Wall clock time and date at job start Tue Mar 31 2020 11:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86793 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47134 * 273.72893 * 3 2 1 5 5 H 1.48497 * 109.47208 * 33.72762 * 3 2 1 6 6 H 1.48501 * 109.47434 * 153.72957 * 3 2 1 7 7 C 1.39937 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00174 * 346.69371 * 7 2 1 9 9 C 1.41440 * 120.00116 * 166.69942 * 7 2 1 10 10 C 1.40784 * 120.17179 * 329.74254 * 9 7 2 11 11 C 1.37719 * 120.03492 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.41508 * 359.97438 * 11 10 9 13 13 C 1.39885 * 120.35540 * 0.02562 * 12 11 10 14 14 C 1.47881 * 120.02367 * 179.97438 * 13 12 11 15 15 O 1.21546 * 120.00539 * 224.21841 * 14 13 12 16 16 N 1.34785 * 119.99768 * 44.22185 * 14 13 12 17 17 C 1.47154 * 121.05582 * 356.21753 * 16 14 13 18 18 C 1.53280 * 108.48060 * 129.22050 * 17 16 14 19 19 O 1.42205 * 109.01998 * 52.10041 * 18 17 16 20 20 C 1.42781 * 114.62117 * 297.47314 * 19 18 17 21 21 H 1.08998 * 109.34795 * 303.39891 * 20 19 18 22 22 C 1.52787 * 109.99078 * 183.30436 * 20 19 18 23 23 O 1.42880 * 109.73361 * 296.65116 * 22 20 19 24 24 C 1.42950 * 113.86016 * 298.94639 * 23 22 20 25 25 C 1.53026 * 109.28083 * 61.71508 * 24 23 22 26 26 C 1.47302 * 121.05633 * 176.18888 * 16 14 13 27 27 H 1.09002 * 110.71657 * 351.61573 * 26 16 14 28 28 C 1.39034 * 119.95099 * 0.24101 * 13 12 11 29 29 H 0.97002 * 119.99676 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.98498 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.78940 * 179.97438 * 11 10 9 32 32 H 1.07995 * 119.81979 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.63213 * 248.91535 * 17 16 14 34 34 H 1.08998 * 109.63485 * 9.31524 * 17 16 14 35 35 H 1.08996 * 109.49716 * 172.07044 * 18 17 16 36 36 H 1.08998 * 109.49640 * 292.14099 * 18 17 16 37 37 H 1.09004 * 109.43052 * 56.72822 * 22 20 19 38 38 H 1.08993 * 109.42996 * 176.56972 * 22 20 19 39 39 H 1.09001 * 109.50710 * 181.65993 * 24 23 22 40 40 H 1.08999 * 109.50469 * 301.73250 * 24 23 22 41 41 H 1.09002 * 109.48342 * 61.97407 * 25 24 23 42 42 H 1.08997 * 109.48731 * 182.01155 * 25 24 23 43 43 H 1.07994 * 120.19940 * 179.72386 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4110 2.0918 -1.3971 5 1 1.4815 2.6286 0.7774 6 1 3.5771 1.4186 0.6197 7 6 2.0079 -1.2119 0.0005 8 1 1.4896 -2.1346 0.2162 9 6 3.3939 -1.2286 -0.2812 10 6 3.9529 -0.2635 -1.1404 11 6 5.3028 -0.2821 -1.4124 12 6 6.1185 -1.2453 -0.8455 13 6 5.5808 -2.2122 0.0106 14 6 6.4592 -3.2386 0.6120 15 8 6.1047 -4.4009 0.6409 16 7 7.6531 -2.8853 1.1284 17 6 8.1417 -1.5005 1.0326 18 6 8.5733 -1.0399 2.4294 19 8 9.4734 -1.9960 2.9751 20 6 8.9155 -3.2961 3.1678 21 1 8.0344 -3.2201 3.8050 22 6 9.9426 -4.2123 3.8311 23 8 11.0675 -4.3817 2.9666 24 6 10.7460 -4.9838 1.7106 25 6 9.7654 -4.0842 0.9552 26 6 8.5098 -3.8728 1.8070 27 1 7.9790 -4.8151 1.9429 28 6 4.2191 -2.2109 0.2911 29 1 -0.4850 0.8401 -0.0004 30 1 3.3228 0.4917 -1.5864 31 1 5.7274 0.4599 -2.0725 32 1 7.1757 -1.2511 -1.0657 33 1 8.9935 -1.4588 0.3537 34 1 7.3452 -0.8560 0.6609 35 1 9.0673 -0.0711 2.3565 36 1 7.6965 -0.9539 3.0712 37 1 10.2712 -3.7682 4.7708 38 1 9.4882 -5.1830 4.0292 39 1 11.6553 -5.1059 1.1221 40 1 10.2892 -5.9588 1.8808 41 1 10.2355 -3.1213 0.7552 42 1 9.4902 -4.5571 0.0125 43 1 3.7991 -2.9581 0.9479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888772948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:51 Heat of formation + Delta-G solvation = -89.458306 kcal Electronic energy + Delta-G solvation = -27304.505285 eV Core-core repulsion = 23507.873267 eV Total energy + Delta-G solvation = -3796.632018 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.97465 -39.11070 -37.64637 -37.32879 -34.94106 -33.82708 -32.67459 -31.10779 -30.61868 -30.11240 -28.40700 -25.78418 -24.96986 -23.80939 -23.45880 -22.53636 -20.83567 -20.15316 -19.12118 -17.81218 -16.87789 -16.75660 -16.51386 -16.37569 -16.00707 -15.54330 -15.07438 -14.98950 -14.74523 -14.53941 -14.17676 -13.70578 -13.55586 -13.34249 -13.08799 -12.82673 -12.72043 -12.42351 -12.27559 -11.89689 -11.77045 -11.62294 -11.33176 -11.20560 -11.09265 -10.80394 -10.61498 -10.40520 -10.15098 -10.01431 -9.93328 -9.80408 -9.43724 -9.18164 -8.47733 -7.95435 -7.79909 -7.06106 -4.64853 1.93387 2.40800 2.95020 2.98517 3.11094 3.16508 3.29826 3.38054 3.81322 3.84757 4.32329 4.40395 4.53653 4.67747 4.80826 4.90077 5.01864 5.07671 5.12669 5.13612 5.19122 5.22046 5.39383 5.43053 5.48963 5.63386 5.68534 5.78011 5.80663 5.83562 5.96424 6.03595 6.24692 6.49405 6.54262 6.62491 6.88684 6.88996 7.08690 7.13444 7.27994 7.39068 7.52816 7.65438 7.84934 8.19513 8.42652 8.46449 8.62667 9.96014 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.003497 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.073769 B = 8004.044796 C = 8218.632028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.080 3.920 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.243 1.243 7 C -0.440 4.440 8 H 0.094 0.906 9 C 0.087 3.913 10 C -0.223 4.223 11 C -0.079 4.079 12 C -0.225 4.225 13 C -0.099 4.099 14 C 0.571 3.429 15 O -0.543 6.543 16 N -0.611 5.611 17 C 0.056 3.944 18 C 0.047 3.953 19 O -0.365 6.365 20 C 0.049 3.951 21 H 0.071 0.929 22 C 0.074 3.926 23 O -0.371 6.371 24 C 0.063 3.937 25 C -0.160 4.160 26 C 0.114 3.886 27 H 0.108 0.892 28 C -0.148 4.148 29 H 0.287 0.713 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.530 -1.772 4.755 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.166 1.166 7 C -0.468 4.468 8 H 0.112 0.888 9 C 0.084 3.916 10 C -0.243 4.243 11 C -0.098 4.098 12 C -0.245 4.245 13 C -0.102 4.102 14 C 0.363 3.637 15 O -0.421 6.421 16 N -0.345 5.345 17 C -0.066 4.066 18 C -0.031 4.031 19 O -0.284 6.284 20 C -0.011 4.011 21 H 0.089 0.911 22 C -0.004 4.004 23 O -0.289 6.289 24 C -0.014 4.014 25 C -0.198 4.198 26 C 0.010 3.990 27 H 0.126 0.874 28 C -0.168 4.168 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.392 -2.212 4.876 18.198 hybrid contribution -0.490 0.749 -0.363 0.966 sum 16.903 -1.464 4.512 17.556 Atomic orbital electron populations 1.69655 1.08043 1.30449 1.34770 1.26198 0.94881 1.01782 0.91015 0.86260 0.81050 0.79501 0.78938 1.19585 1.21841 1.16581 1.19560 0.91331 0.95895 1.40013 0.88844 1.17671 0.93358 0.90902 0.89689 1.21156 0.95045 1.03861 1.04203 1.20522 0.93696 0.97329 0.98220 1.20467 0.98126 0.99539 1.06356 1.19334 0.93900 0.95988 1.00954 1.18956 0.79794 0.88606 0.76374 1.90706 1.73619 1.19851 1.57893 1.48175 1.18631 1.09678 1.58027 1.22978 1.01853 0.83777 0.98040 1.22932 0.94145 0.92454 0.93549 1.87755 1.38212 1.18824 1.83590 1.23035 0.97215 0.85113 0.95699 0.91123 1.22531 0.86957 0.97192 0.93686 1.87998 1.31799 1.82003 1.27147 1.22579 0.99178 0.94728 0.84911 1.22452 0.95770 1.02091 0.99516 1.21798 0.91268 0.93938 0.92016 0.87425 1.21103 0.90550 1.02022 1.03100 0.90219 0.87885 0.88108 0.87855 0.90994 0.85726 0.87541 0.92564 0.87717 0.91269 0.88466 0.92922 0.90057 0.90509 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.86 13.93 55.55 0.77 -20.09 16 2 C 0.08 2.03 5.46 -17.34 -0.09 1.94 16 3 Si 0.92 19.71 24.40 -169.99 -4.15 15.56 16 4 H -0.27 -5.60 6.70 56.52 0.38 -5.22 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.24 -5.23 6.64 56.52 0.38 -4.86 16 7 C -0.44 -11.55 9.60 -37.73 -0.36 -11.91 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 9 C 0.09 2.12 5.14 -106.87 -0.55 1.57 16 10 C -0.22 -5.03 6.98 -38.81 -0.27 -5.30 16 11 C -0.08 -1.55 10.01 -39.72 -0.40 -1.95 16 12 C -0.23 -4.23 7.34 -38.92 -0.29 -4.51 16 13 C -0.10 -2.05 5.21 -105.04 -0.55 -2.60 16 14 C 0.57 11.13 7.32 -12.31 -0.09 11.04 16 15 O -0.54 -12.06 16.49 5.33 0.09 -11.97 16 16 N -0.61 -9.46 2.68 -165.64 -0.44 -9.90 16 17 C 0.06 0.74 4.77 -3.54 -0.02 0.72 16 18 C 0.05 0.55 6.99 37.30 0.26 0.81 16 19 O -0.37 -4.64 9.85 -40.57 -0.40 -5.04 16 20 C 0.05 0.58 2.96 -26.70 -0.08 0.50 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 22 C 0.07 0.73 6.51 37.05 0.24 0.97 16 23 O -0.37 -4.23 10.74 -40.57 -0.44 -4.67 16 24 C 0.06 0.62 6.84 37.17 0.25 0.87 16 25 C -0.16 -1.85 5.36 -26.62 -0.14 -1.99 16 26 C 0.11 1.52 2.74 -67.26 -0.18 1.33 16 27 H 0.11 1.55 7.18 -51.93 -0.37 1.17 16 28 C -0.15 -3.43 9.42 -38.44 -0.36 -3.80 16 29 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 30 H 0.10 2.30 4.38 -52.49 -0.23 2.07 16 31 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.10 1.65 6.45 -52.49 -0.34 1.31 16 33 H 0.07 0.85 7.31 -51.93 -0.38 0.47 16 34 H 0.13 1.78 4.39 -51.93 -0.23 1.55 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.99 6.73 -51.93 -0.35 0.64 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.11 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -29.32 335.23 -7.87 -37.20 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.73 Total: 6.17 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.63 Total: -12.31 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.33 Total: -29.98 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.75 Total: -21.68 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.15 Total: 15.56 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.32 -7.87 -37.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888772948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.262 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds