Wall clock time and date at job start Tue Mar 31 2020 10:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86802 * 120.00546 * 2 1 4 4 H 1.48497 * 109.47242 * 272.36359 * 3 2 1 5 5 H 1.48504 * 109.46873 * 32.35805 * 3 2 1 6 6 H 1.48498 * 109.47297 * 152.35934 * 3 2 1 7 7 C 1.39940 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00524 * 345.68026 * 7 2 1 9 9 C 1.41442 * 119.99791 * 165.67727 * 7 2 1 10 10 C 1.40780 * 120.17904 * 330.07042 * 9 7 2 11 11 C 1.37709 * 120.04152 * 180.02562 * 10 9 7 12 12 C 1.38365 * 120.41177 * 0.02562 * 11 10 9 13 13 C 1.39879 * 120.35983 * 359.71902 * 12 11 10 14 14 C 1.47884 * 120.02904 * 180.30021 * 13 12 11 15 15 O 1.21549 * 120.00118 * 19.19211 * 14 13 12 16 16 N 1.34772 * 120.00313 * 199.18935 * 14 13 12 17 17 C 1.47430 * 125.64662 * 6.47200 * 16 14 13 18 18 C 1.54906 * 104.83331 * 155.83703 * 17 16 14 19 19 C 1.55157 * 101.58634 * 37.00527 * 18 17 16 20 20 C 1.47027 * 125.65079 * 186.16118 * 16 14 13 21 21 H 1.08995 * 109.88001 * 300.51283 * 20 16 14 22 22 C 1.53004 * 109.87915 * 61.68092 * 20 16 14 23 23 O 1.43750 * 109.63475 * 57.91207 * 22 20 16 24 24 C 1.44781 * 104.81670 * 215.80968 * 23 22 20 25 25 C 1.54914 * 101.72341 * 36.10013 * 24 23 22 26 26 O 1.43366 * 109.63060 * 298.54630 * 22 20 16 27 27 C 1.39032 * 119.94445 * 0.53844 * 13 12 11 28 28 H 0.97009 * 119.99351 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.97704 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.79169 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.82348 * 180.02562 * 12 11 10 32 32 H 1.09003 * 110.36746 * 274.67270 * 17 16 14 33 33 H 1.08996 * 110.36866 * 36.88364 * 17 16 14 34 34 H 1.08997 * 111.00579 * 155.08236 * 18 17 16 35 35 H 1.09005 * 111.00266 * 278.93353 * 18 17 16 36 36 H 1.09000 * 110.71879 * 82.86026 * 19 18 17 37 37 H 1.08994 * 110.72615 * 206.13798 * 19 18 17 38 38 H 1.09003 * 109.62229 * 178.15176 * 22 20 16 39 39 H 1.09005 * 110.97523 * 277.99304 * 24 23 22 40 40 H 1.08995 * 110.98202 * 154.21563 * 24 23 22 41 41 H 1.09001 * 110.69732 * 206.04658 * 25 24 23 42 42 H 1.08993 * 110.83945 * 82.90676 * 25 24 23 43 43 H 1.08002 * 120.20078 * 179.74493 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4399 2.0752 -1.3988 5 1 1.4657 2.6377 0.7494 6 1 3.5640 1.4261 0.6495 7 6 2.0078 -1.2120 0.0005 8 1 1.4931 -2.1326 0.2323 9 6 3.3893 -1.2311 -0.3025 10 6 3.9362 -0.2697 -1.1733 11 6 5.2815 -0.2913 -1.4668 12 6 6.1043 -1.2549 -0.9109 13 6 5.5798 -2.2151 -0.0393 14 6 6.4670 -3.2376 0.5558 15 8 7.6687 -3.0572 0.5845 16 7 5.9433 -4.3695 1.0666 17 6 4.5293 -4.7778 0.9789 18 6 4.5521 -6.3198 1.1244 19 6 5.6850 -6.5179 2.1658 20 6 6.6884 -5.4047 1.7978 21 1 7.4784 -5.8094 1.1652 22 6 7.2915 -4.8096 3.0718 23 8 6.2457 -4.2577 3.8892 24 6 6.8316 -3.0806 4.4953 25 6 7.7338 -2.5536 3.3516 26 8 8.2091 -3.7633 2.7272 27 6 4.2228 -2.2104 0.2630 28 1 -0.4849 0.8402 0.0004 29 1 3.3003 0.4854 -1.6115 30 1 5.6969 0.4485 -2.1351 31 1 7.1581 -1.2628 -1.1473 32 1 3.9540 -4.3289 1.7886 33 1 4.1111 -4.4922 0.0138 34 1 3.6010 -6.6903 1.5066 35 1 4.8038 -6.7979 0.1776 36 1 5.3061 -6.3811 3.1786 37 1 6.1442 -7.5001 2.0541 38 1 7.8152 -5.5878 3.6271 39 1 7.4256 -3.3466 5.3698 40 1 6.0638 -2.3516 4.7542 41 1 8.5657 -1.9747 3.7527 42 1 7.1561 -1.9570 2.6456 43 1 3.8127 -2.9523 0.9322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888428919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:44 Heat of formation + Delta-G solvation = -80.760302 kcal Electronic energy + Delta-G solvation = -28045.815142 eV Core-core repulsion = 24249.560298 eV Total energy + Delta-G solvation = -3796.254844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76549 -39.15754 -37.56811 -36.76919 -34.75826 -33.62853 -31.97855 -30.96818 -30.53880 -29.66624 -28.31430 -25.27741 -24.72496 -23.46603 -23.07081 -21.68437 -21.27988 -20.28031 -19.08939 -17.52420 -17.26153 -16.57655 -16.52455 -15.97000 -15.80841 -15.20190 -14.94135 -14.63256 -14.20727 -13.97972 -13.63496 -13.43149 -13.15825 -13.04965 -12.79611 -12.68098 -12.56508 -12.41532 -12.21380 -11.96820 -11.57987 -11.54429 -11.28830 -11.18877 -10.97919 -10.75182 -10.56444 -10.47173 -10.12978 -9.92190 -9.68240 -9.49415 -9.37303 -8.98067 -8.17071 -7.85676 -7.71377 -6.99179 -4.56878 1.98056 2.52923 3.05191 3.16559 3.24971 3.34721 3.51281 3.65579 3.92063 4.04972 4.49504 4.57433 4.65853 4.75657 4.89400 4.96091 5.13686 5.25975 5.29797 5.32176 5.42434 5.45438 5.47776 5.64108 5.73610 5.88083 5.92736 5.95134 6.00374 6.02560 6.06209 6.20787 6.28545 6.36448 6.55399 6.63243 6.80046 6.99620 7.18913 7.23268 7.44262 7.53398 7.72286 7.90963 8.01842 8.25762 8.50941 8.71645 8.82708 10.03376 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.004726 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.398200 B = 5922.639489 C = 6250.132117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.447 4.447 8 H 0.092 0.908 9 C 0.083 3.917 10 C -0.219 4.219 11 C -0.088 4.088 12 C -0.183 4.183 13 C -0.102 4.102 14 C 0.572 3.428 15 O -0.524 6.524 16 N -0.606 5.606 17 C 0.100 3.900 18 C -0.134 4.134 19 C -0.124 4.124 20 C 0.128 3.872 21 H 0.088 0.912 22 C 0.220 3.780 23 O -0.370 6.370 24 C 0.017 3.983 25 C 0.028 3.972 26 O -0.353 6.353 27 C -0.185 4.185 28 H 0.285 0.715 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -8.580 6.727 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.475 4.475 8 H 0.110 0.890 9 C 0.080 3.920 10 C -0.239 4.239 11 C -0.106 4.106 12 C -0.203 4.203 13 C -0.105 4.105 14 C 0.364 3.636 15 O -0.400 6.400 16 N -0.342 5.342 17 C -0.022 4.022 18 C -0.172 4.172 19 C -0.162 4.162 20 C 0.023 3.977 21 H 0.105 0.895 22 C 0.124 3.876 23 O -0.290 6.290 24 C -0.060 4.060 25 C -0.049 4.049 26 O -0.273 6.273 27 C -0.204 4.204 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.818 -8.422 6.621 13.875 hybrid contribution 0.120 0.962 0.079 0.972 sum 8.938 -7.460 6.699 13.432 Atomic orbital electron populations 1.69658 1.07951 1.30222 1.35691 1.26115 0.94781 1.01582 0.91033 0.86346 0.80970 0.79873 0.78974 1.19654 1.21945 1.16826 1.19446 0.91599 0.95790 1.40692 0.89019 1.17699 0.93422 0.91004 0.89881 1.21261 0.95164 1.03719 1.03736 1.20568 0.93750 0.97421 0.98899 1.20437 0.98543 0.98145 1.03211 1.19456 0.93616 0.96645 1.00802 1.18476 0.87783 0.80221 0.77125 1.90758 1.14888 1.77653 1.56735 1.48232 1.09347 1.20385 1.56194 1.22684 0.82997 0.93552 1.02986 1.22831 0.99026 0.96077 0.99263 1.22600 0.95881 0.97056 1.00665 1.22032 0.95351 0.88684 0.91637 0.89454 1.24446 0.81942 0.90880 0.90360 1.89202 1.36171 1.41637 1.61993 1.24390 0.97713 0.87693 0.96195 1.24093 0.98306 0.88862 0.93604 1.89048 1.47209 1.17061 1.73984 1.21876 0.91476 1.03422 1.03674 0.90421 0.87919 0.88213 0.87686 0.90614 0.89297 0.89732 0.90755 0.89659 0.90255 0.90024 0.91146 0.87557 0.89016 0.90456 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.97 13.93 55.55 0.77 -20.20 16 2 C 0.08 2.11 5.45 -17.35 -0.09 2.02 16 3 Si 0.91 20.35 24.42 -169.99 -4.15 16.20 16 4 H -0.27 -5.86 6.61 56.52 0.37 -5.49 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.24 -5.63 6.77 56.52 0.38 -5.25 16 7 C -0.45 -11.48 9.60 -37.73 -0.36 -11.85 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.08 2.01 5.14 -106.87 -0.55 1.46 16 10 C -0.22 -5.14 7.07 -38.81 -0.27 -5.42 16 11 C -0.09 -1.90 10.01 -39.73 -0.40 -2.30 16 12 C -0.18 -3.99 9.59 -38.92 -0.37 -4.36 16 13 C -0.10 -2.21 5.75 -105.04 -0.60 -2.82 16 14 C 0.57 11.56 6.03 -12.31 -0.07 11.49 16 15 O -0.52 -11.53 13.17 -18.60 -0.25 -11.78 16 16 N -0.61 -10.20 2.91 -164.10 -0.48 -10.68 16 17 C 0.10 1.49 4.94 -2.53 -0.01 1.48 16 18 C -0.13 -1.48 7.08 -24.58 -0.17 -1.66 16 19 C -0.12 -1.32 6.37 -24.90 -0.16 -1.48 16 20 C 0.13 1.80 3.10 -66.95 -0.21 1.59 16 21 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 22 C 0.22 3.13 3.71 37.16 0.14 3.27 16 23 O -0.37 -5.34 10.36 -59.04 -0.61 -5.96 16 24 C 0.02 0.21 7.95 38.17 0.30 0.51 16 25 C 0.03 0.42 7.25 38.17 0.28 0.69 16 26 O -0.35 -5.97 8.42 -67.54 -0.57 -6.53 16 27 C -0.19 -4.08 7.86 -38.44 -0.30 -4.39 16 28 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 29 H 0.10 2.39 4.36 -52.48 -0.23 2.17 16 30 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.11 2.21 7.76 -52.48 -0.41 1.80 16 32 H 0.08 1.17 6.92 -51.93 -0.36 0.81 16 33 H 0.09 1.43 6.60 -51.93 -0.34 1.09 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.92 7.25 -51.93 -0.38 0.54 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.39 6.58 -51.93 -0.34 1.05 16 43 H 0.12 2.51 4.09 -52.49 -0.21 2.29 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -29.76 333.69 -8.80 -38.56 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.68 Total: 7.11 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -2.87 Total: -11.75 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.30 Total: -30.88 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -1.42 Total: -24.26 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.15 Total: 16.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.76 -8.80 -38.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888428919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.204 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds