Wall clock time and date at job start Tue Mar 31 2020 11:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86806 * 120.00023 * 2 1 4 4 H 1.48493 * 109.47119 * 269.99752 * 3 2 1 5 5 H 1.48496 * 109.46949 * 29.99890 * 3 2 1 6 6 H 1.48501 * 109.46886 * 149.99847 * 3 2 1 7 7 C 1.38654 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00425 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00135 * 185.03550 * 9 7 2 11 11 C 1.38943 * 120.03480 * 174.66111 * 10 9 7 12 12 C 1.38120 * 120.07372 * 180.02562 * 11 10 9 13 13 C 1.38202 * 120.14057 * 0.02562 * 12 11 10 14 14 C 1.38923 * 120.06397 * 359.97438 * 13 12 11 15 15 N 1.39922 * 120.03836 * 179.97438 * 14 13 12 16 16 C 1.34780 * 119.99977 * 35.11164 * 15 14 13 17 17 O 1.21293 * 119.99514 * 355.48807 * 16 15 14 18 18 C 1.50699 * 120.00217 * 175.48660 * 16 15 14 19 19 H 1.09002 * 110.38583 * 305.95527 * 18 16 15 20 20 O 1.44627 * 110.43403 * 183.54883 * 18 16 15 21 21 C 1.44633 * 104.50655 * 198.49607 * 20 18 16 22 22 C 1.54561 * 104.47570 * 42.75129 * 21 20 18 23 23 H 1.09004 * 112.33542 * 212.44722 * 22 21 20 24 24 C 1.54118 * 108.75535 * 87.53889 * 22 21 20 25 25 C 1.54827 * 104.37451 * 225.08702 * 24 22 21 26 26 C 1.54828 * 102.72805 * 38.27317 * 25 24 22 27 27 C 1.54130 * 104.37224 * 321.72417 * 26 25 24 28 28 H 1.08998 * 112.70936 * 260.17346 * 27 26 25 29 29 C 1.38730 * 120.03006 * 354.69118 * 10 9 7 30 30 H 0.96995 * 120.00283 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.96682 * 0.02562 * 11 10 9 32 32 H 1.08008 * 119.93692 * 179.97438 * 12 11 10 33 33 H 1.07994 * 119.97260 * 179.72216 * 13 12 11 34 34 H 0.97003 * 120.00297 * 215.11279 * 15 14 13 35 35 H 1.08998 * 110.43516 * 161.50145 * 21 20 18 36 36 H 1.09001 * 110.42788 * 284.00624 * 21 20 18 37 37 H 1.08997 * 110.45582 * 343.81216 * 24 22 21 38 38 H 1.09003 * 110.45511 * 106.23985 * 24 22 21 39 39 H 1.08995 * 110.76414 * 156.58260 * 25 24 22 40 40 H 1.08999 * 110.76122 * 279.96937 * 25 24 22 41 41 H 1.08990 * 110.45617 * 80.44885 * 26 25 24 42 42 H 1.09004 * 110.45444 * 202.88378 * 26 25 24 43 43 H 1.07994 * 120.07380 * 359.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5046 0.1072 11 6 1.4355 -4.7351 0.2254 12 6 2.1828 -5.8915 0.3346 13 6 3.5634 -5.8289 0.3272 14 6 4.2037 -4.6017 0.2093 15 7 5.6015 -4.5388 0.2024 16 6 6.3175 -5.5221 -0.3784 17 8 5.7549 -6.5006 -0.8224 18 6 7.8168 -5.4056 -0.4761 19 1 8.0942 -4.4676 -0.9570 20 8 8.3639 -6.5282 -1.2055 21 6 9.7660 -6.5421 -0.8507 22 6 9.7818 -6.2780 0.6721 23 1 10.6643 -5.7210 0.9868 24 6 9.6468 -7.6243 1.4100 25 6 8.5989 -7.3525 2.5169 26 6 7.5853 -6.4227 1.8062 27 6 8.4583 -5.5064 0.9265 28 1 8.6273 -4.5279 1.3760 29 6 3.4556 -3.4382 0.0990 30 1 -0.4850 0.8400 -0.0004 31 1 0.3568 -4.7874 0.2320 32 1 1.6873 -6.8468 0.4267 33 1 4.1450 -6.7343 0.4172 34 1 6.0554 -3.7877 0.6156 35 1 10.2051 -7.5147 -1.0727 36 1 10.3001 -5.7527 -1.3794 37 1 9.2903 -8.3975 0.7296 38 1 10.6010 -7.9151 1.8494 39 1 8.1187 -8.2795 2.8304 40 1 9.0569 -6.8467 3.3669 41 1 6.9020 -7.0053 1.1885 42 1 7.0297 -5.8352 2.5372 43 1 3.9511 -2.4830 0.0073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888263783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:53 Heat of formation + Delta-G solvation = -99.810952 kcal Electronic energy + Delta-G solvation = -26529.458470 eV Core-core repulsion = 22732.377528 eV Total energy + Delta-G solvation = -3797.080942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.23765 -40.98161 -39.96064 -38.05992 -36.70810 -35.69574 -34.23891 -32.33094 -30.91793 -30.58341 -29.99792 -27.50526 -27.11164 -24.88692 -23.53340 -23.26771 -22.14835 -21.23726 -20.69684 -19.73080 -19.38682 -18.16833 -17.98156 -17.27616 -16.84641 -16.53226 -16.26673 -15.96627 -15.86782 -15.73658 -15.50236 -15.36070 -15.28928 -14.61139 -14.60435 -14.11571 -13.84722 -13.54453 -13.19448 -12.81954 -12.70087 -12.58563 -12.44584 -12.39439 -12.18378 -12.10240 -12.06740 -11.82040 -11.76306 -11.52887 -11.43550 -11.24827 -10.88527 -10.74276 -10.56971 -9.38142 -8.91623 -8.45615 -6.14847 0.36643 0.67839 1.37164 1.44006 1.48450 1.54992 1.78145 2.18965 2.82635 3.01603 3.15218 3.20338 3.39854 3.48604 3.66567 3.78694 4.08312 4.11096 4.14900 4.30282 4.31928 4.38674 4.42689 4.49699 4.54344 4.61575 4.64453 4.69829 4.70662 4.84451 4.86300 5.00190 5.00669 5.11719 5.14650 5.21934 5.22074 5.36448 5.44487 5.45336 5.64340 5.65917 5.72457 6.01931 6.15460 6.40293 6.98482 7.05398 7.77643 8.77449 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.003161 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.797387 B = 8855.893924 C = 9674.538959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.414 4.414 8 H 0.106 0.894 9 O -0.226 6.226 10 C 0.135 3.865 11 C -0.212 4.212 12 C -0.054 4.054 13 C -0.201 4.201 14 C 0.187 3.813 15 N -0.654 5.654 16 C 0.522 3.478 17 O -0.547 6.547 18 C 0.061 3.939 19 H 0.122 0.878 20 O -0.378 6.378 21 C 0.037 3.963 22 C -0.112 4.112 23 H 0.128 0.872 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.135 4.135 27 C -0.107 4.107 28 H 0.133 0.867 29 C -0.257 4.257 30 H 0.273 0.727 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.424 0.576 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.798 -9.298 4.848 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.490 4.490 8 H 0.123 0.877 9 O -0.132 6.132 10 C 0.084 3.916 11 C -0.232 4.232 12 C -0.073 4.073 13 C -0.221 4.221 14 C 0.093 3.907 15 N -0.301 5.301 16 C 0.311 3.689 17 O -0.423 6.423 18 C 0.001 3.999 19 H 0.139 0.861 20 O -0.297 6.297 21 C -0.039 4.039 22 C -0.131 4.131 23 H 0.146 0.854 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.172 4.172 27 C -0.126 4.126 28 H 0.151 0.849 29 C -0.278 4.278 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.169 0.831 33 H 0.146 0.854 34 H 0.263 0.737 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 23.956 -9.992 4.331 26.315 hybrid contribution -0.247 1.057 -0.025 1.086 sum 23.708 -8.935 4.306 25.699 Atomic orbital electron populations 1.70188 1.08149 1.28851 1.48707 1.26617 0.96818 1.02809 0.95759 0.84584 0.78034 0.74424 0.79162 1.19064 1.19835 1.16997 1.21849 0.92634 0.81261 1.53297 0.87716 1.83983 1.35628 1.12487 1.81125 1.19563 0.90741 0.87992 0.93333 1.20482 1.00236 0.90376 1.12064 1.20923 0.93080 0.97464 0.95823 1.20950 0.94670 0.96811 1.09688 1.17405 0.82602 0.93271 0.97462 1.43264 1.03852 1.25925 1.57077 1.20861 0.90086 0.81898 0.76099 1.90713 1.72651 1.31507 1.47473 1.23110 0.88328 0.93021 0.95486 0.86060 1.89391 1.23710 1.48822 1.67738 1.23917 0.81428 1.03863 0.94720 1.23271 0.97911 0.96831 0.95057 0.85358 1.22429 0.99800 0.96206 0.97120 1.22459 0.95966 0.98962 0.98220 1.22551 0.97982 0.98011 0.98671 1.23323 0.95004 1.01855 0.92396 0.84877 1.20846 0.93157 0.98529 1.15276 0.91841 0.86278 0.83097 0.85355 0.73723 0.87899 0.89938 0.92888 0.89349 0.92217 0.89556 0.93864 0.91123 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.90 13.67 21.61 0.30 -55.60 16 2 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 3 Si 1.02 41.33 29.55 68.60 2.03 43.36 16 4 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 7 C -0.41 -23.49 9.49 67.92 0.64 -22.85 16 8 H 0.11 5.33 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.44 9.76 -22.80 -0.22 -13.66 16 10 C 0.14 6.74 6.65 22.56 0.15 6.89 16 11 C -0.21 -9.33 9.99 22.41 0.22 -9.10 16 12 C -0.05 -2.04 10.03 22.23 0.22 -1.81 16 13 C -0.20 -7.62 8.69 22.43 0.19 -7.42 16 14 C 0.19 6.98 6.29 38.14 0.24 7.22 16 15 N -0.65 -18.41 5.33 -303.54 -1.62 -20.03 16 16 C 0.52 15.29 4.89 87.66 0.43 15.71 16 17 O -0.55 -21.18 13.51 15.21 0.21 -20.97 16 18 C 0.06 1.25 3.48 30.38 0.11 1.36 16 19 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 20 O -0.38 -9.28 10.96 -130.69 -1.43 -10.71 16 21 C 0.04 0.51 6.85 72.51 0.50 1.00 16 22 C -0.11 -1.19 4.04 -9.10 -0.04 -1.23 16 23 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 24 C -0.12 -1.47 6.26 31.60 0.20 -1.27 16 25 C -0.12 -1.71 6.90 31.84 0.22 -1.49 16 26 C -0.13 -2.51 5.54 31.60 0.18 -2.34 16 27 C -0.11 -1.48 3.90 -9.09 -0.04 -1.52 16 28 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 29 C -0.26 -11.06 9.08 22.51 0.20 -10.86 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 32 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.13 4.84 6.23 -2.91 -0.02 4.82 16 34 H 0.42 8.68 8.82 -92.71 -0.82 7.86 16 35 H 0.10 1.27 7.74 -2.39 -0.02 1.25 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.05 0.88 7.57 -2.39 -0.02 0.86 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.04 1.15 6.02 -2.39 -0.01 1.14 16 42 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.13 5.53 5.63 -2.91 -0.02 5.52 16 Total: -1.00 -78.74 348.49 3.38 -75.36 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.23 Total: 30.74 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 3.90 Total: -28.48 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -1.32 Total: -75.63 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.45 Total: -45.35 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -78.74 3.38 -75.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888263783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.455 kcal (2) G-P(sol) polarization free energy of solvation -78.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds