Wall clock time and date at job start Tue Mar 31 2020 10:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86802 * 120.00546 * 2 1 4 4 H 1.48497 * 109.47242 * 272.36359 * 3 2 1 5 5 H 1.48504 * 109.46873 * 32.35805 * 3 2 1 6 6 H 1.48498 * 109.47297 * 152.35934 * 3 2 1 7 7 C 1.39940 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00524 * 345.68026 * 7 2 1 9 9 C 1.41442 * 119.99791 * 165.67727 * 7 2 1 10 10 C 1.40780 * 120.17904 * 330.07042 * 9 7 2 11 11 C 1.37709 * 120.04152 * 180.02562 * 10 9 7 12 12 C 1.38365 * 120.41177 * 0.02562 * 11 10 9 13 13 C 1.39879 * 120.35983 * 359.71902 * 12 11 10 14 14 C 1.47884 * 120.02904 * 180.30021 * 13 12 11 15 15 O 1.21549 * 120.00118 * 19.19211 * 14 13 12 16 16 N 1.34772 * 120.00313 * 199.18935 * 14 13 12 17 17 C 1.47430 * 125.64662 * 6.47200 * 16 14 13 18 18 C 1.54906 * 104.83331 * 155.83703 * 17 16 14 19 19 C 1.55157 * 101.58634 * 37.00527 * 18 17 16 20 20 C 1.47027 * 125.65079 * 186.16118 * 16 14 13 21 21 H 1.08995 * 109.88001 * 300.51283 * 20 16 14 22 22 C 1.53004 * 109.87915 * 61.68092 * 20 16 14 23 23 O 1.43750 * 109.63475 * 57.91207 * 22 20 16 24 24 C 1.44781 * 104.81670 * 215.80968 * 23 22 20 25 25 C 1.54914 * 101.72341 * 36.10013 * 24 23 22 26 26 O 1.43366 * 109.63060 * 298.54630 * 22 20 16 27 27 C 1.39032 * 119.94445 * 0.53844 * 13 12 11 28 28 H 0.97009 * 119.99351 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.97704 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.79169 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.82348 * 180.02562 * 12 11 10 32 32 H 1.09003 * 110.36746 * 274.67270 * 17 16 14 33 33 H 1.08996 * 110.36866 * 36.88364 * 17 16 14 34 34 H 1.08997 * 111.00579 * 155.08236 * 18 17 16 35 35 H 1.09005 * 111.00266 * 278.93353 * 18 17 16 36 36 H 1.09000 * 110.71879 * 82.86026 * 19 18 17 37 37 H 1.08994 * 110.72615 * 206.13798 * 19 18 17 38 38 H 1.09003 * 109.62229 * 178.15176 * 22 20 16 39 39 H 1.09005 * 110.97523 * 277.99304 * 24 23 22 40 40 H 1.08995 * 110.98202 * 154.21563 * 24 23 22 41 41 H 1.09001 * 110.69732 * 206.04658 * 25 24 23 42 42 H 1.08993 * 110.83945 * 82.90676 * 25 24 23 43 43 H 1.08002 * 120.20078 * 179.74493 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4399 2.0752 -1.3988 5 1 1.4657 2.6377 0.7494 6 1 3.5640 1.4261 0.6495 7 6 2.0078 -1.2120 0.0005 8 1 1.4931 -2.1326 0.2323 9 6 3.3893 -1.2311 -0.3025 10 6 3.9362 -0.2697 -1.1733 11 6 5.2815 -0.2913 -1.4668 12 6 6.1043 -1.2549 -0.9109 13 6 5.5798 -2.2151 -0.0393 14 6 6.4670 -3.2376 0.5558 15 8 7.6687 -3.0572 0.5845 16 7 5.9433 -4.3695 1.0666 17 6 4.5293 -4.7778 0.9789 18 6 4.5521 -6.3198 1.1244 19 6 5.6850 -6.5179 2.1658 20 6 6.6884 -5.4047 1.7978 21 1 7.4784 -5.8094 1.1652 22 6 7.2915 -4.8096 3.0718 23 8 6.2457 -4.2577 3.8892 24 6 6.8316 -3.0806 4.4953 25 6 7.7338 -2.5536 3.3516 26 8 8.2091 -3.7633 2.7272 27 6 4.2228 -2.2104 0.2630 28 1 -0.4849 0.8402 0.0004 29 1 3.3003 0.4854 -1.6115 30 1 5.6969 0.4485 -2.1351 31 1 7.1581 -1.2628 -1.1473 32 1 3.9540 -4.3289 1.7886 33 1 4.1111 -4.4922 0.0138 34 1 3.6010 -6.6903 1.5066 35 1 4.8038 -6.7979 0.1776 36 1 5.3061 -6.3811 3.1786 37 1 6.1442 -7.5001 2.0541 38 1 7.8152 -5.5878 3.6271 39 1 7.4256 -3.3466 5.3698 40 1 6.0638 -2.3516 4.7542 41 1 8.5657 -1.9747 3.7527 42 1 7.1561 -1.9570 2.6456 43 1 3.8127 -2.9523 0.9322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888428919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:43 Heat of formation + Delta-G solvation = -98.424053 kcal Electronic energy + Delta-G solvation = -28046.581100 eV Core-core repulsion = 24249.560298 eV Total energy + Delta-G solvation = -3797.020802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.98256 -40.55158 -39.12132 -38.23473 -35.90109 -35.50774 -33.35971 -32.38575 -32.05658 -31.20679 -29.45489 -27.11771 -26.01218 -24.83411 -24.18958 -22.95403 -22.84137 -21.73322 -20.56739 -19.15741 -18.38497 -17.95095 -17.73631 -17.63071 -17.24470 -16.61274 -16.38632 -16.13180 -15.60856 -15.43535 -15.01537 -14.71527 -14.69130 -14.32217 -14.20064 -13.99667 -13.94124 -13.81484 -13.62038 -13.35076 -13.25133 -12.85493 -12.71621 -12.55156 -12.32937 -12.23292 -11.99750 -11.72959 -11.66549 -11.39594 -11.20878 -11.15465 -10.67473 -10.62888 -9.64991 -9.62759 -9.41433 -8.89735 -6.52835 0.22994 0.72496 1.24994 1.38622 1.45725 1.97415 2.02053 2.10703 2.47243 2.66898 2.99890 3.43052 3.50116 3.62355 3.69481 3.88349 3.95793 3.99319 4.13625 4.21323 4.25058 4.28763 4.39597 4.41265 4.50749 4.55526 4.61689 4.75622 4.78066 4.87099 4.90171 4.94160 4.97151 4.97240 5.10245 5.15735 5.32816 5.37019 5.53523 5.65274 5.76397 5.84939 6.08586 6.09828 6.31049 6.54964 6.63547 6.78789 7.28348 8.17982 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.004726 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.398200 B = 5922.639489 C = 6250.132117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.051 3.949 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.473 4.473 8 H 0.067 0.933 9 C 0.067 3.933 10 C -0.231 4.231 11 C -0.087 4.087 12 C -0.182 4.182 13 C -0.111 4.111 14 C 0.570 3.430 15 O -0.547 6.547 16 N -0.603 5.603 17 C 0.093 3.907 18 C -0.123 4.123 19 C -0.110 4.110 20 C 0.116 3.884 21 H 0.085 0.915 22 C 0.215 3.785 23 O -0.383 6.383 24 C 0.021 3.979 25 C 0.024 3.976 26 O -0.378 6.378 27 C -0.182 4.182 28 H 0.294 0.706 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.038 0.962 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.833 -9.554 7.530 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.164 4.164 3 Si 0.783 3.217 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.503 4.503 8 H 0.085 0.915 9 C 0.064 3.936 10 C -0.250 4.250 11 C -0.105 4.105 12 C -0.202 4.202 13 C -0.114 4.114 14 C 0.360 3.640 15 O -0.426 6.426 16 N -0.336 5.336 17 C -0.029 4.029 18 C -0.161 4.161 19 C -0.148 4.148 20 C 0.013 3.987 21 H 0.103 0.897 22 C 0.119 3.881 23 O -0.304 6.304 24 C -0.055 4.055 25 C -0.052 4.052 26 O -0.299 6.299 27 C -0.201 4.201 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.057 0.943 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.183 -9.427 7.430 15.741 hybrid contribution -0.185 1.158 -0.175 1.185 sum 9.998 -8.269 7.256 14.866 Atomic orbital electron populations 1.69680 1.08866 1.31362 1.37361 1.26688 0.95331 1.03776 0.90607 0.85616 0.79330 0.77159 0.79585 1.18250 1.20600 1.18103 1.19428 0.92515 0.95422 1.42940 0.91515 1.17851 0.93143 0.92102 0.90500 1.21397 0.96115 1.03691 1.03830 1.20886 0.92938 0.97824 0.98849 1.20725 0.99090 0.97830 1.02530 1.19765 0.93700 0.97272 1.00616 1.18218 0.87218 0.80983 0.77541 1.90737 1.15474 1.78368 1.58002 1.48251 1.10430 1.19815 1.55130 1.22746 0.81794 0.96780 1.01598 1.22822 1.00505 0.92517 1.00220 1.22615 0.94582 0.97188 1.00393 1.22389 0.96062 0.88833 0.91448 0.89716 1.24702 0.81891 0.90896 0.90643 1.89174 1.36789 1.42209 1.62221 1.24515 0.97723 0.87170 0.96074 1.24100 0.99113 0.88448 0.93562 1.89018 1.48083 1.18017 1.74777 1.22019 0.91638 1.03046 1.03444 0.89585 0.87773 0.84890 0.86805 0.91531 0.91129 0.87578 0.89815 0.89332 0.86924 0.86995 0.87940 0.87046 0.87013 0.94314 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.80 13.93 21.82 0.30 -44.50 16 2 C 0.05 2.63 5.45 85.26 0.46 3.09 16 3 Si 0.96 41.82 24.42 68.60 1.67 43.50 16 4 H -0.26 -10.58 6.61 99.48 0.66 -9.92 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.26 -11.61 6.77 99.48 0.67 -10.94 16 7 C -0.47 -25.27 9.60 23.47 0.23 -25.05 16 8 H 0.07 3.76 8.06 -2.91 -0.02 3.74 16 9 C 0.07 3.29 5.14 -21.32 -0.11 3.18 16 10 C -0.23 -10.75 7.07 22.77 0.16 -10.59 16 11 C -0.09 -3.64 10.01 22.17 0.22 -3.42 16 12 C -0.18 -7.79 9.59 22.70 0.22 -7.57 16 13 C -0.11 -4.81 5.75 -20.14 -0.12 -4.93 16 14 C 0.57 23.07 6.03 86.80 0.52 23.60 16 15 O -0.55 -24.13 13.17 19.01 0.25 -23.88 16 16 N -0.60 -19.94 2.91 -791.38 -2.30 -22.24 16 17 C 0.09 2.72 4.94 86.85 0.43 3.15 16 18 C -0.12 -2.41 7.08 31.98 0.23 -2.18 16 19 C -0.11 -1.97 6.37 31.78 0.20 -1.77 16 20 C 0.12 3.06 3.10 45.34 0.14 3.20 16 21 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 22 C 0.21 5.67 3.71 71.98 0.27 5.94 16 23 O -0.38 -10.36 10.36 -126.22 -1.31 -11.67 16 24 C 0.02 0.49 7.95 72.64 0.58 1.07 16 25 C 0.02 0.71 7.25 72.64 0.53 1.23 16 26 O -0.38 -12.41 8.42 -118.09 -0.99 -13.40 16 27 C -0.18 -8.21 7.86 23.01 0.18 -8.03 16 28 H 0.29 14.03 8.30 -92.70 -0.77 13.26 16 29 H 0.10 4.78 4.36 -2.91 -0.01 4.76 16 30 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.11 4.67 7.76 -2.91 -0.02 4.65 16 32 H 0.07 2.08 6.92 -2.39 -0.02 2.06 16 33 H 0.07 2.32 6.60 -2.39 -0.02 2.30 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.09 1.59 7.25 -2.39 -0.02 1.57 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.04 1.42 6.58 -2.39 -0.02 1.40 16 43 H 0.13 5.61 4.09 -2.91 -0.01 5.60 16 Total: -1.00 -65.88 333.69 2.72 -63.17 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.95 Total: 28.11 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 4.14 Total: -19.08 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -2.00 Total: -66.74 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -2.05 Total: -48.96 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.67 Total: 43.50 kcal Total: -65.88 2.72 -63.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888428919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.257 kcal (2) G-P(sol) polarization free energy of solvation -65.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds