sol) polarization free energy of solvation -78.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds