Wall clock time and date at job start Tue Mar 31 2020 11:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86793 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47134 * 273.72893 * 3 2 1 5 5 H 1.48497 * 109.47208 * 33.72762 * 3 2 1 6 6 H 1.48501 * 109.47434 * 153.72957 * 3 2 1 7 7 C 1.39937 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00174 * 346.69371 * 7 2 1 9 9 C 1.41440 * 120.00116 * 166.69942 * 7 2 1 10 10 C 1.40784 * 120.17179 * 329.74254 * 9 7 2 11 11 C 1.37719 * 120.03492 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.41508 * 359.97438 * 11 10 9 13 13 C 1.39885 * 120.35540 * 0.02562 * 12 11 10 14 14 C 1.47881 * 120.02367 * 179.97438 * 13 12 11 15 15 O 1.21546 * 120.00539 * 224.21841 * 14 13 12 16 16 N 1.34785 * 119.99768 * 44.22185 * 14 13 12 17 17 C 1.47154 * 121.05582 * 356.21753 * 16 14 13 18 18 C 1.53280 * 108.48060 * 129.22050 * 17 16 14 19 19 O 1.42205 * 109.01998 * 52.10041 * 18 17 16 20 20 C 1.42781 * 114.62117 * 297.47314 * 19 18 17 21 21 H 1.08998 * 109.34795 * 303.39891 * 20 19 18 22 22 C 1.52787 * 109.99078 * 183.30436 * 20 19 18 23 23 O 1.42880 * 109.73361 * 296.65116 * 22 20 19 24 24 C 1.42950 * 113.86016 * 298.94639 * 23 22 20 25 25 C 1.53026 * 109.28083 * 61.71508 * 24 23 22 26 26 C 1.47302 * 121.05633 * 176.18888 * 16 14 13 27 27 H 1.09002 * 110.71657 * 351.61573 * 26 16 14 28 28 C 1.39034 * 119.95099 * 0.24101 * 13 12 11 29 29 H 0.97002 * 119.99676 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.98498 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.78940 * 179.97438 * 11 10 9 32 32 H 1.07995 * 119.81979 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.63213 * 248.91535 * 17 16 14 34 34 H 1.08998 * 109.63485 * 9.31524 * 17 16 14 35 35 H 1.08996 * 109.49716 * 172.07044 * 18 17 16 36 36 H 1.08998 * 109.49640 * 292.14099 * 18 17 16 37 37 H 1.09004 * 109.43052 * 56.72822 * 22 20 19 38 38 H 1.08993 * 109.42996 * 176.56972 * 22 20 19 39 39 H 1.09001 * 109.50710 * 181.65993 * 24 23 22 40 40 H 1.08999 * 109.50469 * 301.73250 * 24 23 22 41 41 H 1.09002 * 109.48342 * 61.97407 * 25 24 23 42 42 H 1.08997 * 109.48731 * 182.01155 * 25 24 23 43 43 H 1.07994 * 120.19940 * 179.72386 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4110 2.0918 -1.3971 5 1 1.4815 2.6286 0.7774 6 1 3.5771 1.4186 0.6197 7 6 2.0079 -1.2119 0.0005 8 1 1.4896 -2.1346 0.2162 9 6 3.3939 -1.2286 -0.2812 10 6 3.9529 -0.2635 -1.1404 11 6 5.3028 -0.2821 -1.4124 12 6 6.1185 -1.2453 -0.8455 13 6 5.5808 -2.2122 0.0106 14 6 6.4592 -3.2386 0.6120 15 8 6.1047 -4.4009 0.6409 16 7 7.6531 -2.8853 1.1284 17 6 8.1417 -1.5005 1.0326 18 6 8.5733 -1.0399 2.4294 19 8 9.4734 -1.9960 2.9751 20 6 8.9155 -3.2961 3.1678 21 1 8.0344 -3.2201 3.8050 22 6 9.9426 -4.2123 3.8311 23 8 11.0675 -4.3817 2.9666 24 6 10.7460 -4.9838 1.7106 25 6 9.7654 -4.0842 0.9552 26 6 8.5098 -3.8728 1.8070 27 1 7.9790 -4.8151 1.9429 28 6 4.2191 -2.2109 0.2911 29 1 -0.4850 0.8401 -0.0004 30 1 3.3228 0.4917 -1.5864 31 1 5.7274 0.4599 -2.0725 32 1 7.1757 -1.2511 -1.0657 33 1 8.9935 -1.4588 0.3537 34 1 7.3452 -0.8560 0.6609 35 1 9.0673 -0.0711 2.3565 36 1 7.6965 -0.9539 3.0712 37 1 10.2712 -3.7682 4.7708 38 1 9.4882 -5.1830 4.0292 39 1 11.6553 -5.1059 1.1221 40 1 10.2892 -5.9588 1.8808 41 1 10.2355 -3.1213 0.7552 42 1 9.4902 -4.5571 0.0125 43 1 3.7991 -2.9581 0.9479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888772948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:50 Heat of formation + Delta-G solvation = -108.997067 kcal Electronic energy + Delta-G solvation = -27305.352550 eV Core-core repulsion = 23507.873267 eV Total energy + Delta-G solvation = -3797.479282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11957 -40.45770 -39.06013 -38.52493 -36.20790 -35.58651 -33.81927 -32.34202 -32.00543 -31.71058 -29.48863 -27.41460 -26.27126 -24.84978 -24.49522 -23.87232 -22.55839 -21.45856 -20.31202 -19.40454 -18.06419 -17.94275 -17.79607 -17.67072 -17.19341 -16.66864 -16.53327 -16.24476 -16.10273 -15.77077 -15.42099 -15.04079 -14.77287 -14.65481 -14.42671 -14.33500 -14.10718 -13.87326 -13.43389 -13.28670 -13.09852 -12.93210 -12.70930 -12.56521 -12.29743 -12.15083 -11.97234 -11.71002 -11.65672 -11.41617 -11.23610 -11.14768 -10.92727 -10.52567 -9.76731 -9.63313 -9.50150 -8.92043 -6.60399 0.24004 0.68881 1.25423 1.41169 1.48445 1.60045 1.79138 2.10036 2.50708 2.55520 3.00825 3.35168 3.37703 3.51472 3.68135 3.82284 3.88575 3.96918 4.12453 4.20617 4.23815 4.26794 4.34081 4.40889 4.45176 4.50008 4.53334 4.68701 4.76379 4.77728 4.82591 4.84093 4.86906 4.94655 5.08601 5.10442 5.34793 5.38896 5.57545 5.66172 5.79914 6.02464 6.03318 6.19905 6.22337 6.27106 6.60382 6.70144 6.97430 8.16804 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.003497 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.073769 B = 8004.044796 C = 8218.632028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.041 3.959 3 Si 0.973 3.027 4 H -0.249 1.249 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.486 4.486 8 H 0.047 0.953 9 C 0.073 3.927 10 C -0.227 4.227 11 C -0.075 4.075 12 C -0.190 4.190 13 C -0.102 4.102 14 C 0.567 3.433 15 O -0.582 6.582 16 N -0.601 5.601 17 C 0.051 3.949 18 C 0.047 3.953 19 O -0.370 6.370 20 C 0.050 3.950 21 H 0.065 0.935 22 C 0.074 3.926 23 O -0.384 6.384 24 C 0.064 3.936 25 C -0.151 4.151 26 C 0.107 3.893 27 H 0.092 0.908 28 C -0.174 4.174 29 H 0.295 0.705 30 H 0.108 0.892 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.047 0.953 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.102 0.217 4.075 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.173 4.173 3 Si 0.795 3.205 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.164 1.164 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.070 3.930 10 C -0.246 4.246 11 C -0.093 4.093 12 C -0.210 4.210 13 C -0.105 4.105 14 C 0.358 3.642 15 O -0.463 6.463 16 N -0.333 5.333 17 C -0.070 4.070 18 C -0.030 4.030 19 O -0.288 6.288 20 C -0.009 4.009 21 H 0.083 0.917 22 C -0.003 4.003 23 O -0.302 6.302 24 C -0.013 4.013 25 C -0.190 4.190 26 C 0.004 3.996 27 H 0.110 0.890 28 C -0.195 4.195 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 22.009 -0.216 4.204 22.408 hybrid contribution -1.669 0.003 -0.153 1.676 sum 20.340 -0.212 4.051 20.741 Atomic orbital electron populations 1.69701 1.09407 1.31700 1.37188 1.26989 0.95562 1.04613 0.90164 0.85402 0.79677 0.75372 0.80028 1.17385 1.20794 1.16448 1.19492 0.92828 0.95137 1.44064 0.93428 1.17726 0.92584 0.92174 0.90512 1.21356 0.96741 1.03072 1.03408 1.21026 0.92268 0.98063 0.97935 1.20996 1.00052 0.97034 1.02876 1.19562 0.93030 0.96763 1.01178 1.18796 0.80897 0.87705 0.76841 1.90687 1.74758 1.21159 1.59695 1.48220 1.17357 1.11345 1.56423 1.23183 1.02149 0.81909 0.99773 1.23041 0.94215 0.93501 0.92232 1.87766 1.38491 1.19016 1.83522 1.23101 0.97832 0.85333 0.94682 0.91700 1.22663 0.86286 0.97656 0.93706 1.87987 1.32379 1.82167 1.27677 1.22690 0.99635 0.94524 0.84459 1.22392 0.94949 1.02490 0.99158 1.22017 0.91444 0.92946 0.93232 0.88982 1.21037 0.92145 1.02168 1.04121 0.89418 0.87476 0.83278 0.83680 0.88527 0.86573 0.84480 0.93501 0.86342 0.89595 0.86506 0.91949 0.90081 0.90891 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.76 13.93 21.82 0.30 -46.46 16 2 C 0.04 2.15 5.46 85.25 0.47 2.61 16 3 Si 0.97 40.28 24.40 68.60 1.67 41.95 16 4 H -0.25 -9.41 6.70 99.48 0.67 -8.75 16 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.24 -9.79 6.64 99.48 0.66 -9.13 16 7 C -0.49 -27.50 9.60 23.47 0.23 -27.28 16 8 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 9 C 0.07 3.66 5.14 -21.32 -0.11 3.55 16 10 C -0.23 -9.80 6.98 22.77 0.16 -9.64 16 11 C -0.08 -2.60 10.01 22.18 0.22 -2.38 16 12 C -0.19 -6.38 7.34 22.70 0.17 -6.21 16 13 C -0.10 -4.16 5.21 -20.13 -0.10 -4.27 16 14 C 0.57 21.81 7.32 86.80 0.64 22.45 16 15 O -0.58 -26.47 16.49 -3.86 -0.06 -26.54 16 16 N -0.60 -17.45 2.68 -796.23 -2.14 -19.58 16 17 C 0.05 1.15 4.77 86.35 0.41 1.56 16 18 C 0.05 0.94 6.99 72.08 0.50 1.45 16 19 O -0.37 -8.22 9.85 -143.87 -1.42 -9.64 16 20 C 0.05 1.08 2.96 30.61 0.09 1.17 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 22 C 0.07 1.27 6.51 71.91 0.47 1.74 16 23 O -0.38 -7.56 10.74 -143.87 -1.55 -9.10 16 24 C 0.06 1.06 6.84 71.99 0.49 1.55 16 25 C -0.15 -3.08 5.36 30.66 0.16 -2.92 16 26 C 0.11 2.67 2.74 44.99 0.12 2.79 16 27 H 0.09 2.61 7.18 -2.39 -0.02 2.59 16 28 C -0.17 -8.47 9.42 23.01 0.22 -8.25 16 29 H 0.30 14.41 8.30 -92.71 -0.77 13.64 16 30 H 0.11 4.54 4.38 -2.91 -0.01 4.53 16 31 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.15 3.74 6.45 -2.91 -0.02 3.72 16 33 H 0.10 1.78 7.31 -2.38 -0.02 1.76 16 34 H 0.12 2.81 4.39 -2.39 -0.01 2.80 16 35 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.67 6.73 -2.39 -0.02 1.65 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -68.62 335.23 1.89 -66.72 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.95 Total: 24.73 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 4.13 Total: -22.09 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -1.83 Total: -66.04 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -3.03 Total: -45.28 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.67 Total: 41.95 kcal Total: -68.62 1.89 -66.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888772948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.273 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds