Wall clock time and date at job start Tue Mar 31 2020 11:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99876 * 2 1 4 4 N 1.46502 * 109.47246 * 124.67482 * 3 2 1 5 5 C 1.46499 * 120.00379 * 282.14492 * 4 3 2 6 6 C 1.50700 * 109.46838 * 269.99448 * 5 4 3 7 7 H 1.08000 * 120.00173 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99825 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00018 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47247 * 60.00183 * 10 8 6 12 12 H 1.48502 * 109.47109 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46850 * 300.00292 * 10 8 6 14 14 C 1.34783 * 119.99612 * 102.13804 * 4 3 2 15 15 O 1.21549 * 119.99906 * 176.05542 * 14 4 3 16 16 C 1.47858 * 120.00145 * 356.06706 * 14 4 3 17 17 C 1.39721 * 120.06620 * 307.82686 * 16 14 4 18 18 C 1.38068 * 120.15014 * 180.23303 * 17 16 14 19 19 C 1.38084 * 120.30620 * 359.49555 * 18 17 16 20 20 C 1.50699 * 119.93234 * 180.23420 * 19 18 17 21 21 C 1.39711 * 120.13529 * 0.50488 * 19 18 17 22 22 C 1.47745 * 120.07894 * 179.72982 * 21 19 18 23 23 O 1.21473 * 119.99736 * 354.13530 * 22 21 19 24 24 O 1.34707 * 120.00448 * 174.14522 * 22 21 19 25 25 C 1.45202 * 117.00137 * 179.97438 * 24 22 21 26 26 C 1.39276 * 120.07633 * 127.81040 * 16 14 4 27 27 H 1.08006 * 120.00033 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00442 * 180.02562 * 1 2 3 29 29 H 1.07991 * 119.99773 * 179.97438 * 2 1 3 30 30 H 1.09008 * 109.47597 * 4.67784 * 3 2 1 31 31 H 1.09002 * 109.47079 * 244.67954 * 3 2 1 32 32 H 1.08992 * 109.47043 * 29.99554 * 5 4 3 33 33 H 1.08999 * 109.46813 * 149.99848 * 5 4 3 34 34 H 0.97000 * 120.00250 * 179.97438 * 9 8 6 35 35 H 1.07991 * 119.92045 * 359.96147 * 17 16 14 36 36 H 1.08005 * 119.84245 * 179.74867 * 18 17 16 37 37 H 1.08999 * 109.46832 * 263.69097 * 20 19 18 38 38 H 1.08999 * 109.47103 * 23.68527 * 20 19 18 39 39 H 1.09000 * 109.46935 * 143.68346 * 20 19 18 40 40 H 1.09007 * 109.46877 * 179.97438 * 25 24 22 41 41 H 1.08997 * 109.46909 * 299.99735 * 25 24 22 42 42 H 1.08995 * 109.47034 * 59.99599 * 25 24 22 43 43 H 1.08002 * 120.14533 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9881 1.3351 1.1359 5 6 2.4852 1.6169 2.4827 6 6 2.5266 3.1023 2.7338 7 1 2.8907 3.7697 1.9667 8 6 2.0987 3.6093 3.9424 9 7 1.6548 2.7967 4.8763 10 14 2.1494 5.4506 4.2534 11 1 1.3006 6.1452 3.2523 12 1 1.6397 5.7362 5.6186 13 1 3.5487 5.9339 4.1367 14 6 4.3016 1.1034 0.9418 15 8 5.0794 1.1988 1.8710 16 6 4.7965 0.7334 -0.4014 17 6 4.2071 -0.3250 -1.0976 18 6 4.6710 -0.6750 -2.3500 19 6 5.7125 0.0237 -2.9277 20 6 6.2087 -0.3623 -4.2973 21 6 6.3110 1.0841 -2.2426 22 6 7.4293 1.8270 -2.8594 23 8 7.8996 1.4509 -3.9144 24 8 7.9274 2.9212 -2.2519 25 6 9.0261 3.6008 -2.9149 26 6 5.8509 1.4393 -0.9757 27 1 -0.5400 0.9354 0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3581 2.1320 0.0838 31 1 2.6257 1.4000 -0.9290 32 1 1.4581 1.2624 2.5685 33 1 3.1083 1.1068 3.2173 34 1 1.3541 3.1534 5.7268 35 1 3.3897 -0.8732 -0.6531 36 1 4.2144 -1.4966 -2.8820 37 1 7.0735 -1.0184 -4.1988 38 1 5.4175 -0.8826 -4.8371 39 1 6.4938 0.5350 -4.8466 40 1 9.3310 4.4630 -2.3216 41 1 9.8671 2.9154 -3.0193 42 1 8.7045 3.9343 -3.9015 43 1 6.3095 2.2586 -0.4420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868510766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:47 Heat of formation + Delta-G solvation = -83.443368 kcal Electronic energy + Delta-G solvation = -26361.119563 eV Core-core repulsion = 22564.748372 eV Total energy + Delta-G solvation = -3796.371191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.94214 -41.09870 -39.41106 -37.57927 -37.34640 -35.15458 -33.85859 -33.62625 -32.73336 -29.93519 -28.96109 -28.04487 -26.91380 -25.39488 -24.80791 -23.05558 -22.38739 -21.30190 -20.22443 -18.98858 -18.61837 -18.27492 -17.53021 -17.49578 -17.26026 -16.64836 -16.61167 -16.14838 -15.74519 -15.43688 -15.06069 -14.95258 -14.58906 -14.41548 -14.32633 -14.12616 -13.92758 -13.37589 -13.27281 -13.10551 -13.01473 -12.94917 -12.83551 -12.78130 -12.59267 -12.56071 -12.22396 -12.15154 -11.83422 -11.69416 -11.22385 -10.81860 -10.63675 -10.35632 -10.17201 -9.84792 -9.52983 -8.22569 -6.36588 -0.49001 -0.02349 1.29674 1.35181 1.37544 1.40677 1.47901 1.63205 1.76163 2.28789 2.42513 2.61937 3.07584 3.45027 3.54681 3.74079 3.78428 4.02686 4.10296 4.21622 4.23355 4.25041 4.31747 4.35753 4.51346 4.67057 4.68798 4.81736 4.83510 4.85141 4.92278 5.05188 5.09167 5.14154 5.20792 5.22744 5.27221 5.46620 5.50050 5.68889 5.74170 5.75217 5.95714 6.05596 6.59809 6.62144 6.72110 7.21852 7.37679 8.84701 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.003970 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.846587 B = 7051.416714 C = 8681.788240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.187 4.187 3 C 0.130 3.870 4 N -0.586 5.586 5 C 0.266 3.734 6 C -0.545 4.545 7 H 0.051 0.949 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.964 3.036 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.542 3.458 15 O -0.588 6.588 16 C -0.149 4.149 17 C -0.046 4.046 18 C -0.118 4.118 19 C 0.000 4.000 20 C -0.121 4.121 21 C -0.149 4.149 22 C 0.511 3.489 23 O -0.512 6.512 24 O -0.369 6.369 25 C 0.030 3.970 26 C -0.023 4.023 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.030 0.970 33 H -0.002 1.002 34 H 0.268 0.732 35 H 0.154 0.846 36 H 0.182 0.818 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -6.224 -21.349 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.206 4.206 3 C 0.008 3.992 4 N -0.315 5.315 5 C 0.145 3.855 6 C -0.584 4.584 7 H 0.069 0.931 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.788 3.212 11 H -0.185 1.185 12 H -0.202 1.202 13 H -0.205 1.205 14 C 0.330 3.670 15 O -0.470 6.470 16 C -0.152 4.152 17 C -0.064 4.064 18 C -0.136 4.136 19 C -0.001 4.001 20 C -0.176 4.176 21 C -0.150 4.150 22 C 0.358 3.642 23 O -0.403 6.403 24 O -0.285 6.285 25 C -0.063 4.063 26 C -0.042 4.042 27 H 0.114 0.886 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.171 0.829 36 H 0.200 0.800 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.143 0.857 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.143 -6.228 -20.984 22.484 hybrid contribution 0.304 1.251 1.043 1.657 sum 5.446 -4.976 -19.941 21.262 Atomic orbital electron populations 1.24079 0.95498 1.02995 0.97429 1.23325 0.96752 0.97865 1.02641 1.20892 0.92662 0.96887 0.88710 1.48156 1.06474 1.66825 1.10053 1.18737 0.93483 0.94963 0.78335 1.21649 1.43002 0.93169 1.00552 0.93111 1.25791 0.94487 1.03073 0.95388 1.70031 1.43467 1.36820 1.06211 0.85527 0.78433 0.79408 0.77815 1.18499 1.20167 1.20478 1.18902 0.82389 0.77135 0.88523 1.90739 1.56378 1.54391 1.45455 1.19775 0.99834 1.01198 0.94425 1.22013 0.97176 0.93146 0.94045 1.21351 0.96486 1.01144 0.94595 1.20509 0.92622 0.90306 0.96660 1.21173 1.02221 1.03317 0.90927 1.18927 0.99244 1.00814 0.95995 1.21166 0.81968 0.78755 0.82311 1.90760 1.59442 1.67564 1.22522 1.86597 1.49905 1.39708 1.52296 1.23591 0.86355 0.97309 0.99032 1.21305 0.92444 0.97120 0.93373 0.88567 0.86077 0.85852 0.90778 0.88090 0.95219 0.98345 0.92348 0.82861 0.80031 0.89994 0.88609 0.90182 0.85696 0.91325 0.91097 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 14.32 67.78 0.97 -2.72 16 2 C -0.19 -4.77 8.81 25.65 0.23 -4.55 16 3 C 0.13 4.15 5.36 85.63 0.46 4.61 16 4 N -0.59 -25.35 2.47 -833.90 -2.06 -27.40 16 5 C 0.27 14.39 5.10 85.63 0.44 14.83 16 6 C -0.55 -31.77 9.39 25.60 0.24 -31.53 16 7 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 8 C 0.01 0.69 5.46 84.66 0.46 1.15 16 9 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 10 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 C 0.54 23.87 7.17 86.79 0.62 24.49 16 15 O -0.59 -32.19 16.68 -3.87 -0.06 -32.25 16 16 C -0.15 -4.86 4.59 -20.12 -0.09 -4.96 16 17 C -0.05 -1.06 7.77 22.59 0.18 -0.88 16 18 C -0.12 -2.02 9.64 22.19 0.21 -1.81 16 19 C 0.00 -0.01 5.92 -19.54 -0.12 -0.12 16 20 C -0.12 -1.93 8.72 71.24 0.62 -1.31 16 21 C -0.15 -3.91 5.87 -20.13 -0.12 -4.03 16 22 C 0.51 13.55 7.83 70.34 0.55 14.10 16 23 O -0.51 -13.65 13.10 19.93 0.26 -13.39 16 24 O -0.37 -9.47 9.83 -56.17 -0.55 -10.02 16 25 C 0.03 0.51 10.56 113.37 1.20 1.71 16 26 C -0.02 -0.73 9.31 22.80 0.21 -0.52 16 27 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 28 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.12 2.71 6.04 -2.92 -0.02 2.69 16 30 H 0.07 2.50 7.79 -2.38 -0.02 2.48 16 31 H 0.10 2.73 5.75 -2.39 -0.01 2.72 16 32 H 0.03 1.62 8.00 -2.39 -0.02 1.60 16 33 H 0.00 -0.10 7.48 -2.39 -0.02 -0.12 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.15 3.12 4.83 -2.92 -0.01 3.10 16 36 H 0.18 1.56 8.05 -2.91 -0.02 1.53 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 0.94 8.04 -2.39 -0.02 0.92 16 39 H 0.08 1.56 5.83 -2.39 -0.01 1.55 16 40 H 0.12 1.52 8.14 -2.38 -0.02 1.51 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.12 4.31 7.62 -2.91 -0.02 4.29 16 Total: -1.00 -77.59 366.03 6.98 -70.60 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.02 Total: 12.46 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.06 Total: 8.46 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -1.77 Total: -83.08 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.36 Total: -55.66 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -77.59 6.98 -70.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868510766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.842 kcal (2) G-P(sol) polarization free energy of solvation -77.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds