Wall clock time and date at job start Tue Mar 31 2020 11:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 119.99675 * 2 1 4 4 H 1.48503 * 109.47313 * 270.00088 * 3 2 1 5 5 H 1.48501 * 109.47257 * 29.99987 * 3 2 1 6 6 H 1.48504 * 109.47369 * 150.00232 * 3 2 1 7 7 C 1.38648 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00205 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00253 * 185.05734 * 9 7 2 11 11 C 1.38907 * 120.06738 * 354.45850 * 10 9 7 12 12 C 1.38076 * 119.92844 * 180.02562 * 11 10 9 13 13 C 1.38324 * 120.07365 * 0.02562 * 12 11 10 14 14 C 1.38282 * 120.13417 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.96334 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47200 * 89.99387 * 15 14 13 17 17 O 1.21287 * 120.00252 * 359.97438 * 16 15 14 18 18 N 1.34771 * 119.99972 * 180.02562 * 16 15 14 19 19 C 1.47196 * 126.70657 * 180.02562 * 18 16 15 20 20 C 1.53735 * 106.43584 * 148.61624 * 19 18 16 21 21 H 1.08993 * 112.45714 * 255.24109 * 20 19 18 22 22 C 1.54419 * 109.03615 * 129.75597 * 20 19 18 23 23 O 1.44383 * 104.89386 * 224.11997 * 22 20 19 24 24 C 1.44387 * 105.26722 * 40.70934 * 23 22 20 25 25 C 1.54418 * 104.98679 * 319.23768 * 24 23 22 26 26 H 1.09001 * 112.48772 * 262.02249 * 25 24 23 27 27 C 1.47197 * 126.70083 * 359.97438 * 18 16 15 28 28 C 1.38121 * 120.06717 * 0.26626 * 14 13 12 29 29 H 0.96992 * 120.00294 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03167 * 359.97438 * 11 10 9 31 31 H 1.07999 * 119.96070 * 179.97438 * 12 11 10 32 32 H 1.07994 * 119.93418 * 179.97438 * 13 12 11 33 33 H 1.08998 * 109.46817 * 329.99278 * 15 14 13 34 34 H 1.08995 * 109.46752 * 209.99300 * 15 14 13 35 35 H 1.09000 * 110.06168 * 29.37373 * 19 18 16 36 36 H 1.08999 * 110.10578 * 267.88942 * 19 18 16 37 37 H 1.08997 * 110.35053 * 105.25872 * 22 20 19 38 38 H 1.09001 * 110.35225 * 342.97540 * 22 20 19 39 39 H 1.09001 * 110.36001 * 78.14230 * 24 23 22 40 40 H 1.08997 * 110.35840 * 200.33604 * 24 23 22 41 41 H 1.08993 * 110.06945 * 330.62458 * 27 18 16 42 42 H 1.09004 * 110.05850 * 92.08717 * 27 18 16 43 43 H 1.08004 * 120.02790 * 179.70654 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4690 -2.1360 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9736 -2.4054 -0.1072 11 6 3.2235 -3.5745 -0.0952 12 6 3.8535 -4.7983 -0.2039 13 6 5.2301 -4.8611 -0.3241 14 6 5.9797 -3.6991 -0.3353 15 6 7.4792 -3.7719 -0.4670 16 6 7.8579 -3.7318 -1.9251 17 8 6.9951 -3.6525 -2.7738 18 7 9.1553 -3.7852 -2.2860 19 6 9.6889 -3.7563 -3.6576 20 6 11.0583 -3.0623 -3.5771 21 1 11.0304 -2.0411 -3.9570 22 6 12.1078 -3.9334 -4.3010 23 8 13.2561 -3.9351 -3.4258 24 6 12.7173 -4.0573 -2.0918 25 6 11.4710 -3.1456 -2.0795 26 1 11.6746 -2.1670 -1.6448 27 6 10.3156 -3.8828 -1.3856 28 6 5.3559 -2.4721 -0.2209 29 1 -0.4850 0.8400 0.0004 30 1 2.1488 -3.5262 -0.0001 31 1 3.2709 -5.7076 -0.1942 32 1 5.7206 -5.8195 -0.4085 33 1 7.8381 -4.7007 -0.0238 34 1 7.9308 -2.9247 0.0491 35 1 9.0206 -3.1908 -4.3069 36 1 9.8060 -4.7720 -4.0355 37 1 12.3659 -3.4938 -5.2644 38 1 11.7315 -4.9476 -4.4347 39 1 12.4333 -5.0903 -1.8907 40 1 13.4448 -3.7146 -1.3561 41 1 10.0898 -3.4065 -0.4316 42 1 10.5796 -4.9285 -1.2279 43 1 5.9423 -1.5651 -0.2249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872315806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:50 Heat of formation + Delta-G solvation = -70.455114 kcal Electronic energy + Delta-G solvation = -25789.798328 eV Core-core repulsion = 21993.990350 eV Total energy + Delta-G solvation = -3795.807978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08657 -39.54355 -38.78080 -36.80773 -36.25950 -32.60288 -32.31986 -31.65333 -31.27806 -29.42858 -27.58032 -26.55981 -25.26666 -24.75948 -22.97166 -21.78462 -20.94018 -20.39233 -19.39751 -17.68785 -17.62344 -17.07187 -16.69722 -16.16162 -16.11787 -15.45623 -15.28890 -15.13234 -14.74977 -14.39251 -13.96991 -13.79382 -13.56797 -13.47124 -13.27320 -12.77247 -12.72593 -12.56909 -12.40799 -12.17503 -11.76224 -11.70956 -11.53162 -11.40398 -11.28841 -11.25501 -10.82786 -10.74445 -10.73477 -10.31815 -10.13655 -9.82464 -9.36149 -8.93667 -8.84068 -8.13150 -7.33327 -6.37877 -4.04589 2.00575 2.30711 2.62515 2.82438 3.23984 3.28409 3.41997 3.42272 3.70464 4.17305 4.23245 4.26796 4.44614 4.46162 4.61755 4.68744 4.72280 4.76542 4.86968 5.02803 5.11739 5.14325 5.16217 5.22297 5.25998 5.29851 5.32969 5.48766 5.52573 5.55387 5.66742 5.69755 5.85357 6.00330 6.14253 6.25610 6.27407 6.54809 6.80886 7.11650 7.23027 7.31591 7.34713 7.63284 7.84031 8.07693 8.14822 8.97657 9.60466 10.70018 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002661 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.311788 B =10518.517225 C =11276.358619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.161 3.839 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.037 4.037 15 C -0.088 4.088 16 C 0.533 3.467 17 O -0.514 6.514 18 N -0.627 5.627 19 C 0.110 3.890 20 C -0.132 4.132 21 H 0.103 0.897 22 C 0.051 3.949 23 O -0.374 6.374 24 C 0.051 3.949 25 C -0.132 4.132 26 H 0.105 0.895 27 C 0.106 3.894 28 C -0.174 4.174 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.610 -9.107 -2.955 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.125 6.125 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.207 4.207 14 C -0.037 4.037 15 C -0.128 4.128 16 C 0.322 3.678 17 O -0.387 6.387 18 N -0.363 5.363 19 C -0.013 4.013 20 C -0.152 4.152 21 H 0.122 0.878 22 C -0.026 4.026 23 O -0.292 6.292 24 C -0.026 4.026 25 C -0.152 4.152 26 H 0.123 0.877 27 C -0.018 4.018 28 C -0.194 4.194 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 25.096 -8.684 -3.425 26.776 hybrid contribution -0.084 0.661 0.017 0.666 sum 25.012 -8.024 -3.409 26.488 Atomic orbital electron populations 1.69645 1.05535 1.28406 1.48375 1.24452 0.95018 0.98772 0.95769 0.86187 0.80282 0.81496 0.78955 1.19907 1.20817 1.18416 1.20763 0.76904 0.96623 1.52094 0.87643 1.83566 1.22589 1.25648 1.80656 1.18998 0.91474 0.85574 0.93069 1.21306 1.01136 0.91945 1.09207 1.20737 0.94074 0.96765 0.97817 1.20411 0.93962 0.96451 1.09837 1.18657 0.92111 0.93096 0.99883 1.20564 0.95148 1.04447 0.92592 1.20508 0.79918 0.75646 0.91753 1.90785 1.47554 1.47540 1.52823 1.48637 1.05292 1.75080 1.07318 1.22022 0.93566 1.00457 0.85252 1.23443 0.95256 1.01211 0.95277 0.87845 1.23600 0.85477 0.98964 0.94528 1.89139 1.28944 1.94778 1.16339 1.23592 0.94741 0.98525 0.85730 1.23408 0.95364 1.00660 0.95748 0.87683 1.22127 0.85030 1.00317 0.94301 1.19924 0.92029 0.96883 1.10542 0.91111 0.84951 0.87132 0.87747 0.88318 0.88306 0.89794 0.91242 0.88638 0.91610 0.91638 0.88634 0.89808 0.90862 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.96 55.48 0.77 -25.16 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 22.16 28.62 -169.99 -4.86 17.30 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.39 -11.23 9.95 30.88 0.31 -10.92 16 8 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 9 O -0.22 -5.97 8.59 0.04 0.00 -5.97 16 10 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 11 C -0.22 -4.88 9.17 -39.39 -0.36 -5.24 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.30 9.70 -39.53 -0.38 -3.68 16 14 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 15 C -0.09 -1.11 4.81 -29.03 -0.14 -1.25 16 16 C 0.53 7.60 7.87 -10.99 -0.09 7.52 16 17 O -0.51 -9.93 16.26 5.55 0.09 -9.84 16 18 N -0.63 -6.52 3.32 -171.74 -0.57 -7.09 16 19 C 0.11 0.99 6.55 -3.28 -0.02 0.97 16 20 C -0.13 -0.90 4.19 -88.13 -0.37 -1.27 16 21 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 22 C 0.05 0.32 7.17 37.90 0.27 0.60 16 23 O -0.37 -3.03 11.65 -35.23 -0.41 -3.44 16 24 C 0.05 0.28 7.17 37.90 0.27 0.56 16 25 C -0.13 -0.78 4.20 -88.19 -0.37 -1.15 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 C 0.11 0.69 6.37 -3.34 -0.02 0.67 16 28 C -0.17 -3.62 9.64 -39.40 -0.38 -4.00 16 29 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.13 3.10 5.64 -52.49 -0.30 2.80 16 31 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.10 1.04 7.80 -51.93 -0.41 0.64 16 35 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 36 H 0.07 0.56 7.08 -51.93 -0.37 0.20 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.38 7.13 -51.93 -0.37 0.01 16 39 H 0.07 0.31 7.14 -51.93 -0.37 -0.06 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.45 7.31 -51.93 -0.38 0.07 16 42 H 0.07 0.38 7.09 -51.93 -0.37 0.01 16 43 H 0.11 2.21 8.06 -52.48 -0.42 1.78 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -34.72 352.72 -7.93 -42.64 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.77 Total: 1.09 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.49 Total: -14.84 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.20 Total: -32.25 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.32 Total: -19.25 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.72 -7.93 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872315806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.813 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds