Wall clock time and date at job start Tue Mar 31 2020 11:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37247 * 119.78183 * 2 1 4 4 C 1.38673 * 120.59208 * 179.97438 * 3 2 1 5 5 C 1.37763 * 119.98484 * 0.05049 * 4 3 2 6 6 C 1.39217 * 120.19656 * 359.92669 * 5 4 3 7 7 S 1.76199 * 131.17700 * 180.02562 * 6 5 4 8 8 C 1.75809 * 90.45176 * 179.97438 * 7 6 5 9 9 N 1.38001 * 124.81101 * 179.97438 * 8 7 6 10 10 C 1.46507 * 119.99969 * 0.02932 * 9 8 7 11 11 C 1.53036 * 109.45637 * 204.99501 * 10 9 8 12 12 C 1.53195 * 109.31024 * 178.61463 * 11 10 9 13 13 N 1.46925 * 108.77517 * 54.63748 * 12 11 10 14 14 C 1.36934 * 120.63215 * 126.41523 * 13 12 11 15 15 H 1.08006 * 120.00121 * 207.65629 * 14 13 12 16 16 C 1.38814 * 119.99947 * 27.65531 * 14 13 12 17 17 N 1.31612 * 120.00200 * 17.38313 * 16 14 13 18 18 Si 1.86798 * 119.99944 * 197.37947 * 16 14 13 19 19 H 1.48506 * 109.47458 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47335 * 120.00061 * 18 16 14 21 21 H 1.48504 * 109.47113 * 240.00357 * 18 16 14 22 22 C 1.46931 * 118.73805 * 306.38913 * 13 12 11 23 23 C 1.53037 * 109.45852 * 84.92993 * 10 9 8 24 24 N 1.28885 * 110.37587 * 0.24822 * 8 7 6 25 25 C 1.34822 * 117.87763 * 359.54178 * 24 8 7 26 26 H 1.08994 * 109.47080 * 270.01843 * 1 2 3 27 27 H 1.08998 * 109.47035 * 30.01866 * 1 2 3 28 28 H 1.09001 * 109.47004 * 150.01795 * 1 2 3 29 29 H 1.08002 * 119.70315 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.00667 * 180.02562 * 4 3 2 31 31 H 1.07995 * 119.90314 * 179.97438 * 5 4 3 32 32 H 0.96999 * 120.00262 * 180.02562 * 9 8 7 33 33 H 1.08998 * 109.44540 * 324.96475 * 10 9 8 34 34 H 1.08999 * 109.50418 * 298.56725 * 11 10 9 35 35 H 1.09000 * 109.49813 * 58.66988 * 11 10 9 36 36 H 1.08996 * 109.58732 * 174.42320 * 12 11 10 37 37 H 1.09007 * 109.58748 * 294.84993 * 12 11 10 38 38 H 0.96996 * 120.00390 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.58954 * 293.82227 * 22 13 12 40 40 H 1.08994 * 109.70320 * 173.46363 * 22 13 12 41 41 H 1.09009 * 109.50135 * 301.33722 * 23 10 9 42 42 H 1.09001 * 109.49845 * 61.43160 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.1912 0.0000 4 6 3.5753 1.2108 0.0005 5 6 4.2806 0.0274 0.0000 6 6 3.6055 -1.1901 0.0005 7 16 4.2028 -2.8478 0.0007 8 6 2.5535 -3.4567 0.0021 9 7 2.2070 -4.7925 0.0024 10 6 3.2511 -5.8202 0.0020 11 6 2.6968 -7.1099 -0.6074 12 6 3.8011 -8.1713 -0.6378 13 7 4.3428 -8.3291 0.7187 14 6 4.4022 -9.5642 1.3070 15 1 4.3624 -9.6526 2.3827 16 6 4.5134 -10.7028 0.5208 17 7 4.9015 -10.6017 -0.7328 18 14 4.1125 -12.3787 1.2420 19 1 3.7037 -12.2221 2.6610 20 1 3.0030 -12.9963 0.4721 21 1 5.3126 -13.2501 1.1664 22 6 4.8203 -7.1365 1.4319 23 6 3.7045 -6.0868 1.4392 24 7 1.7141 -2.4788 -0.0028 25 6 2.2077 -1.2242 0.0015 26 1 -0.3633 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6403 2.1216 0.0004 30 1 4.1021 2.1536 0.0009 31 1 5.3604 0.0442 0.0000 32 1 1.2721 -5.0511 0.0028 33 1 4.0998 -5.4750 -0.5884 34 1 1.8636 -7.4691 -0.0033 35 1 2.3526 -6.9139 -1.6229 36 1 3.3867 -9.1201 -0.9784 37 1 4.5950 -7.8533 -1.3137 38 1 4.9796 -11.3973 -1.2821 39 1 5.6972 -6.7342 0.9250 40 1 5.0800 -7.4008 2.4570 41 1 4.0775 -5.1625 1.8805 42 1 2.8618 -6.4555 2.0240 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892403874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:02 Heat of formation + Delta-G solvation = 55.878949 kcal Electronic energy + Delta-G solvation = -23496.842430 eV Core-core repulsion = 20181.558330 eV Total energy + Delta-G solvation = -3315.284099 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19237 -39.92596 -38.07938 -36.24645 -33.99943 -33.67482 -31.98684 -31.34175 -29.90989 -27.67529 -26.81090 -25.18614 -24.00268 -23.70440 -22.42435 -22.35664 -20.95854 -19.09964 -18.78543 -18.03749 -17.26243 -16.83521 -16.40036 -16.11889 -15.93838 -15.56595 -15.38909 -15.34185 -14.87241 -14.73752 -14.25407 -14.17752 -14.03561 -13.44673 -13.26592 -13.19026 -13.06408 -12.92916 -12.66514 -12.57649 -12.41599 -12.21415 -12.05573 -11.90247 -11.71488 -11.60266 -11.42049 -10.81190 -10.66827 -10.61330 -10.53708 -9.02186 -8.73978 -8.62884 -7.90045 -5.34293 -0.29178 0.04458 0.23493 0.70893 1.46240 1.49326 1.52418 1.58920 1.82487 2.50558 2.78725 3.26532 3.47131 3.63005 3.72534 3.78561 3.89582 4.10115 4.16179 4.37091 4.37793 4.38994 4.56918 4.59395 4.69616 4.73829 4.78838 4.83072 4.87561 4.92047 4.98453 5.08790 5.23111 5.26710 5.32028 5.41502 5.43828 5.53060 5.61942 5.63638 5.69321 5.91817 6.30998 6.37517 6.85850 7.12991 7.82566 8.33741 9.17267 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.035810 B = 0.002690 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.726375 B =10406.862513 C =10760.300102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.076 4.076 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.077 4.077 6 C -0.215 4.215 7 S 0.037 5.963 8 C 0.378 3.622 9 N -0.674 5.674 10 C 0.168 3.832 11 C -0.130 4.130 12 C 0.180 3.820 13 N -0.609 5.609 14 C -0.261 4.261 15 H 0.067 0.933 16 C -0.048 4.048 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.290 1.290 21 H -0.293 1.293 22 C 0.146 3.854 23 C -0.133 4.133 24 N -0.574 5.574 25 C 0.102 3.898 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.142 0.858 32 H 0.416 0.584 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.003 0.997 38 H 0.251 0.749 39 H 0.020 0.980 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 23.770 0.793 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.080 4.080 3 C -0.117 4.117 4 C -0.135 4.135 5 C -0.100 4.100 6 C -0.335 4.335 7 S 0.285 5.715 8 C 0.001 3.999 9 N -0.312 5.312 10 C 0.063 3.937 11 C -0.169 4.169 12 C 0.053 3.947 13 N -0.333 5.333 14 C -0.392 4.392 15 H 0.085 0.915 16 C -0.243 4.243 17 N -0.579 5.579 18 Si 0.793 3.207 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.221 1.221 22 C 0.019 3.981 23 C -0.173 4.173 24 N -0.302 5.302 25 C -0.017 4.017 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.159 0.841 32 H 0.256 0.744 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.021 0.979 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.804 22.813 0.690 23.323 hybrid contribution -0.710 -0.971 0.102 1.207 sum -5.514 21.841 0.791 22.540 Atomic orbital electron populations 1.20664 0.89519 1.03073 1.02590 1.19811 0.97169 0.89558 1.01475 1.21221 0.94725 0.97275 0.98467 1.21413 0.94155 0.98072 0.99886 1.20615 1.00559 0.89287 0.99509 1.23700 0.97007 0.97875 1.14890 1.85067 1.07571 0.98391 1.80496 1.23889 0.91506 0.89878 0.94589 1.44304 1.10498 0.98700 1.77692 1.21009 0.88989 0.86681 0.96998 1.22272 0.99894 0.93952 1.00825 1.20565 0.92131 0.96527 0.85438 1.44353 1.70934 1.03004 1.14990 1.19520 1.43910 0.83990 0.91741 0.91517 1.25746 1.00259 1.01314 0.97014 1.70160 1.50292 1.28756 1.08712 0.85254 0.77049 0.80168 0.78237 1.19224 1.21627 1.22062 1.20972 0.93702 0.86913 0.96475 1.22358 0.99937 0.99104 0.95931 1.66235 1.35423 0.98155 1.30351 1.19016 0.89728 0.90776 1.02189 0.90991 0.89168 0.92833 0.81841 0.81566 0.84058 0.74430 0.90863 0.91384 0.90435 0.91822 0.97852 0.94000 0.96239 0.92172 0.91132 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 9.94 71.24 0.71 -1.16 16 2 C -0.08 -1.71 5.93 -19.41 -0.12 -1.82 16 3 C -0.10 -1.53 9.62 22.14 0.21 -1.32 16 4 C -0.11 -1.72 10.05 22.26 0.22 -1.49 16 5 C -0.08 -1.55 10.06 22.39 0.23 -1.33 16 6 C -0.22 -5.78 6.52 22.89 0.15 -5.63 16 7 S 0.04 1.05 21.93 -56.49 -1.24 -0.19 16 8 C 0.38 11.40 8.33 179.75 1.50 12.89 16 9 N -0.67 -19.01 5.21 -327.27 -1.70 -20.71 16 10 C 0.17 5.21 2.37 45.01 0.11 5.32 16 11 C -0.13 -4.45 5.55 30.67 0.17 -4.28 16 12 C 0.18 8.18 5.31 86.36 0.46 8.64 16 13 N -0.61 -29.29 2.99 -699.08 -2.09 -31.38 16 14 C -0.26 -13.94 9.59 84.03 0.81 -13.13 16 15 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 16 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 17 N -0.93 -53.67 11.19 21.65 0.24 -53.43 16 18 Si 0.96 43.90 29.59 68.60 2.03 45.93 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 22 C 0.15 5.77 6.51 86.36 0.56 6.33 16 23 C -0.13 -4.31 5.66 30.67 0.17 -4.14 16 24 N -0.57 -17.96 10.31 -189.23 -1.95 -19.91 16 25 C 0.10 2.93 6.71 39.76 0.27 3.19 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 28 H 0.05 1.19 7.91 -2.39 -0.02 1.17 16 29 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.42 10.77 8.72 -92.71 -0.81 9.96 16 33 H 0.07 2.38 7.25 -2.39 -0.02 2.36 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 3.30 6.04 -2.39 -0.01 3.29 16 37 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 38 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 2.35 7.94 -2.39 -0.02 2.33 16 41 H 0.07 2.10 8.07 -2.38 -0.02 2.08 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -64.52 352.83 1.37 -63.15 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.22 Total: 16.64 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.86 Total: -0.11 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -5.51 Total: -125.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -1.24 Total: -0.19 kcal Total: -64.52 1.37 -63.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892403874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.033 kcal (2) G-P(sol) polarization free energy of solvation -64.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds