Wall clock time and date at job start Tue Mar 31 2020 11:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37765 * 120.01145 * 2 1 4 4 C 1.39210 * 120.20035 * 180.02562 * 3 2 1 5 5 S 1.76196 * 131.17759 * 180.02562 * 4 3 2 6 6 C 1.75803 * 90.45349 * 179.97438 * 5 4 3 7 7 N 1.38005 * 124.81530 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99823 * 0.02598 * 7 6 5 9 9 C 1.53239 * 109.33813 * 172.74616 * 8 7 6 10 10 N 1.47079 * 108.52363 * 53.82938 * 9 8 7 11 11 C 1.36936 * 120.88008 * 128.83239 * 10 9 8 12 12 H 1.08004 * 119.99739 * 206.57669 * 11 10 9 13 13 C 1.38808 * 120.00069 * 26.58213 * 11 10 9 14 14 N 1.31622 * 119.99956 * 17.00039 * 13 11 10 15 15 Si 1.86796 * 119.99962 * 197.00330 * 13 11 10 16 16 H 1.48504 * 109.47411 * 60.00105 * 15 13 11 17 17 H 1.48507 * 109.47483 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47472 * 299.99633 * 15 13 11 19 19 C 1.47080 * 118.23484 * 308.81659 * 10 9 8 20 20 C 1.46904 * 111.00141 * 235.72581 * 7 6 5 21 21 N 1.28894 * 110.37572 * 0.24709 * 6 5 4 22 22 C 1.34815 * 117.87459 * 359.54460 * 21 6 5 23 23 C 1.41058 * 128.73663 * 180.22381 * 22 21 6 24 24 C 1.50700 * 119.78380 * 0.25464 * 23 22 21 25 25 C 1.37242 * 120.43272 * 180.23701 * 23 22 21 26 26 H 1.08996 * 109.47466 * 270.00400 * 1 2 3 27 27 H 1.09008 * 109.46855 * 30.00620 * 1 2 3 28 28 H 1.09006 * 109.46980 * 149.99744 * 1 2 3 29 29 H 1.08000 * 119.89484 * 0.02562 * 3 2 1 30 30 H 1.09000 * 109.48989 * 52.78561 * 8 7 6 31 31 H 1.09001 * 109.50932 * 292.72031 * 8 7 6 32 32 H 1.09002 * 109.62608 * 173.54118 * 9 8 7 33 33 H 1.09000 * 109.62835 * 294.11854 * 9 8 7 34 34 H 0.96998 * 119.99784 * 180.02562 * 14 13 11 35 35 H 1.08991 * 109.62858 * 291.47187 * 19 10 9 36 36 H 1.09007 * 109.62132 * 170.89227 * 19 10 9 37 37 H 1.09003 * 109.48678 * 307.20839 * 20 7 6 38 38 H 1.08998 * 109.49489 * 67.29160 * 20 7 6 39 39 H 1.09000 * 109.46906 * 90.00176 * 24 23 22 40 40 H 1.09002 * 109.47080 * 210.00306 * 24 23 22 41 41 H 1.08999 * 109.46915 * 329.99946 * 24 23 22 42 42 H 1.08008 * 119.70238 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1929 0.0000 4 6 3.5881 1.1975 -0.0005 5 16 4.7438 2.5275 -0.0001 6 6 6.0799 1.3850 -0.0006 7 7 7.4151 1.7340 -0.0010 8 6 7.5776 3.1940 -0.0004 9 6 9.0593 3.5396 0.1816 10 7 9.8348 2.8280 -0.8458 11 6 10.7300 3.4954 -1.6384 12 1 10.9673 3.1170 -2.6218 13 6 11.3326 4.6580 -1.1780 14 7 11.3173 4.9428 0.1070 15 14 12.1650 5.8185 -2.3820 16 1 11.1705 6.2988 -3.3748 17 1 12.7267 6.9783 -1.6440 18 1 13.2593 5.1014 -3.0847 19 6 9.6234 1.3806 -0.9989 20 6 8.1195 1.1199 -1.1346 21 7 5.6357 0.1750 -0.0062 22 6 4.2998 -0.0060 -0.0011 23 6 3.5729 -1.2149 -0.0011 24 6 4.3080 -2.5304 -0.0017 25 6 2.2005 -1.2008 -0.0002 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6545 2.1274 0.0004 30 1 7.0005 3.6237 0.8184 31 1 7.2230 3.6001 -0.9478 32 1 9.2012 4.6144 0.0685 33 1 9.3894 3.2262 1.1720 34 1 11.7381 5.7554 0.4286 35 1 10.0076 0.8596 -0.1221 36 1 10.1382 1.0280 -1.8927 37 1 7.9354 0.0456 -1.1382 38 1 7.7575 1.5546 -2.0663 39 1 4.4856 -2.8478 1.0258 40 1 3.7081 -3.2816 -0.5155 41 1 5.2619 -2.4133 -0.5159 42 1 1.6558 -2.1334 0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881898758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:47 Heat of formation + Delta-G solvation = 83.527732 kcal Electronic energy + Delta-G solvation = -23753.853503 eV Core-core repulsion = 20439.768345 eV Total energy + Delta-G solvation = -3314.085158 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38600 -38.92969 -36.74582 -34.47584 -33.24680 -31.61546 -30.85343 -30.15257 -27.50831 -27.20348 -25.76568 -23.97201 -23.13730 -23.03349 -21.13702 -20.31148 -19.48564 -18.00702 -17.13033 -16.44136 -16.02011 -15.18011 -15.08852 -14.81265 -14.42789 -14.26866 -14.10598 -13.64311 -13.56670 -13.42065 -13.30160 -13.12655 -12.75375 -12.61557 -12.44638 -12.14580 -11.75282 -11.57025 -11.34830 -11.21122 -10.88137 -10.78072 -10.75531 -10.54481 -10.31821 -9.96654 -9.93425 -9.82813 -9.62093 -9.10158 -8.58839 -8.06260 -7.66892 -6.84831 -5.90009 -3.32312 0.53743 1.10569 1.26519 1.78010 2.39361 3.33254 3.39710 3.39991 3.44931 3.64357 4.40873 4.50137 4.60116 4.67641 4.99798 5.09875 5.18592 5.25875 5.30553 5.35227 5.37055 5.48895 5.56013 5.61855 5.64401 5.68302 5.73706 5.80571 5.87622 5.97129 6.02865 6.17785 6.21819 6.28684 6.40450 6.40786 6.65875 6.72985 6.88638 7.07470 7.21620 7.44483 7.68922 7.90259 8.29459 9.07282 9.69757 10.26899 11.19580 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.003024 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.889914 B = 9256.440673 C = 9823.262875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.086 4.086 3 C -0.072 4.072 4 C -0.179 4.179 5 S 0.015 5.985 6 C 0.325 3.675 7 N -0.430 5.430 8 C 0.022 3.978 9 C 0.180 3.820 10 N -0.595 5.595 11 C -0.258 4.258 12 H 0.069 0.931 13 C 0.004 3.996 14 N -0.903 5.903 15 Si 0.905 3.095 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.282 1.282 19 C 0.146 3.854 20 C 0.051 3.949 21 N -0.506 5.506 22 C 0.112 3.888 23 C -0.043 4.043 24 C -0.108 4.108 25 C -0.108 4.108 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.035 0.965 34 H 0.257 0.743 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.380 -9.554 -0.023 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.090 4.090 3 C -0.095 4.095 4 C -0.298 4.298 5 S 0.266 5.734 6 C -0.051 4.051 7 N -0.149 5.149 8 C -0.107 4.107 9 C 0.054 3.946 10 N -0.318 5.318 11 C -0.387 4.387 12 H 0.087 0.913 13 C -0.195 4.195 14 N -0.547 5.547 15 Si 0.735 3.265 16 H -0.210 1.210 17 H -0.215 1.215 18 H -0.208 1.208 19 C 0.019 3.981 20 C -0.077 4.077 21 N -0.226 5.226 22 C -0.009 4.009 23 C -0.046 4.046 24 C -0.165 4.165 25 C -0.129 4.129 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.142 0.858 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.569 -8.858 0.464 20.579 hybrid contribution -0.259 0.273 -0.929 1.003 sum -18.828 -8.585 -0.465 20.698 Atomic orbital electron populations 1.20734 0.90606 1.02814 1.02354 1.19695 0.95990 0.92370 1.00906 1.20082 0.90146 0.98156 1.01136 1.23480 0.98705 0.96032 1.11617 1.85256 0.99399 1.10463 1.78297 1.26094 0.93601 0.89651 0.95785 1.58199 1.02028 1.13205 1.41441 1.23403 1.04299 0.81865 1.01117 1.20915 0.82540 0.99339 0.91838 1.44153 1.45210 1.01410 1.41020 1.19152 1.17894 1.06210 0.95416 0.91326 1.25052 0.98276 1.00610 0.95546 1.69996 1.46981 1.26094 1.11627 0.86326 0.79288 0.80520 0.80376 1.20960 1.21531 1.20774 1.21070 0.90081 0.87105 0.99817 1.22952 0.97265 0.99022 0.88439 1.66297 1.12593 1.19820 1.23913 1.18779 0.86617 0.93126 1.02369 1.19437 0.92711 0.92938 0.99496 1.20706 1.00637 0.92614 1.02520 1.20629 0.92579 0.97799 1.01920 0.91113 0.91538 0.91394 0.85772 0.90580 0.92774 0.88131 0.94731 0.93321 0.94918 0.91383 0.89701 0.93432 0.91086 0.91696 0.90610 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.09 -0.90 5.88 -104.64 -0.62 -1.51 16 3 C -0.07 -0.88 9.71 -39.39 -0.38 -1.27 16 4 C -0.18 -2.69 6.52 -38.63 -0.25 -2.94 16 5 S 0.01 0.23 21.37 -107.50 -2.30 -2.07 16 6 C 0.32 5.76 6.92 -88.91 -0.61 5.15 16 7 N -0.43 -8.07 4.68 -173.96 -0.81 -8.88 16 8 C 0.02 0.41 4.66 -3.70 -0.02 0.39 16 9 C 0.18 4.14 5.42 -3.60 -0.02 4.12 16 10 N -0.59 -14.42 3.04 -172.02 -0.52 -14.94 16 11 C -0.26 -6.80 9.63 -15.06 -0.15 -6.94 16 12 H 0.07 1.77 7.88 -52.48 -0.41 1.35 16 13 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 14 N -0.90 -25.28 11.15 55.49 0.62 -24.66 16 15 Si 0.91 21.02 29.59 -169.99 -5.03 15.99 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 C 0.15 3.00 6.69 -3.60 -0.02 2.97 16 20 C 0.05 0.94 5.53 -3.70 -0.02 0.92 16 21 N -0.51 -8.94 9.85 -11.16 -0.11 -9.05 16 22 C 0.11 1.79 6.71 -84.89 -0.57 1.22 16 23 C -0.04 -0.56 5.93 -103.92 -0.62 -1.17 16 24 C -0.11 -1.18 9.94 36.01 0.36 -0.82 16 25 C -0.11 -1.16 9.28 -39.78 -0.37 -1.52 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.42 8.08 -51.92 -0.42 0.00 16 28 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.08 1.33 7.38 -51.93 -0.38 0.94 16 31 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.10 2.53 6.12 -51.93 -0.32 2.21 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.31 7.95 -51.92 -0.41 0.90 16 37 H 0.08 1.45 7.75 -51.93 -0.40 1.05 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 41 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 42 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -29.47 351.21 -11.99 -41.46 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.11 Total: -1.35 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.01 Total: -1.79 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.83 Total: -57.53 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.30 Total: -2.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.47 -11.99 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881898758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.985 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds