Wall clock time and date at job start Tue Mar 31 2020 11:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37765 * 120.01145 * 2 1 4 4 C 1.39210 * 120.20035 * 180.02562 * 3 2 1 5 5 S 1.76196 * 131.17759 * 180.02562 * 4 3 2 6 6 C 1.75803 * 90.45349 * 179.97438 * 5 4 3 7 7 N 1.38005 * 124.81530 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99823 * 0.02598 * 7 6 5 9 9 C 1.53239 * 109.33813 * 172.74616 * 8 7 6 10 10 N 1.47079 * 108.52363 * 53.82938 * 9 8 7 11 11 C 1.36936 * 120.88008 * 128.83239 * 10 9 8 12 12 H 1.08004 * 119.99739 * 206.57669 * 11 10 9 13 13 C 1.38808 * 120.00069 * 26.58213 * 11 10 9 14 14 N 1.31622 * 119.99956 * 17.00039 * 13 11 10 15 15 Si 1.86796 * 119.99962 * 197.00330 * 13 11 10 16 16 H 1.48504 * 109.47411 * 60.00105 * 15 13 11 17 17 H 1.48507 * 109.47483 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47472 * 299.99633 * 15 13 11 19 19 C 1.47080 * 118.23484 * 308.81659 * 10 9 8 20 20 C 1.46904 * 111.00141 * 235.72581 * 7 6 5 21 21 N 1.28894 * 110.37572 * 0.24709 * 6 5 4 22 22 C 1.34815 * 117.87459 * 359.54460 * 21 6 5 23 23 C 1.41058 * 128.73663 * 180.22381 * 22 21 6 24 24 C 1.50700 * 119.78380 * 0.25464 * 23 22 21 25 25 C 1.37242 * 120.43272 * 180.23701 * 23 22 21 26 26 H 1.08996 * 109.47466 * 270.00400 * 1 2 3 27 27 H 1.09008 * 109.46855 * 30.00620 * 1 2 3 28 28 H 1.09006 * 109.46980 * 149.99744 * 1 2 3 29 29 H 1.08000 * 119.89484 * 0.02562 * 3 2 1 30 30 H 1.09000 * 109.48989 * 52.78561 * 8 7 6 31 31 H 1.09001 * 109.50932 * 292.72031 * 8 7 6 32 32 H 1.09002 * 109.62608 * 173.54118 * 9 8 7 33 33 H 1.09000 * 109.62835 * 294.11854 * 9 8 7 34 34 H 0.96998 * 119.99784 * 180.02562 * 14 13 11 35 35 H 1.08991 * 109.62858 * 291.47187 * 19 10 9 36 36 H 1.09007 * 109.62132 * 170.89227 * 19 10 9 37 37 H 1.09003 * 109.48678 * 307.20839 * 20 7 6 38 38 H 1.08998 * 109.49489 * 67.29160 * 20 7 6 39 39 H 1.09000 * 109.46906 * 90.00176 * 24 23 22 40 40 H 1.09002 * 109.47080 * 210.00306 * 24 23 22 41 41 H 1.08999 * 109.46915 * 329.99946 * 24 23 22 42 42 H 1.08008 * 119.70238 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1929 0.0000 4 6 3.5881 1.1975 -0.0005 5 16 4.7438 2.5275 -0.0001 6 6 6.0799 1.3850 -0.0006 7 7 7.4151 1.7340 -0.0010 8 6 7.5776 3.1940 -0.0004 9 6 9.0593 3.5396 0.1816 10 7 9.8348 2.8280 -0.8458 11 6 10.7300 3.4954 -1.6384 12 1 10.9673 3.1170 -2.6218 13 6 11.3326 4.6580 -1.1780 14 7 11.3173 4.9428 0.1070 15 14 12.1650 5.8185 -2.3820 16 1 11.1705 6.2988 -3.3748 17 1 12.7267 6.9783 -1.6440 18 1 13.2593 5.1014 -3.0847 19 6 9.6234 1.3806 -0.9989 20 6 8.1195 1.1199 -1.1346 21 7 5.6357 0.1750 -0.0062 22 6 4.2998 -0.0060 -0.0011 23 6 3.5729 -1.2149 -0.0011 24 6 4.3080 -2.5304 -0.0017 25 6 2.2005 -1.2008 -0.0002 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6545 2.1274 0.0004 30 1 7.0005 3.6237 0.8184 31 1 7.2230 3.6001 -0.9478 32 1 9.2012 4.6144 0.0685 33 1 9.3894 3.2262 1.1720 34 1 11.7381 5.7554 0.4286 35 1 10.0076 0.8596 -0.1221 36 1 10.1382 1.0280 -1.8927 37 1 7.9354 0.0456 -1.1382 38 1 7.7575 1.5546 -2.0663 39 1 4.4856 -2.8478 1.0258 40 1 3.7081 -3.2816 -0.5155 41 1 5.2619 -2.4133 -0.5159 42 1 1.6558 -2.1334 0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881898758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:46 Heat of formation + Delta-G solvation = 67.729733 kcal Electronic energy + Delta-G solvation = -23754.538555 eV Core-core repulsion = 20439.768345 eV Total energy + Delta-G solvation = -3314.770211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50532 -40.31424 -38.00737 -36.11205 -34.17319 -33.37945 -32.10554 -31.65868 -28.96016 -28.14644 -26.96001 -25.42101 -24.67750 -24.49441 -22.30550 -21.37096 -21.14880 -19.32234 -18.68630 -17.90701 -17.07240 -16.75384 -16.45768 -16.25817 -15.63841 -15.53328 -15.45395 -15.26297 -15.09417 -14.71542 -14.36175 -14.08203 -13.86148 -13.56448 -13.41225 -13.28979 -13.17747 -12.88169 -12.64515 -12.55822 -12.40406 -12.31289 -12.26709 -12.12471 -11.91463 -11.77703 -11.65412 -10.91289 -10.88418 -10.62776 -10.30540 -9.18406 -8.84951 -8.76987 -7.92574 -5.37802 -0.58283 0.05353 0.15492 0.61173 1.27622 1.48597 1.50580 1.57428 2.11448 2.49423 2.63371 3.24157 3.36532 3.50953 3.65025 3.85409 4.01040 4.01419 4.16286 4.23981 4.25859 4.28902 4.40899 4.45397 4.58909 4.61880 4.65021 4.78831 4.80324 4.89442 4.92299 4.99220 5.06647 5.14912 5.19218 5.32795 5.37904 5.46319 5.52332 5.53404 5.63418 5.71880 5.86791 6.30996 6.67027 7.06719 7.74195 8.29064 9.15611 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.003024 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.889914 B = 9256.440673 C = 9823.262875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.069 4.069 3 C -0.088 4.088 4 C -0.188 4.188 5 S 0.021 5.979 6 C 0.296 3.704 7 N -0.444 5.444 8 C 0.042 3.958 9 C 0.190 3.810 10 N -0.612 5.612 11 C -0.268 4.268 12 H 0.073 0.927 13 C -0.047 4.047 14 N -0.934 5.934 15 Si 0.970 3.030 16 H -0.278 1.278 17 H -0.294 1.294 18 H -0.275 1.275 19 C 0.147 3.853 20 C 0.066 3.934 21 N -0.513 5.513 22 C 0.069 3.931 23 C -0.052 4.052 24 C -0.105 4.105 25 C -0.103 4.103 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.009 0.991 34 H 0.253 0.747 35 H 0.024 0.976 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.688 -11.024 -0.845 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.072 4.072 3 C -0.111 4.111 4 C -0.307 4.307 5 S 0.272 5.728 6 C -0.079 4.079 7 N -0.163 5.163 8 C -0.087 4.087 9 C 0.063 3.937 10 N -0.336 5.336 11 C -0.397 4.397 12 H 0.091 0.909 13 C -0.242 4.242 14 N -0.580 5.580 15 Si 0.798 3.202 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.201 1.201 19 C 0.021 3.979 20 C -0.062 4.062 21 N -0.233 5.233 22 C -0.051 4.051 23 C -0.055 4.055 24 C -0.162 4.162 25 C -0.123 4.123 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.160 0.840 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.910 -10.368 -0.367 24.242 hybrid contribution 0.516 0.558 -0.654 1.002 sum -21.395 -9.810 -1.021 23.559 Atomic orbital electron populations 1.20852 0.87558 1.04352 1.03687 1.20228 0.98041 0.91503 0.97452 1.20449 0.89094 0.99969 1.01611 1.23722 0.99747 0.95173 1.12040 1.85049 0.98911 1.10437 1.78399 1.25846 0.93391 0.90493 0.98206 1.58125 1.03505 1.12515 1.42188 1.23023 1.01311 0.82789 1.01558 1.20619 0.84969 0.97717 0.90380 1.44401 1.45264 1.03002 1.40909 1.19496 1.17811 1.06562 0.95851 0.90941 1.25800 0.99395 1.02064 0.96961 1.70152 1.48230 1.26324 1.13272 0.85307 0.78376 0.78256 0.78276 1.20351 1.22000 1.20111 1.21143 0.91928 0.85047 0.99797 1.22717 0.95407 0.99602 0.88476 1.66233 1.14120 1.20106 1.22804 1.19163 0.86114 0.94685 1.05103 1.19850 0.93876 0.92698 0.99064 1.20724 1.00033 0.92519 1.02905 1.21105 0.91684 0.99552 0.99964 0.89657 0.90601 0.89391 0.84003 0.89223 0.92899 0.90638 0.97319 0.93801 0.95823 0.90365 0.88569 0.93713 0.90671 0.88669 0.92678 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 71.24 0.71 -0.25 16 2 C -0.07 -1.17 5.88 -19.87 -0.12 -1.28 16 3 C -0.09 -1.94 9.71 22.39 0.22 -1.72 16 4 C -0.19 -5.46 6.52 22.89 0.15 -5.31 16 5 S 0.02 0.66 21.37 -56.49 -1.21 -0.54 16 6 C 0.30 10.68 6.92 179.75 1.24 11.92 16 7 N -0.44 -17.08 4.68 -704.30 -3.30 -20.38 16 8 C 0.04 1.64 4.66 86.38 0.40 2.05 16 9 C 0.19 9.14 5.42 86.35 0.47 9.61 16 10 N -0.61 -30.62 3.04 -698.14 -2.12 -32.74 16 11 C -0.27 -14.40 9.63 84.03 0.81 -13.60 16 12 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 13 C -0.05 -2.54 4.94 84.86 0.42 -2.12 16 14 N -0.93 -54.11 11.15 21.65 0.24 -53.87 16 15 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 C 0.15 6.17 6.69 86.35 0.58 6.75 16 20 C 0.07 2.46 5.53 86.38 0.48 2.94 16 21 N -0.51 -18.25 9.85 -189.23 -1.86 -20.11 16 22 C 0.07 2.14 6.71 39.76 0.27 2.41 16 23 C -0.05 -1.24 5.93 -19.41 -0.12 -1.35 16 24 C -0.11 -2.09 9.94 71.24 0.71 -1.38 16 25 C -0.10 -1.78 9.28 22.14 0.21 -1.58 16 26 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.08 0.59 8.08 -2.38 -0.02 0.58 16 28 H 0.09 0.50 8.09 -2.38 -0.02 0.48 16 29 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.09 3.23 7.38 -2.39 -0.02 3.21 16 31 H 0.05 2.07 8.07 -2.39 -0.02 2.05 16 32 H 0.08 4.00 6.12 -2.39 -0.01 3.99 16 33 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 3.06 7.95 -2.38 -0.02 3.04 16 37 H 0.10 3.33 7.75 -2.39 -0.02 3.31 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 41 H 0.05 1.32 7.91 -2.39 -0.02 1.31 16 42 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -65.80 351.21 1.23 -64.58 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.02 Total: 10.06 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.43 Total: 7.09 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -7.04 Total: -127.10 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -1.21 Total: -0.54 kcal Total: -65.80 1.23 -64.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881898758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.305 kcal (2) G-P(sol) polarization free energy of solvation -65.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds