Wall clock time and date at job start Tue Mar 31 2020 11:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34705 * 117.00131 * 2 1 4 4 O 1.21469 * 119.99811 * 359.97438 * 3 2 1 5 5 C 1.47737 * 120.00350 * 180.02562 * 3 2 1 6 6 C 1.39387 * 120.07657 * 353.48879 * 5 3 2 7 7 C 1.39287 * 119.70136 * 179.74696 * 6 5 3 8 8 C 1.47864 * 120.07226 * 180.23746 * 7 6 5 9 9 O 1.21554 * 119.99801 * 5.54690 * 8 7 6 10 10 N 1.34770 * 120.00027 * 185.55509 * 8 7 6 11 11 C 1.46499 * 119.99927 * 174.92046 * 10 8 7 12 12 C 1.53004 * 109.46875 * 185.03988 * 11 10 8 13 13 C 1.50701 * 115.55256 * 65.18188 * 12 11 10 14 14 H 1.07997 * 119.99743 * 267.27299 * 13 12 11 15 15 C 1.37876 * 119.99958 * 87.26293 * 13 12 11 16 16 N 1.31520 * 119.99767 * 178.99542 * 15 13 12 17 17 Si 1.86800 * 120.00141 * 358.99594 * 15 13 12 18 18 H 1.48502 * 109.46896 * 91.49604 * 17 15 13 19 19 H 1.48504 * 109.47249 * 211.49505 * 17 15 13 20 20 H 1.48502 * 109.46898 * 331.49499 * 17 15 13 21 21 C 1.53001 * 117.50149 * 279.50808 * 12 11 10 22 22 C 1.53002 * 117.49868 * 210.84888 * 12 11 10 23 23 C 1.39714 * 119.85404 * 0.53133 * 7 6 5 24 24 C 1.38060 * 120.15804 * 359.74763 * 23 7 6 25 25 C 1.38086 * 120.30193 * 359.97257 * 24 23 7 26 26 C 1.50700 * 119.92722 * 180.02562 * 25 24 23 27 27 H 1.08994 * 109.47137 * 299.99921 * 1 2 3 28 28 H 1.08997 * 109.47245 * 60.00388 * 1 2 3 29 29 H 1.09008 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.15098 * 0.02562 * 6 5 3 31 31 H 0.97001 * 120.00199 * 354.91631 * 10 8 7 32 32 H 1.08993 * 109.47167 * 305.03719 * 11 10 8 33 33 H 1.08996 * 109.47212 * 65.04649 * 11 10 8 34 34 H 0.97001 * 119.99927 * 180.02562 * 16 15 13 35 35 H 1.09000 * 117.49665 * 0.02562 * 21 12 11 36 36 H 1.08992 * 117.49987 * 145.02108 * 21 12 11 37 37 H 1.08999 * 117.50028 * 214.98567 * 22 12 11 38 38 H 1.08998 * 117.49714 * 359.97438 * 22 12 11 39 39 H 1.08000 * 119.91900 * 179.72129 * 23 7 6 40 40 H 1.08007 * 119.84852 * 179.97438 * 24 23 7 41 41 H 1.08996 * 109.47307 * 263.70084 * 26 25 24 42 42 H 1.09000 * 109.47377 * 23.70483 * 26 25 24 43 43 H 1.09002 * 109.47101 * 143.70235 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2189 -0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.2994 0.1174 0.1357 7 6 5.6898 0.1988 0.1288 8 6 6.5045 -1.0274 0.2675 9 8 5.9651 -2.1165 0.2862 10 7 7.8450 -0.9374 0.3732 11 6 8.6426 -2.1408 0.6221 12 6 10.1079 -1.7489 0.8229 13 6 10.3961 -0.9142 2.0440 14 1 10.4029 0.1634 1.9722 15 6 10.6508 -1.5261 3.2530 16 7 10.9218 -0.7982 4.3143 17 14 10.6112 -3.3891 3.3835 18 1 11.9721 -3.9314 3.1406 19 1 10.1576 -3.7807 4.7423 20 1 9.6723 -3.9363 2.3714 21 6 10.9458 -1.4819 -0.4292 22 6 11.1745 -2.7560 0.3878 23 6 6.3131 1.4422 -0.0032 24 6 5.5541 2.5883 -0.1320 25 6 4.1753 2.5145 -0.1318 26 6 3.3551 3.7708 -0.2734 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8127 -0.8408 0.2416 31 1 8.2818 -0.0758 0.2845 32 1 8.2746 -2.6419 1.5173 33 1 8.5603 -2.8141 -0.2311 34 1 11.1014 -1.2287 5.1648 35 1 10.4530 -1.5849 -1.3959 36 1 11.7056 -0.7027 -0.3695 37 1 12.0847 -2.8145 0.9847 38 1 10.8323 -3.6978 -0.0410 39 1 7.3911 1.5070 -0.0042 40 1 6.0412 3.5470 -0.2333 41 1 3.0570 4.1233 0.7139 42 1 3.9490 4.5385 -0.7693 43 1 2.4660 3.5592 -0.8674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867979257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:44 Heat of formation + Delta-G solvation = -87.789165 kcal Electronic energy + Delta-G solvation = -25879.455265 eV Core-core repulsion = 22082.895626 eV Total energy + Delta-G solvation = -3796.559638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.91299 -41.01855 -39.55609 -38.63953 -37.57024 -35.21554 -34.21417 -33.76851 -32.68326 -29.35162 -28.73269 -27.94469 -26.91564 -24.88658 -23.61260 -23.22132 -22.66634 -21.23321 -20.87713 -19.41994 -18.61577 -18.10113 -17.50238 -17.36267 -17.11920 -16.90997 -16.36541 -16.15264 -15.87163 -15.55892 -15.03309 -14.98036 -14.76931 -14.66199 -14.45946 -14.27111 -13.97758 -13.77720 -13.28154 -13.08470 -13.04715 -12.96800 -12.86634 -12.63786 -12.54084 -12.18377 -11.97361 -11.83153 -11.59891 -11.30366 -11.07170 -10.97655 -10.64728 -10.34474 -10.25248 -10.08682 -9.77620 -8.29067 -6.34979 -0.54139 -0.12961 1.26359 1.33938 1.40778 1.49974 1.62918 1.85612 2.17540 2.37081 2.72000 3.06539 3.23235 3.51158 3.58937 3.75207 3.86691 4.00172 4.05799 4.20542 4.26235 4.32499 4.37079 4.42015 4.44586 4.52533 4.66724 4.69298 4.79327 4.80873 4.83006 4.89371 5.01434 5.11622 5.13423 5.13878 5.24782 5.30865 5.44389 5.49536 5.53074 5.67920 5.70911 6.29312 6.59549 6.61413 6.74262 7.20421 7.35872 8.85285 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.003052 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.606426 B = 9173.515827 C = 9527.497726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.512 3.488 4 O -0.514 6.514 5 C -0.156 4.156 6 C -0.007 4.007 7 C -0.164 4.164 8 C 0.550 3.450 9 O -0.587 6.587 10 N -0.693 5.693 11 C 0.163 3.837 12 C -0.041 4.041 13 C -0.477 4.477 14 H 0.050 0.950 15 C 0.027 3.973 16 N -0.943 5.943 17 Si 0.925 3.075 18 H -0.267 1.267 19 H -0.305 1.305 20 H -0.241 1.241 21 C -0.149 4.149 22 C -0.193 4.193 23 C -0.038 4.038 24 C -0.128 4.128 25 C 0.004 3.996 26 C -0.123 4.123 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.411 0.589 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.264 0.736 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.028 6.361 -12.631 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.358 3.642 4 O -0.405 6.405 5 C -0.157 4.157 6 C -0.026 4.026 7 C -0.167 4.167 8 C 0.339 3.661 9 O -0.469 6.469 10 N -0.342 5.342 11 C 0.039 3.961 12 C -0.042 4.042 13 C -0.515 4.515 14 H 0.068 0.932 15 C -0.171 4.171 16 N -0.583 5.583 17 Si 0.751 3.249 18 H -0.192 1.192 19 H -0.232 1.232 20 H -0.164 1.164 21 C -0.187 4.187 22 C -0.231 4.231 23 C -0.056 4.056 24 C -0.146 4.146 25 C 0.004 3.996 26 C -0.179 4.179 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.249 0.751 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.171 0.829 40 H 0.194 0.806 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.559 5.853 -12.417 20.749 hybrid contribution 0.225 -0.698 0.918 1.175 sum -15.334 5.155 -11.499 19.847 Atomic orbital electron populations 1.23599 0.73949 1.05780 1.02979 1.86584 1.25617 1.32138 1.83811 1.21139 0.88991 0.81601 0.72433 1.90767 1.67164 1.35702 1.46861 1.18963 0.89295 0.94699 1.12770 1.21443 0.92388 0.98496 0.90301 1.19829 0.93793 0.93654 1.09396 1.18576 0.82481 0.88873 0.76212 1.90712 1.72785 1.30160 1.53286 1.45698 1.05583 1.12431 1.70486 1.20963 0.90242 0.86123 0.98737 1.19449 0.88400 1.00730 0.95648 1.20375 1.46594 0.93021 0.91468 0.93212 1.25678 0.94085 1.01925 0.95440 1.70009 1.49643 1.37467 1.01169 0.86094 0.79723 0.82051 0.76996 1.19212 1.23246 1.16433 1.22900 1.02836 0.98365 0.94550 1.23021 1.00861 0.94346 1.04886 1.21909 1.01793 0.90822 0.91101 1.21355 0.91824 0.99978 1.01432 1.20542 0.94831 0.94070 0.90178 1.21195 0.99937 0.92989 1.03753 0.91536 0.91177 0.85409 0.84453 0.75126 0.94375 0.92138 0.92746 0.87701 0.89341 0.90356 0.88369 0.82853 0.80609 0.90012 0.88831 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.37 -8.46 9.83 -56.15 -0.55 -9.01 16 3 C 0.51 12.78 7.82 70.33 0.55 13.33 16 4 O -0.51 -13.32 13.11 19.94 0.26 -13.06 16 5 C -0.16 -3.89 5.87 -20.13 -0.12 -4.01 16 6 C -0.01 -0.20 9.16 22.80 0.21 0.01 16 7 C -0.16 -4.74 5.87 -20.12 -0.12 -4.86 16 8 C 0.55 19.83 7.76 86.79 0.67 20.51 16 9 O -0.59 -25.16 16.36 -3.88 -0.06 -25.23 16 10 N -0.69 -24.43 5.41 -465.97 -2.52 -26.95 16 11 C 0.16 6.49 5.13 86.38 0.44 6.93 16 12 C -0.04 -1.68 0.81 -52.92 -0.04 -1.72 16 13 C -0.48 -24.41 9.31 25.60 0.24 -24.17 16 14 H 0.05 2.77 8.06 -2.91 -0.02 2.74 16 15 C 0.03 1.48 5.47 84.65 0.46 1.94 16 16 N -0.94 -56.43 13.96 21.45 0.30 -56.13 16 17 Si 0.93 43.49 24.85 68.60 1.70 45.20 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 20 H -0.24 -10.62 5.77 99.48 0.57 -10.05 16 21 C -0.15 -4.99 9.96 30.62 0.30 -4.68 16 22 C -0.19 -7.14 7.56 30.62 0.23 -6.91 16 23 C -0.04 -0.84 9.53 22.58 0.22 -0.62 16 24 C -0.13 -2.30 9.64 22.19 0.21 -2.09 16 25 C 0.00 0.09 5.92 -19.54 -0.12 -0.02 16 26 C -0.12 -2.05 8.73 71.24 0.62 -1.43 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.14 4.13 7.22 -2.91 -0.02 4.11 16 31 H 0.41 12.78 6.50 -92.71 -0.60 12.18 16 32 H 0.04 1.73 6.76 -2.39 -0.02 1.72 16 33 H 0.06 2.23 8.09 -2.39 -0.02 2.21 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.08 3.10 7.21 -2.39 -0.02 3.09 16 38 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.15 2.90 6.41 -2.91 -0.02 2.88 16 40 H 0.18 1.89 8.05 -2.91 -0.02 1.87 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.04 8.04 -2.39 -0.02 1.02 16 43 H 0.08 1.62 5.82 -2.39 -0.01 1.60 16 Total: -1.00 -69.96 360.04 4.40 -65.56 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.31 Total: 25.78 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.97 Total: -6.15 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -2.22 Total: -83.08 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.35 Total: -47.30 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.70 Total: 45.20 kcal Total: -69.96 4.40 -65.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867979257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.230 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds