Wall clock time and date at job start Tue Mar 31 2020 11:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 119.99675 * 2 1 4 4 H 1.48503 * 109.47313 * 270.00088 * 3 2 1 5 5 H 1.48501 * 109.47257 * 29.99987 * 3 2 1 6 6 H 1.48504 * 109.47369 * 150.00232 * 3 2 1 7 7 C 1.38648 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00205 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00253 * 185.05734 * 9 7 2 11 11 C 1.38907 * 120.06738 * 354.45850 * 10 9 7 12 12 C 1.38076 * 119.92844 * 180.02562 * 11 10 9 13 13 C 1.38324 * 120.07365 * 0.02562 * 12 11 10 14 14 C 1.38282 * 120.13417 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.96334 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47200 * 89.99387 * 15 14 13 17 17 O 1.21287 * 120.00252 * 359.97438 * 16 15 14 18 18 N 1.34771 * 119.99972 * 180.02562 * 16 15 14 19 19 C 1.47196 * 126.70657 * 180.02562 * 18 16 15 20 20 C 1.53735 * 106.43584 * 148.61624 * 19 18 16 21 21 H 1.08993 * 112.45714 * 255.24109 * 20 19 18 22 22 C 1.54419 * 109.03615 * 129.75597 * 20 19 18 23 23 O 1.44383 * 104.89386 * 224.11997 * 22 20 19 24 24 C 1.44387 * 105.26722 * 40.70934 * 23 22 20 25 25 C 1.54418 * 104.98679 * 319.23768 * 24 23 22 26 26 H 1.09001 * 112.48772 * 262.02249 * 25 24 23 27 27 C 1.47197 * 126.70083 * 359.97438 * 18 16 15 28 28 C 1.38121 * 120.06717 * 0.26626 * 14 13 12 29 29 H 0.96992 * 120.00294 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03167 * 359.97438 * 11 10 9 31 31 H 1.07999 * 119.96070 * 179.97438 * 12 11 10 32 32 H 1.07994 * 119.93418 * 179.97438 * 13 12 11 33 33 H 1.08998 * 109.46817 * 329.99278 * 15 14 13 34 34 H 1.08995 * 109.46752 * 209.99300 * 15 14 13 35 35 H 1.09000 * 110.06168 * 29.37373 * 19 18 16 36 36 H 1.08999 * 110.10578 * 267.88942 * 19 18 16 37 37 H 1.08997 * 110.35053 * 105.25872 * 22 20 19 38 38 H 1.09001 * 110.35225 * 342.97540 * 22 20 19 39 39 H 1.09001 * 110.36001 * 78.14230 * 24 23 22 40 40 H 1.08997 * 110.35840 * 200.33604 * 24 23 22 41 41 H 1.08993 * 110.06945 * 330.62458 * 27 18 16 42 42 H 1.09004 * 110.05850 * 92.08717 * 27 18 16 43 43 H 1.08004 * 120.02790 * 179.70654 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4690 -2.1360 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9736 -2.4054 -0.1072 11 6 3.2235 -3.5745 -0.0952 12 6 3.8535 -4.7983 -0.2039 13 6 5.2301 -4.8611 -0.3241 14 6 5.9797 -3.6991 -0.3353 15 6 7.4792 -3.7719 -0.4670 16 6 7.8579 -3.7318 -1.9251 17 8 6.9951 -3.6525 -2.7738 18 7 9.1553 -3.7852 -2.2860 19 6 9.6889 -3.7563 -3.6576 20 6 11.0583 -3.0623 -3.5771 21 1 11.0304 -2.0411 -3.9570 22 6 12.1078 -3.9334 -4.3010 23 8 13.2561 -3.9351 -3.4258 24 6 12.7173 -4.0573 -2.0918 25 6 11.4710 -3.1456 -2.0795 26 1 11.6746 -2.1670 -1.6448 27 6 10.3156 -3.8828 -1.3856 28 6 5.3559 -2.4721 -0.2209 29 1 -0.4850 0.8400 0.0004 30 1 2.1488 -3.5262 -0.0001 31 1 3.2709 -5.7076 -0.1942 32 1 5.7206 -5.8195 -0.4085 33 1 7.8381 -4.7007 -0.0238 34 1 7.9308 -2.9247 0.0491 35 1 9.0206 -3.1908 -4.3069 36 1 9.8060 -4.7720 -4.0355 37 1 12.3659 -3.4938 -5.2644 38 1 11.7315 -4.9476 -4.4347 39 1 12.4333 -5.0903 -1.8907 40 1 13.4448 -3.7146 -1.3561 41 1 10.0898 -3.4065 -0.4316 42 1 10.5796 -4.9285 -1.2279 43 1 5.9423 -1.5651 -0.2249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872315806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:50 Heat of formation + Delta-G solvation = -93.975045 kcal Electronic energy + Delta-G solvation = -25790.818228 eV Core-core repulsion = 21993.990350 eV Total energy + Delta-G solvation = -3796.827878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77252 -40.96064 -40.03979 -38.33038 -37.17441 -34.49677 -33.73004 -32.54799 -31.84791 -31.08274 -28.78300 -27.29328 -27.08311 -25.66477 -23.54109 -23.31320 -22.47911 -20.99157 -20.44576 -19.63127 -18.80495 -18.39800 -17.38387 -16.95115 -16.89700 -16.70056 -16.54572 -16.18560 -15.98545 -15.74951 -15.62007 -15.11336 -14.90204 -14.45860 -14.33040 -14.20542 -13.99619 -13.90940 -13.45693 -13.21226 -13.05343 -12.85085 -12.54186 -12.48484 -12.37955 -12.24093 -12.05096 -11.96638 -11.91593 -11.73466 -11.32967 -10.97641 -10.88757 -10.78667 -9.77572 -9.68719 -9.08119 -8.51522 -6.24382 0.45834 0.68372 1.28240 1.33443 1.49326 1.59799 1.94709 2.26435 2.75632 2.95034 3.00209 3.13252 3.20548 3.63867 3.72194 3.76865 3.96556 4.02763 4.05868 4.16615 4.19041 4.26520 4.29296 4.38855 4.52659 4.56844 4.63138 4.67359 4.69064 4.72004 4.78475 4.88069 4.92478 4.95143 5.03581 5.15432 5.21974 5.28316 5.37780 5.63002 5.70607 5.75159 5.81402 5.90004 6.22860 6.47001 6.82714 7.14391 7.57357 8.60381 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002661 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.311788 B =10518.517225 C =11276.358619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.119 3.881 11 C -0.240 4.240 12 C -0.078 4.078 13 C -0.170 4.170 14 C -0.030 4.030 15 C -0.083 4.083 16 C 0.529 3.471 17 O -0.580 6.580 18 N -0.621 5.621 19 C 0.106 3.894 20 C -0.129 4.129 21 H 0.101 0.899 22 C 0.053 3.947 23 O -0.396 6.396 24 C 0.050 3.950 25 C -0.128 4.128 26 H 0.112 0.888 27 C 0.100 3.900 28 C -0.181 4.181 29 H 0.285 0.715 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.126 0.874 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.805 -10.471 -2.214 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.095 4.095 13 C -0.189 4.189 14 C -0.030 4.030 15 C -0.122 4.122 16 C 0.320 3.680 17 O -0.459 6.459 18 N -0.355 5.355 19 C -0.017 4.017 20 C -0.148 4.148 21 H 0.119 0.881 22 C -0.024 4.024 23 O -0.315 6.315 24 C -0.026 4.026 25 C -0.147 4.147 26 H 0.130 0.870 27 C -0.022 4.022 28 C -0.200 4.200 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.144 0.856 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 29.374 -10.090 -2.666 31.173 hybrid contribution -1.135 0.776 -0.268 1.401 sum 28.239 -9.314 -2.934 29.880 Atomic orbital electron populations 1.69727 1.06859 1.29597 1.50300 1.25288 0.95921 1.02157 0.95549 0.85219 0.78899 0.77428 0.79151 1.19462 1.18776 1.18573 1.20716 0.78133 0.96148 1.52641 0.90262 1.83503 1.21230 1.27385 1.83329 1.19587 0.93070 0.85188 0.95141 1.21336 1.00204 0.93442 1.10967 1.21119 0.95444 0.96315 0.96670 1.21009 0.93277 0.98423 1.06164 1.19218 0.95263 0.91684 0.96866 1.20670 0.91375 1.07998 0.92169 1.20702 0.80533 0.75029 0.91754 1.90773 1.49650 1.51046 1.54423 1.48649 1.05186 1.72961 1.08739 1.22125 0.94078 1.01002 0.84460 1.23385 0.93974 1.00953 0.96496 0.88099 1.23634 0.84920 0.99259 0.94603 1.89126 1.29882 1.94910 1.17631 1.23744 0.94773 0.99134 0.84988 1.23418 0.95389 1.01219 0.94662 0.86957 1.22469 0.83395 1.02111 0.94244 1.20259 0.90650 0.98915 1.10206 0.90548 0.87460 0.84111 0.83396 0.83937 0.85587 0.92338 0.90151 0.88036 0.90919 0.90442 0.87234 0.87840 0.88560 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.81 13.96 21.61 0.30 -56.51 16 2 C 0.01 0.54 5.49 84.83 0.47 1.00 16 3 Si 0.97 47.02 28.62 68.60 1.96 48.98 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.40 -24.63 9.95 67.92 0.68 -23.95 16 8 H 0.08 5.11 5.44 -2.91 -0.02 5.10 16 9 O -0.25 -14.12 8.59 -22.77 -0.20 -14.31 16 10 C 0.12 5.94 6.65 22.58 0.15 6.09 16 11 C -0.24 -11.27 9.17 22.39 0.21 -11.07 16 12 C -0.08 -2.85 10.04 22.25 0.22 -2.63 16 13 C -0.17 -5.39 9.70 22.30 0.22 -5.17 16 14 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 15 C -0.08 -1.71 4.81 29.10 0.14 -1.57 16 16 C 0.53 13.60 7.87 87.66 0.69 14.29 16 17 O -0.58 -21.94 16.26 -3.05 -0.05 -21.99 16 18 N -0.62 -10.92 3.32 -815.66 -2.71 -13.62 16 19 C 0.11 1.73 6.55 86.49 0.57 2.29 16 20 C -0.13 -1.46 4.19 -9.18 -0.04 -1.50 16 21 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 22 C 0.05 0.54 7.17 72.46 0.52 1.06 16 23 O -0.40 -5.34 11.65 -148.98 -1.74 -7.08 16 24 C 0.05 0.37 7.17 72.46 0.52 0.88 16 25 C -0.13 -1.03 4.20 -9.22 -0.04 -1.07 16 26 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 27 C 0.10 0.82 6.37 86.45 0.55 1.37 16 28 C -0.18 -7.43 9.64 22.39 0.22 -7.22 16 29 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 30 H 0.11 5.48 5.64 -2.91 -0.02 5.47 16 31 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.14 1.76 8.08 -2.39 -0.02 1.74 16 34 H 0.13 1.99 7.80 -2.39 -0.02 1.97 16 35 H 0.06 1.26 7.92 -2.39 -0.02 1.24 16 36 H 0.08 1.14 7.08 -2.39 -0.02 1.12 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.64 7.13 -2.39 -0.02 0.63 16 39 H 0.08 0.38 7.14 -2.39 -0.02 0.37 16 40 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 0.51 7.31 -2.39 -0.02 0.49 16 42 H 0.10 0.44 7.09 -2.38 -0.02 0.43 16 43 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -81.89 352.72 3.58 -78.31 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.03 Total: 14.46 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 4.97 Total: -28.24 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -2.41 Total: -70.13 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.98 Total: -43.38 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.96 Total: 48.98 kcal Total: -81.89 3.58 -78.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872315806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.668 kcal (2) G-P(sol) polarization free energy of solvation -81.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds