Wall clock time and date at job start Tue Mar 31 2020 11:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00418 * 2 1 4 4 H 1.48501 * 109.47097 * 89.99507 * 3 2 1 5 5 H 1.48500 * 109.47252 * 209.99622 * 3 2 1 6 6 H 1.48507 * 109.46725 * 329.99708 * 3 2 1 7 7 C 1.38708 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99643 * 0.02562 * 7 2 1 9 9 O 1.34813 * 120.00074 * 179.97438 * 7 2 1 10 10 C 1.35522 * 116.99496 * 174.94676 * 9 7 2 11 11 C 1.38829 * 120.16388 * 5.61014 * 10 9 7 12 12 C 1.38028 * 120.07025 * 179.72009 * 11 10 9 13 13 C 1.38575 * 120.39906 * 0.55271 * 12 11 10 14 14 C 1.37821 * 120.32513 * 359.72659 * 13 12 11 15 15 C 1.39669 * 119.92064 * 359.97438 * 14 13 12 16 16 C 1.47533 * 120.19772 * 179.97438 * 15 14 13 17 17 O 1.21592 * 120.00040 * 180.02562 * 16 15 14 18 18 N 1.34777 * 119.99826 * 0.02562 * 16 15 14 19 19 C 1.46500 * 119.99655 * 180.02562 * 18 16 15 20 20 H 1.08998 * 110.46078 * 36.15504 * 19 18 16 21 21 C 1.54477 * 110.51166 * 273.54709 * 19 18 16 22 22 O 1.44426 * 104.80423 * 265.33469 * 21 19 18 23 23 C 1.44427 * 105.27775 * 319.48779 * 22 21 19 24 24 C 1.54482 * 104.80090 * 40.51259 * 23 22 21 25 25 H 1.08994 * 110.51084 * 94.66126 * 24 23 22 26 26 C 1.53000 * 110.51096 * 217.37911 * 24 23 22 27 27 C 1.53005 * 117.49589 * 243.26248 * 26 24 23 28 28 C 1.52993 * 59.99903 * 252.51087 * 27 26 24 29 29 H 0.97003 * 119.99520 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.96277 * 359.97438 * 11 10 9 31 31 H 1.07995 * 119.79820 * 180.29963 * 12 11 10 32 32 H 1.08003 * 119.83566 * 179.70375 * 13 12 11 33 33 H 1.08004 * 120.03908 * 179.97438 * 14 13 12 34 34 H 0.96998 * 120.00150 * 0.02562 * 18 16 15 35 35 H 1.08998 * 110.37505 * 24.17334 * 21 19 18 36 36 H 1.09005 * 110.36816 * 146.50709 * 21 19 18 37 37 H 1.08990 * 110.37124 * 159.34176 * 23 22 21 38 38 H 1.09003 * 110.37122 * 281.68528 * 23 22 21 39 39 H 1.09004 * 115.55118 * 28.96857 * 26 24 23 40 40 H 1.09005 * 117.49423 * 0.02562 * 27 26 24 41 41 H 1.09000 * 117.49925 * 145.01637 * 27 26 24 42 42 H 1.09002 * 117.49654 * 252.50767 * 28 27 26 43 43 H 1.09001 * 117.50435 * 107.49041 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5469 1.4400 -0.6999 6 1 1.4467 2.6526 -0.7001 7 6 2.0087 -1.2012 0.0005 8 1 1.4686 -2.1365 0.0005 9 8 3.3568 -1.2013 0.0000 10 6 3.9720 -2.4041 0.1069 11 6 3.2242 -3.5737 0.0936 12 6 3.8533 -4.7979 0.1969 13 6 5.2312 -4.8697 0.3258 14 6 5.9890 -3.7187 0.3466 15 6 5.3670 -2.4730 0.2369 16 6 6.1722 -1.2370 0.2591 17 8 5.6270 -0.1543 0.1638 18 7 7.5122 -1.3079 0.3850 19 6 8.3117 -0.0805 0.4076 20 1 7.7778 0.7124 0.9313 21 6 8.6644 0.3623 -1.0297 22 8 9.9700 -0.2023 -1.2798 23 6 10.7039 -0.0241 -0.0487 24 6 9.6843 -0.3406 1.0678 25 1 9.7679 -1.3823 1.3773 26 6 9.8902 0.5932 2.2622 27 6 10.3021 -0.0412 3.5922 28 6 8.8838 0.5032 3.4110 29 1 -0.4849 0.8401 -0.0004 30 1 2.1495 -3.5257 -0.0017 31 1 3.2677 -5.7052 0.1812 32 1 5.7135 -5.8323 0.4107 33 1 7.0625 -3.7800 0.4477 34 1 7.9472 -2.1715 0.4607 35 1 7.9373 -0.0344 -1.7382 36 1 8.7028 1.4498 -1.0930 37 1 11.5434 -0.7177 -0.0037 38 1 11.0550 1.0042 0.0383 39 1 10.2974 1.5763 2.0257 40 1 10.4268 -1.1239 3.6160 41 1 10.9805 0.5243 4.2309 42 1 8.6291 1.4269 3.9307 43 1 8.0749 -0.2212 3.3159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891062779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:47 Heat of formation + Delta-G solvation = -70.939360 kcal Electronic energy + Delta-G solvation = -26812.982543 eV Core-core repulsion = 23017.153567 eV Total energy + Delta-G solvation = -3795.828976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.67736 -40.88830 -39.50037 -38.15733 -37.85406 -35.44751 -34.52498 -32.58915 -31.30065 -30.80748 -29.52616 -27.29817 -25.16569 -24.17651 -23.62322 -23.18460 -22.60540 -21.54261 -21.03203 -19.80695 -19.40512 -18.09378 -17.77053 -17.29337 -16.88321 -16.58551 -16.11729 -16.06780 -15.87195 -15.70898 -15.50922 -15.37070 -15.13453 -14.75104 -14.37051 -14.18075 -14.04166 -13.47095 -13.17628 -12.98710 -12.87316 -12.79405 -12.60200 -12.56438 -12.37989 -12.36625 -12.12929 -12.02989 -11.53669 -11.13384 -11.02188 -10.98082 -10.97006 -10.70703 -10.08031 -9.81827 -9.15986 -8.58993 -6.27721 0.03683 0.63778 1.23384 1.28436 1.56614 1.99157 2.12401 2.28192 2.74375 2.75842 2.95383 3.01318 3.15626 3.50940 3.62976 3.76111 3.89079 3.93963 4.00615 4.16153 4.17524 4.25082 4.31313 4.32237 4.46348 4.50111 4.54559 4.66618 4.74583 4.79991 4.80646 4.84346 4.98073 5.04381 5.05008 5.24476 5.27325 5.27940 5.46032 5.47982 5.60385 5.68006 5.75865 5.82765 6.14404 6.59165 6.78045 7.35809 7.57620 8.51508 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.004458 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.461806 B = 6278.746980 C = 7376.777450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.027 3.973 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.403 4.403 8 H 0.092 0.908 9 O -0.208 6.208 10 C 0.162 3.838 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.189 4.189 14 C -0.030 4.030 15 C -0.234 4.234 16 C 0.557 3.443 17 O -0.569 6.569 18 N -0.706 5.706 19 C 0.119 3.881 20 H 0.082 0.918 21 C 0.037 3.963 22 O -0.387 6.387 23 C 0.050 3.950 24 C -0.084 4.084 25 H 0.107 0.893 26 C -0.148 4.148 27 C -0.153 4.153 28 C -0.198 4.198 29 H 0.286 0.714 30 H 0.115 0.885 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.412 0.588 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.982 -5.657 4.762 26.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.479 4.479 8 H 0.109 0.891 9 O -0.112 6.112 10 C 0.109 3.891 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.207 4.207 14 C -0.049 4.049 15 C -0.239 4.239 16 C 0.347 3.653 17 O -0.449 6.449 18 N -0.360 5.360 19 C 0.014 3.986 20 H 0.100 0.900 21 C -0.041 4.041 22 O -0.306 6.306 23 C -0.026 4.026 24 C -0.103 4.103 25 H 0.125 0.875 26 C -0.166 4.166 27 C -0.190 4.190 28 C -0.236 4.236 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.169 0.831 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.562 -4.611 4.469 25.388 hybrid contribution -0.923 0.647 0.088 1.130 sum 23.640 -3.964 4.558 24.399 Atomic orbital electron populations 1.69684 1.06434 1.29555 1.49416 1.25035 0.95621 1.01391 0.95321 0.85416 0.79117 0.78532 0.79006 1.20196 1.18968 1.19074 1.20899 0.78400 0.96280 1.52362 0.89102 1.83766 1.20766 1.26910 1.79803 1.19761 0.92071 0.85707 0.91594 1.21335 1.00582 0.92960 1.12132 1.21448 0.95881 0.96212 0.92468 1.21231 0.93061 0.99369 1.07072 1.21337 1.00669 0.89444 0.93414 1.19282 0.90094 0.94990 1.19529 1.18376 0.82583 0.88676 0.75634 1.90843 1.72369 1.31097 1.50571 1.45703 1.05011 1.09838 1.75472 1.22337 0.92418 0.87940 0.95946 0.89972 1.23783 0.85283 0.98609 0.96449 1.89141 1.24816 1.81362 1.35305 1.23712 0.94675 1.03056 0.81150 1.22353 0.91728 1.01227 0.94996 0.87528 1.22276 1.04881 1.00669 0.88769 1.23110 0.96468 1.01495 0.97888 1.22936 0.93823 1.03421 1.03375 0.90450 0.86723 0.83134 0.81584 0.81897 0.74975 0.90928 0.90849 0.86254 0.90621 0.86389 0.87707 0.87254 0.88890 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.98 13.96 21.62 0.30 -55.68 16 2 C 0.03 1.62 5.49 84.85 0.47 2.09 16 3 Si 0.96 51.04 28.62 68.60 1.96 53.00 16 4 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 5 H -0.27 -15.19 7.11 99.48 0.71 -14.48 16 6 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.40 -24.76 9.95 67.93 0.68 -24.09 16 8 H 0.09 5.64 5.44 -2.91 -0.02 5.63 16 9 O -0.21 -12.17 6.67 0.82 0.01 -12.17 16 10 C 0.16 7.86 6.66 22.91 0.15 8.01 16 11 C -0.25 -10.71 9.16 22.36 0.20 -10.51 16 12 C -0.04 -1.28 10.03 22.30 0.22 -1.06 16 13 C -0.19 -4.67 10.02 22.25 0.22 -4.45 16 14 C -0.03 -0.82 9.53 22.52 0.21 -0.60 16 15 C -0.23 -9.20 5.89 -19.99 -0.12 -9.32 16 16 C 0.56 22.13 7.76 86.69 0.67 22.80 16 17 O -0.57 -28.92 14.88 16.89 0.25 -28.66 16 18 N -0.71 -19.33 5.07 -440.88 -2.23 -21.57 16 19 C 0.12 2.99 2.85 46.01 0.13 3.12 16 20 H 0.08 2.51 6.96 -2.39 -0.02 2.49 16 21 C 0.04 0.97 7.35 72.48 0.53 1.50 16 22 O -0.39 -8.95 11.65 -148.98 -1.74 -10.68 16 23 C 0.05 0.74 7.18 72.49 0.52 1.26 16 24 C -0.08 -1.34 3.07 -9.77 -0.03 -1.37 16 25 H 0.11 1.38 7.46 -2.39 -0.02 1.36 16 26 C -0.15 -2.18 5.09 -10.79 -0.05 -2.24 16 27 C -0.15 -1.88 10.19 30.59 0.31 -1.56 16 28 C -0.20 -3.67 9.66 30.59 0.30 -3.38 16 29 H 0.29 16.17 8.31 -92.71 -0.77 15.40 16 30 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 31 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.16 2.76 6.40 -2.91 -0.02 2.75 16 34 H 0.41 8.14 6.34 -92.71 -0.59 7.55 16 35 H 0.07 2.27 8.06 -2.39 -0.02 2.25 16 36 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 0.95 7.63 -2.39 -0.02 0.93 16 39 H 0.12 1.53 7.78 -2.38 -0.02 1.52 16 40 H 0.10 1.09 8.07 -2.38 -0.02 1.08 16 41 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -79.86 356.97 3.43 -76.43 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.46 Total: 19.12 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.42 Total: -19.79 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.93 Total: -77.25 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -1.48 Total: -51.51 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 1.96 Total: 53.00 kcal Total: -79.86 3.43 -76.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891062779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.489 kcal (2) G-P(sol) polarization free energy of solvation -79.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds