Wall clock time and date at job start Tue Mar 31 2020 11:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37247 * 119.78183 * 2 1 4 4 C 1.38673 * 120.59208 * 179.97438 * 3 2 1 5 5 C 1.37763 * 119.98484 * 0.05049 * 4 3 2 6 6 C 1.39217 * 120.19656 * 359.92669 * 5 4 3 7 7 S 1.76199 * 131.17700 * 180.02562 * 6 5 4 8 8 C 1.75809 * 90.45176 * 179.97438 * 7 6 5 9 9 N 1.38001 * 124.81101 * 179.97438 * 8 7 6 10 10 C 1.46507 * 119.99969 * 0.02932 * 9 8 7 11 11 C 1.53036 * 109.45637 * 204.99501 * 10 9 8 12 12 C 1.53195 * 109.31024 * 178.61463 * 11 10 9 13 13 N 1.46925 * 108.77517 * 54.63748 * 12 11 10 14 14 C 1.36934 * 120.63215 * 126.41523 * 13 12 11 15 15 H 1.08006 * 120.00121 * 207.65629 * 14 13 12 16 16 C 1.38814 * 119.99947 * 27.65531 * 14 13 12 17 17 N 1.31612 * 120.00200 * 17.38313 * 16 14 13 18 18 Si 1.86798 * 119.99944 * 197.37947 * 16 14 13 19 19 H 1.48506 * 109.47458 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47335 * 120.00061 * 18 16 14 21 21 H 1.48504 * 109.47113 * 240.00357 * 18 16 14 22 22 C 1.46931 * 118.73805 * 306.38913 * 13 12 11 23 23 C 1.53037 * 109.45852 * 84.92993 * 10 9 8 24 24 N 1.28885 * 110.37587 * 0.24822 * 8 7 6 25 25 C 1.34822 * 117.87763 * 359.54178 * 24 8 7 26 26 H 1.08994 * 109.47080 * 270.01843 * 1 2 3 27 27 H 1.08998 * 109.47035 * 30.01866 * 1 2 3 28 28 H 1.09001 * 109.47004 * 150.01795 * 1 2 3 29 29 H 1.08002 * 119.70315 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.00667 * 180.02562 * 4 3 2 31 31 H 1.07995 * 119.90314 * 179.97438 * 5 4 3 32 32 H 0.96999 * 120.00262 * 180.02562 * 9 8 7 33 33 H 1.08998 * 109.44540 * 324.96475 * 10 9 8 34 34 H 1.08999 * 109.50418 * 298.56725 * 11 10 9 35 35 H 1.09000 * 109.49813 * 58.66988 * 11 10 9 36 36 H 1.08996 * 109.58732 * 174.42320 * 12 11 10 37 37 H 1.09007 * 109.58748 * 294.84993 * 12 11 10 38 38 H 0.96996 * 120.00390 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.58954 * 293.82227 * 22 13 12 40 40 H 1.08994 * 109.70320 * 173.46363 * 22 13 12 41 41 H 1.09009 * 109.50135 * 301.33722 * 23 10 9 42 42 H 1.09001 * 109.49845 * 61.43160 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.1912 0.0000 4 6 3.5753 1.2108 0.0005 5 6 4.2806 0.0274 0.0000 6 6 3.6055 -1.1901 0.0005 7 16 4.2028 -2.8478 0.0007 8 6 2.5535 -3.4567 0.0021 9 7 2.2070 -4.7925 0.0024 10 6 3.2511 -5.8202 0.0020 11 6 2.6968 -7.1099 -0.6074 12 6 3.8011 -8.1713 -0.6378 13 7 4.3428 -8.3291 0.7187 14 6 4.4022 -9.5642 1.3070 15 1 4.3624 -9.6526 2.3827 16 6 4.5134 -10.7028 0.5208 17 7 4.9015 -10.6017 -0.7328 18 14 4.1125 -12.3787 1.2420 19 1 3.7037 -12.2221 2.6610 20 1 3.0030 -12.9963 0.4721 21 1 5.3126 -13.2501 1.1664 22 6 4.8203 -7.1365 1.4319 23 6 3.7045 -6.0868 1.4392 24 7 1.7141 -2.4788 -0.0028 25 6 2.2077 -1.2242 0.0015 26 1 -0.3633 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6403 2.1216 0.0004 30 1 4.1021 2.1536 0.0009 31 1 5.3604 0.0442 0.0000 32 1 1.2721 -5.0511 0.0028 33 1 4.0998 -5.4750 -0.5884 34 1 1.8636 -7.4691 -0.0033 35 1 2.3526 -6.9139 -1.6229 36 1 3.3867 -9.1201 -0.9784 37 1 4.5950 -7.8533 -1.3137 38 1 4.9796 -11.3973 -1.2821 39 1 5.6972 -6.7342 0.9250 40 1 5.0800 -7.4008 2.4570 41 1 4.0775 -5.1625 1.8805 42 1 2.8618 -6.4555 2.0240 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892403874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:03 Heat of formation + Delta-G solvation = 70.930652 kcal Electronic energy + Delta-G solvation = -23496.189739 eV Core-core repulsion = 20181.558330 eV Total energy + Delta-G solvation = -3314.631409 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.22747 -38.56443 -36.90185 -34.83155 -32.85133 -32.29114 -30.46842 -29.78242 -28.78943 -26.76184 -25.14602 -24.05201 -22.50566 -22.25700 -21.36306 -21.29679 -19.43196 -17.99420 -17.32555 -16.68664 -16.18058 -15.47170 -15.06616 -14.98967 -14.70138 -14.44077 -14.02753 -13.74053 -13.53228 -13.40878 -13.12673 -12.88731 -12.58329 -12.50482 -12.41643 -11.98819 -11.63404 -11.61745 -11.21934 -11.08626 -10.82064 -10.74006 -10.61752 -10.44915 -10.17623 -9.94820 -9.86936 -9.71407 -9.52126 -9.46839 -8.57093 -8.04943 -7.59106 -6.81006 -5.88810 -3.31010 0.68679 1.09866 1.10137 1.74012 2.51320 2.97950 3.32152 3.40664 3.42501 3.68936 4.42137 4.45126 4.64306 4.82396 5.04237 5.12975 5.22411 5.22891 5.31833 5.37595 5.39285 5.52411 5.55063 5.58982 5.67302 5.87247 6.03678 6.08345 6.10697 6.19683 6.26029 6.30249 6.33615 6.40086 6.44304 6.63041 6.68114 6.80927 6.85187 7.17853 7.37782 7.51037 7.72043 7.93293 8.34398 9.10775 9.73606 10.29250 11.20315 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.035810 B = 0.002690 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.726375 B =10406.862513 C =10760.300102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.062 4.062 3 C -0.102 4.102 4 C -0.129 4.129 5 C -0.063 4.063 6 C -0.202 4.202 7 S 0.047 5.953 8 C 0.394 3.606 9 N -0.677 5.677 10 C 0.152 3.848 11 C -0.145 4.145 12 C 0.174 3.826 13 N -0.592 5.592 14 C -0.254 4.254 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.290 1.290 22 C 0.148 3.852 23 C -0.147 4.147 24 N -0.564 5.564 25 C 0.142 3.858 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.411 0.589 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.023 0.977 38 H 0.255 0.745 39 H 0.021 0.979 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.736 20.768 0.163 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.065 4.065 3 C -0.123 4.123 4 C -0.151 4.151 5 C -0.086 4.086 6 C -0.322 4.322 7 S 0.294 5.706 8 C 0.016 3.984 9 N -0.314 5.314 10 C 0.049 3.951 11 C -0.185 4.185 12 C 0.047 3.953 13 N -0.314 5.314 14 C -0.384 4.384 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.217 1.217 22 C 0.021 3.979 23 C -0.188 4.188 24 N -0.291 5.291 25 C 0.021 3.979 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.250 0.750 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.126 19.753 0.042 20.180 hybrid contribution -0.954 -0.280 0.290 1.035 sum -5.080 19.473 0.332 20.127 Atomic orbital electron populations 1.20662 0.90579 1.02720 1.02251 1.19392 0.96070 0.89584 1.01501 1.20747 0.94263 0.96812 1.00504 1.20900 0.94051 0.97290 1.02864 1.20226 0.99386 0.89573 0.99368 1.23461 0.97013 0.97539 1.14145 1.85185 1.07849 0.97296 1.80232 1.23852 0.91071 0.89910 0.93526 1.44669 1.10773 0.99110 1.76843 1.21365 0.88852 0.87047 0.97851 1.22552 1.01823 0.94741 0.99406 1.20783 0.91532 0.96597 0.86354 1.44107 1.70215 1.02622 1.14494 1.19226 1.44952 0.82654 0.91544 0.91472 1.25047 0.99726 0.98215 0.96572 1.70019 1.48770 1.28302 1.07568 0.86224 0.77780 0.84180 0.78595 1.20219 1.21499 1.21659 1.20868 0.92617 0.87410 0.97036 1.22559 1.01299 0.99725 0.95227 1.66277 1.34670 0.97435 1.30695 1.18616 0.88912 0.90418 0.99984 0.91382 0.91844 0.90890 0.85407 0.85335 0.85782 0.75044 0.90451 0.91612 0.92244 0.88645 0.95904 0.93537 0.96095 0.92161 0.92641 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.94 36.01 0.36 -0.71 16 2 C -0.06 -0.75 5.93 -103.91 -0.62 -1.37 16 3 C -0.10 -1.01 9.62 -39.78 -0.38 -1.39 16 4 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 5 C -0.06 -0.71 10.06 -39.39 -0.40 -1.11 16 6 C -0.20 -2.82 6.52 -38.63 -0.25 -3.07 16 7 S 0.05 0.66 21.93 -107.50 -2.36 -1.70 16 8 C 0.39 5.97 8.33 -88.92 -0.74 5.23 16 9 N -0.68 -9.71 5.21 -54.80 -0.29 -9.99 16 10 C 0.15 2.40 2.37 -67.89 -0.16 2.23 16 11 C -0.15 -2.49 5.55 -26.61 -0.15 -2.64 16 12 C 0.17 3.84 5.31 -3.71 -0.02 3.82 16 13 N -0.59 -13.97 2.99 -172.31 -0.52 -14.48 16 14 C -0.25 -6.68 9.59 -15.06 -0.14 -6.83 16 15 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 16 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 17 N -0.90 -25.20 11.19 55.49 0.62 -24.58 16 18 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.15 2.92 6.51 -3.71 -0.02 2.89 16 23 C -0.15 -2.43 5.66 -26.61 -0.15 -2.59 16 24 N -0.56 -8.87 10.31 -11.16 -0.12 -8.98 16 25 C 0.14 2.09 6.71 -84.89 -0.57 1.52 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.07 0.83 7.91 -51.93 -0.41 0.42 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.41 5.43 8.72 -40.82 -0.36 5.08 16 33 H 0.08 1.26 7.25 -51.93 -0.38 0.88 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 41 H 0.05 0.85 8.07 -51.92 -0.42 0.43 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -29.12 352.83 -12.16 -41.28 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.06 Total: 2.78 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.73 Total: -5.64 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.30 Total: -58.03 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.36 Total: -1.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.12 -12.16 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892403874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.208 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds