Wall clock time and date at job start Tue Mar 31 2020 11:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34705 * 117.00131 * 2 1 4 4 O 1.21469 * 119.99811 * 359.97438 * 3 2 1 5 5 C 1.47737 * 120.00350 * 180.02562 * 3 2 1 6 6 C 1.39387 * 120.07657 * 353.48879 * 5 3 2 7 7 C 1.39287 * 119.70136 * 179.74696 * 6 5 3 8 8 C 1.47864 * 120.07226 * 180.23746 * 7 6 5 9 9 O 1.21554 * 119.99801 * 5.54690 * 8 7 6 10 10 N 1.34770 * 120.00027 * 185.55509 * 8 7 6 11 11 C 1.46499 * 119.99927 * 174.92046 * 10 8 7 12 12 C 1.53004 * 109.46875 * 185.03988 * 11 10 8 13 13 C 1.50701 * 115.55256 * 65.18188 * 12 11 10 14 14 H 1.07997 * 119.99743 * 267.27299 * 13 12 11 15 15 C 1.37876 * 119.99958 * 87.26293 * 13 12 11 16 16 N 1.31520 * 119.99767 * 178.99542 * 15 13 12 17 17 Si 1.86800 * 120.00141 * 358.99594 * 15 13 12 18 18 H 1.48502 * 109.46896 * 91.49604 * 17 15 13 19 19 H 1.48504 * 109.47249 * 211.49505 * 17 15 13 20 20 H 1.48502 * 109.46898 * 331.49499 * 17 15 13 21 21 C 1.53001 * 117.50149 * 279.50808 * 12 11 10 22 22 C 1.53002 * 117.49868 * 210.84888 * 12 11 10 23 23 C 1.39714 * 119.85404 * 0.53133 * 7 6 5 24 24 C 1.38060 * 120.15804 * 359.74763 * 23 7 6 25 25 C 1.38086 * 120.30193 * 359.97257 * 24 23 7 26 26 C 1.50700 * 119.92722 * 180.02562 * 25 24 23 27 27 H 1.08994 * 109.47137 * 299.99921 * 1 2 3 28 28 H 1.08997 * 109.47245 * 60.00388 * 1 2 3 29 29 H 1.09008 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.15098 * 0.02562 * 6 5 3 31 31 H 0.97001 * 120.00199 * 354.91631 * 10 8 7 32 32 H 1.08993 * 109.47167 * 305.03719 * 11 10 8 33 33 H 1.08996 * 109.47212 * 65.04649 * 11 10 8 34 34 H 0.97001 * 119.99927 * 180.02562 * 16 15 13 35 35 H 1.09000 * 117.49665 * 0.02562 * 21 12 11 36 36 H 1.08992 * 117.49987 * 145.02108 * 21 12 11 37 37 H 1.08999 * 117.50028 * 214.98567 * 22 12 11 38 38 H 1.08998 * 117.49714 * 359.97438 * 22 12 11 39 39 H 1.08000 * 119.91900 * 179.72129 * 23 7 6 40 40 H 1.08007 * 119.84852 * 179.97438 * 24 23 7 41 41 H 1.08996 * 109.47307 * 263.70084 * 26 25 24 42 42 H 1.09000 * 109.47377 * 23.70483 * 26 25 24 43 43 H 1.09002 * 109.47101 * 143.70235 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2189 -0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.2994 0.1174 0.1357 7 6 5.6898 0.1988 0.1288 8 6 6.5045 -1.0274 0.2675 9 8 5.9651 -2.1165 0.2862 10 7 7.8450 -0.9374 0.3732 11 6 8.6426 -2.1408 0.6221 12 6 10.1079 -1.7489 0.8229 13 6 10.3961 -0.9142 2.0440 14 1 10.4029 0.1634 1.9722 15 6 10.6508 -1.5261 3.2530 16 7 10.9218 -0.7982 4.3143 17 14 10.6112 -3.3891 3.3835 18 1 11.9721 -3.9314 3.1406 19 1 10.1576 -3.7807 4.7423 20 1 9.6723 -3.9363 2.3714 21 6 10.9458 -1.4819 -0.4292 22 6 11.1745 -2.7560 0.3878 23 6 6.3131 1.4422 -0.0032 24 6 5.5541 2.5883 -0.1320 25 6 4.1753 2.5145 -0.1318 26 6 3.3551 3.7708 -0.2734 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8127 -0.8408 0.2416 31 1 8.2818 -0.0758 0.2845 32 1 8.2746 -2.6419 1.5173 33 1 8.5603 -2.8141 -0.2311 34 1 11.1014 -1.2287 5.1648 35 1 10.4530 -1.5849 -1.3959 36 1 11.7056 -0.7027 -0.3695 37 1 12.0847 -2.8145 0.9847 38 1 10.8323 -3.6978 -0.0410 39 1 7.3911 1.5070 -0.0042 40 1 6.0412 3.5470 -0.2333 41 1 3.0570 4.1233 0.7139 42 1 3.9490 4.5385 -0.7693 43 1 2.4660 3.5592 -0.8674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867979257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:45 Heat of formation + Delta-G solvation = -68.432767 kcal Electronic energy + Delta-G solvation = -25878.615908 eV Core-core repulsion = 22082.895626 eV Total energy + Delta-G solvation = -3795.720282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94126 -39.78248 -38.38477 -37.08059 -36.61283 -33.73995 -32.77527 -32.16930 -31.70792 -28.36402 -27.74034 -26.47538 -25.24172 -23.91687 -22.41578 -21.82449 -21.61929 -19.85356 -19.35430 -18.19098 -17.41890 -16.63893 -16.57152 -16.20592 -15.82268 -15.37343 -15.12266 -14.75420 -14.58154 -14.31130 -14.08100 -13.76672 -13.72925 -13.17133 -13.10108 -12.86316 -12.58041 -12.44352 -12.35491 -12.22642 -12.00091 -11.86429 -11.53465 -11.19784 -11.01480 -10.83120 -10.55887 -10.33692 -10.24453 -9.79988 -9.56443 -9.28626 -9.24557 -8.95458 -8.69666 -8.63227 -8.37287 -6.19913 -4.25094 0.43692 0.90744 2.24266 2.46451 3.05688 3.25594 3.36554 3.40178 3.53901 3.85267 4.36294 4.42469 4.55714 4.63695 4.78738 4.86367 4.93752 4.94143 5.02015 5.08746 5.14093 5.27297 5.39105 5.50803 5.56405 5.63599 5.71355 5.88669 5.95767 6.01289 6.02342 6.09160 6.12606 6.17342 6.34389 6.37273 6.45100 6.57720 6.65113 6.92344 7.00776 7.03888 7.52436 7.62869 8.02311 8.35743 8.60730 8.79359 9.43015 10.91265 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.003052 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.606426 B = 9173.515827 C = 9527.497726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.352 6.352 3 C 0.513 3.487 4 O -0.504 6.504 5 C -0.146 4.146 6 C -0.001 4.001 7 C -0.144 4.144 8 C 0.551 3.449 9 O -0.549 6.549 10 N -0.695 5.695 11 C 0.155 3.845 12 C -0.017 4.017 13 C -0.492 4.492 14 H 0.078 0.922 15 C 0.081 3.919 16 N -0.894 5.894 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.293 1.293 20 H -0.257 1.257 21 C -0.179 4.179 22 C -0.192 4.192 23 C -0.041 4.041 24 C -0.140 4.140 25 C 0.001 3.999 26 C -0.126 4.126 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.150 0.850 31 H 0.403 0.597 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 5.687 -10.590 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.269 6.269 3 C 0.359 3.641 4 O -0.394 6.394 5 C -0.147 4.147 6 C -0.020 4.020 7 C -0.147 4.147 8 C 0.337 3.663 9 O -0.429 6.429 10 N -0.344 5.344 11 C 0.032 3.968 12 C -0.018 4.018 13 C -0.529 4.529 14 H 0.096 0.904 15 C -0.123 4.123 16 N -0.530 5.530 17 Si 0.706 3.294 18 H -0.204 1.204 19 H -0.220 1.220 20 H -0.181 1.181 21 C -0.216 4.216 22 C -0.229 4.229 23 C -0.060 4.060 24 C -0.158 4.158 25 C 0.000 4.000 26 C -0.182 4.182 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.168 0.832 31 H 0.238 0.762 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.301 5.172 -10.342 19.179 hybrid contribution 0.223 -0.597 0.332 0.719 sum -15.078 4.574 -10.010 18.668 Atomic orbital electron populations 1.23289 0.75892 1.03898 1.02534 1.86592 1.23600 1.32530 1.84139 1.21122 0.88944 0.81427 0.72599 1.90777 1.66951 1.35446 1.46203 1.18826 0.89078 0.94430 1.12391 1.21547 0.92440 0.98387 0.89605 1.20051 0.93965 0.94037 1.06681 1.18102 0.82542 0.88220 0.77415 1.90744 1.72198 1.28432 1.51546 1.45765 1.05492 1.12607 1.70514 1.21220 0.90887 0.85193 0.99486 1.19629 0.87462 0.99224 0.95523 1.20168 1.49023 0.93716 0.90008 0.90381 1.24968 0.93616 0.98252 0.95440 1.69883 1.46732 1.35875 1.00547 0.86864 0.79015 0.86155 0.77370 1.20388 1.21991 1.18075 1.22859 1.04532 0.99556 0.94691 1.22950 1.02306 0.92865 1.04819 1.21725 1.00912 0.91428 0.91915 1.20984 0.92337 0.99126 1.03332 1.20192 0.94114 0.94002 0.91700 1.21182 1.00171 0.93252 1.03618 0.91774 0.91829 0.87901 0.83182 0.76175 0.91356 0.93608 0.92432 0.90832 0.89340 0.89107 0.90678 0.84286 0.84233 0.90139 0.91660 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.11 9.83 -40.51 -0.40 -4.51 16 3 C 0.51 6.51 7.82 34.61 0.27 6.78 16 4 O -0.50 -6.73 13.11 -19.24 -0.25 -6.98 16 5 C -0.15 -1.87 5.87 -105.04 -0.62 -2.49 16 6 C 0.00 -0.01 9.16 -38.76 -0.35 -0.36 16 7 C -0.14 -2.12 5.87 -105.02 -0.62 -2.74 16 8 C 0.55 9.93 7.76 -12.32 -0.10 9.84 16 9 O -0.55 -11.58 16.36 5.32 0.09 -11.49 16 10 N -0.69 -12.53 5.41 -61.25 -0.33 -12.86 16 11 C 0.16 3.18 5.13 -4.04 -0.02 3.15 16 12 C -0.02 -0.36 0.81 -155.66 -0.13 -0.49 16 13 C -0.49 -12.56 9.31 -34.44 -0.32 -12.88 16 14 H 0.08 2.14 8.06 -52.49 -0.42 1.71 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 17 Si 0.88 21.06 24.85 -169.99 -4.22 16.83 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.26 -5.90 5.77 56.52 0.33 -5.57 16 21 C -0.18 -3.28 9.96 -26.69 -0.27 -3.54 16 22 C -0.19 -3.80 7.56 -26.69 -0.20 -4.00 16 23 C -0.04 -0.50 9.53 -39.10 -0.37 -0.87 16 24 C -0.14 -1.47 9.64 -39.70 -0.38 -1.85 16 25 C 0.00 0.01 5.92 -104.13 -0.62 -0.61 16 26 C -0.13 -1.22 8.73 36.01 0.31 -0.91 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.15 2.15 7.22 -52.49 -0.38 1.77 16 31 H 0.40 6.50 6.50 -40.82 -0.27 6.23 16 32 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 33 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.09 1.90 7.21 -51.93 -0.37 1.52 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.14 1.48 6.41 -52.49 -0.34 1.14 16 40 H 0.14 1.09 8.05 -52.48 -0.42 0.66 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.49 8.04 -51.93 -0.42 0.07 16 43 H 0.09 1.00 5.82 -51.93 -0.30 0.70 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -31.57 360.04 -7.21 -38.78 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.86 Total: 7.56 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.43 Total: -7.50 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.44 Total: -38.11 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.56 Total: -22.99 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.22 Total: 16.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.57 -7.21 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867979257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.649 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds