Wall clock time and date at job start Tue Mar 31 2020 11:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 120.00218 * 2 1 4 4 H 1.48493 * 109.47605 * 274.69972 * 3 2 1 5 5 H 1.48501 * 109.46929 * 34.70244 * 3 2 1 6 6 H 1.48497 * 109.46921 * 154.69437 * 3 2 1 7 7 C 1.39944 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99751 * 197.72667 * 7 2 1 9 9 C 1.41438 * 120.00187 * 17.72047 * 7 2 1 10 10 C 1.40783 * 120.17389 * 204.35738 * 9 7 2 11 11 C 1.37713 * 120.03443 * 180.02562 * 10 9 7 12 12 C 1.38363 * 120.41497 * 359.97438 * 11 10 9 13 13 C 1.39879 * 120.35825 * 359.97438 * 12 11 10 14 14 C 1.47891 * 120.02180 * 180.02562 * 13 12 11 15 15 O 1.21549 * 119.99301 * 180.02562 * 14 13 12 16 16 N 1.34766 * 120.00451 * 0.02562 * 14 13 12 17 17 C 1.46502 * 120.00253 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.04266 * 34.29768 * 17 16 14 19 19 C 1.54014 * 110.05953 * 272.83827 * 17 16 14 20 20 C 1.54321 * 106.57616 * 240.28653 * 19 17 16 21 21 C 1.54998 * 104.25953 * 23.48770 * 20 19 17 22 22 C 1.53653 * 110.10808 * 155.78665 * 17 16 14 23 23 O 1.43064 * 110.65097 * 337.36791 * 22 17 16 24 24 C 1.44949 * 104.60581 * 213.71921 * 23 22 17 25 25 C 1.54968 * 101.82626 * 35.40684 * 24 23 22 26 26 O 1.42688 * 110.85104 * 215.50923 * 22 17 16 27 27 C 1.39032 * 119.94969 * 0.28139 * 13 12 11 28 28 H 0.97003 * 119.99948 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.98493 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.79113 * 179.97438 * 11 10 9 31 31 H 1.08007 * 119.81925 * 179.97438 * 12 11 10 32 32 H 0.97003 * 120.00232 * 359.97438 * 16 14 13 33 33 H 1.09003 * 110.03720 * 359.56175 * 19 17 16 34 34 H 1.08995 * 110.04017 * 120.95893 * 19 17 16 35 35 H 1.09003 * 110.47341 * 142.18039 * 20 19 17 36 36 H 1.08997 * 110.47219 * 264.66432 * 20 19 17 37 37 H 1.08996 * 110.76374 * 80.98679 * 21 20 19 38 38 H 1.09003 * 110.76237 * 204.18396 * 21 20 19 39 39 H 1.08999 * 110.95885 * 277.26585 * 24 23 22 40 40 H 1.09005 * 110.98517 * 153.55483 * 24 23 22 41 41 H 1.09004 * 110.68692 * 206.42679 * 25 24 23 42 42 H 1.08996 * 110.69159 * 83.22818 * 25 24 23 43 43 H 1.08000 * 120.20100 * 179.70019 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3905 2.1038 -1.3953 5 1 1.4930 2.6219 0.7971 6 1 3.5859 1.4134 0.5985 7 6 2.0079 -1.2120 -0.0005 8 1 3.0494 -1.2343 0.2842 9 6 1.3510 -2.4076 -0.3739 10 6 1.8275 -3.6500 0.0859 11 6 1.1860 -4.8125 -0.2798 12 6 0.0716 -4.7697 -1.0988 13 6 -0.4169 -3.5445 -1.5645 14 6 -1.6089 -3.5073 -2.4390 15 8 -2.0326 -2.4424 -2.8438 16 7 -2.2253 -4.6541 -2.7872 17 6 -3.4065 -4.6172 -3.6530 18 1 -3.3153 -3.8057 -4.3750 19 6 -4.6779 -4.4290 -2.8044 20 6 -5.5674 -5.6630 -3.0643 21 6 -4.5748 -6.7572 -3.5333 22 6 -3.5667 -5.9585 -4.3854 23 8 -2.3160 -6.6499 -4.4513 24 6 -2.3526 -7.3516 -5.7191 25 6 -3.1221 -6.3485 -6.6152 26 8 -4.0748 -5.7597 -5.7038 27 6 0.2223 -2.3621 -1.2089 28 1 -0.4850 0.8401 0.0004 29 1 2.6965 -3.6916 0.7258 30 1 1.5551 -5.7635 0.0749 31 1 -0.4238 -5.6873 -1.3800 32 1 -1.8869 -5.5040 -2.4644 33 1 -4.4167 -4.3728 -1.7477 34 1 -5.1991 -3.5214 -3.1088 35 1 -6.0691 -5.9713 -2.1470 36 1 -6.2981 -5.4488 -3.8441 37 1 -4.0785 -7.2200 -2.6803 38 1 -5.0846 -7.5087 -4.1361 39 1 -2.8974 -8.2914 -5.6289 40 1 -1.3457 -7.5221 -6.1002 41 1 -3.6343 -6.8693 -7.4243 42 1 -2.4474 -5.5893 -7.0107 43 1 -0.1485 -1.4142 -1.5701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898943879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:23 Heat of formation + Delta-G solvation = -106.563420 kcal Electronic energy + Delta-G solvation = -26864.233098 eV Core-core repulsion = 23066.859347 eV Total energy + Delta-G solvation = -3797.373751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12886 -39.07429 -37.21203 -36.35997 -35.28807 -33.75737 -33.02180 -30.22774 -30.02913 -29.39776 -27.84466 -26.46194 -25.21212 -23.57125 -22.53253 -20.98958 -20.94158 -20.23470 -19.49709 -17.91218 -17.36554 -16.89781 -16.14937 -15.82035 -15.48858 -15.23328 -15.00073 -14.56847 -14.26619 -14.11285 -13.98482 -13.65717 -13.14807 -13.03708 -12.75639 -12.71744 -12.46646 -12.45040 -12.11011 -11.65955 -11.56517 -11.45991 -11.24169 -11.13719 -11.04896 -10.73220 -10.63930 -10.46730 -10.39282 -9.97597 -9.77218 -9.64065 -9.18997 -8.96349 -8.57355 -7.58938 -7.48161 -6.76811 -4.38115 2.25585 2.84554 3.02542 3.09834 3.13330 3.18470 3.63211 3.89407 3.93034 3.95130 4.27813 4.38532 4.42756 4.67492 4.69069 4.85089 4.93116 5.19028 5.28069 5.34341 5.42145 5.49322 5.55747 5.58420 5.64850 5.72354 5.77263 5.88399 5.98613 6.12244 6.18752 6.31105 6.34775 6.75449 6.78313 7.01266 7.04612 7.09711 7.25029 7.41987 7.74916 7.80938 7.97041 8.16156 8.24528 8.54506 8.83719 8.87265 9.02015 10.17954 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.003341 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.580639 B = 8377.820016 C = 8807.974437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.099 4.099 12 C -0.215 4.215 13 C -0.126 4.126 14 C 0.566 3.434 15 O -0.547 6.547 16 N -0.718 5.718 17 C 0.143 3.857 18 H 0.099 0.901 19 C -0.133 4.133 20 C -0.118 4.118 21 C -0.142 4.142 22 C 0.247 3.753 23 O -0.358 6.358 24 C 0.016 3.984 25 C 0.018 3.982 26 O -0.366 6.366 27 C -0.093 4.093 28 H 0.284 0.716 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.403 0.597 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 -13.340 -9.355 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.117 4.117 12 C -0.235 4.235 13 C -0.129 4.129 14 C 0.357 3.643 15 O -0.425 6.425 16 N -0.372 5.372 17 C 0.037 3.963 18 H 0.117 0.883 19 C -0.172 4.172 20 C -0.156 4.156 21 C -0.180 4.180 22 C 0.169 3.831 23 O -0.278 6.278 24 C -0.060 4.060 25 C -0.058 4.058 26 O -0.286 6.286 27 C -0.113 4.113 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.240 0.760 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.763 -12.289 -9.523 17.847 hybrid contribution 0.502 0.132 0.036 0.521 sum -8.261 -12.157 -9.487 17.494 Atomic orbital electron populations 1.69796 1.07560 1.29686 1.33735 1.25959 0.94759 1.01507 0.92331 0.86266 0.80457 0.80578 0.79256 1.19237 1.20216 1.18552 1.19598 0.98172 0.91059 1.40193 0.90099 1.17593 0.91225 0.92440 0.89143 1.21097 1.03414 0.92780 1.05846 1.20429 0.96060 0.96703 0.98495 1.20369 1.01135 0.94706 1.07268 1.19455 0.96382 0.95301 1.01785 1.18853 0.83139 0.82785 0.79571 1.90689 1.66468 1.29883 1.55462 1.45752 1.29800 1.10045 1.51621 1.21553 0.86445 0.95679 0.92622 0.88324 1.22616 0.95067 0.98505 1.01047 1.22278 0.97363 0.94513 1.01428 1.23008 0.97114 0.98089 0.99807 1.23969 0.82391 0.91905 0.84866 1.89205 1.36511 1.64048 1.38053 1.24416 1.02815 0.95775 0.83011 1.24294 0.91950 0.95892 0.93672 1.88842 1.44908 1.79911 1.14958 1.21636 0.96459 0.96449 0.96763 0.90490 0.88660 0.88943 0.89144 0.76010 0.90365 0.90575 0.90989 0.91002 0.89298 0.90509 0.90598 0.87235 0.88144 0.90314 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.03 10.95 55.55 0.61 -20.42 16 2 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 19.02 29.59 -169.99 -5.03 13.99 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.28 9.05 -37.73 -0.34 -12.62 16 8 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 9 C 0.10 2.64 5.57 -106.87 -0.60 2.05 16 10 C -0.21 -5.10 9.78 -38.81 -0.38 -5.48 16 11 C -0.10 -2.15 10.01 -39.73 -0.40 -2.55 16 12 C -0.21 -4.66 9.55 -38.92 -0.37 -5.03 16 13 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 14 C 0.57 12.86 7.77 -12.31 -0.10 12.76 16 15 O -0.55 -14.08 16.00 5.32 0.09 -14.00 16 16 N -0.72 -12.88 4.54 -53.89 -0.24 -13.12 16 17 C 0.14 2.27 2.96 -67.06 -0.20 2.07 16 18 H 0.10 1.78 7.51 -51.93 -0.39 1.39 16 19 C -0.13 -1.87 6.60 -25.51 -0.17 -2.04 16 20 C -0.12 -1.27 6.83 -24.98 -0.17 -1.44 16 21 C -0.14 -1.52 6.31 -25.01 -0.16 -1.68 16 22 C 0.25 3.19 1.13 -25.72 -0.03 3.16 16 23 O -0.36 -4.62 9.73 -59.03 -0.57 -5.19 16 24 C 0.02 0.14 7.96 38.20 0.30 0.45 16 25 C 0.02 0.17 8.08 38.20 0.31 0.48 16 26 O -0.37 -4.57 10.91 -59.03 -0.64 -5.22 16 27 C -0.09 -2.53 8.24 -38.44 -0.32 -2.84 16 28 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 29 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.09 1.67 6.38 -52.48 -0.33 1.34 16 32 H 0.40 6.66 5.85 -40.82 -0.24 6.42 16 33 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.13 3.92 5.74 -52.49 -0.30 3.62 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -31.12 352.89 -9.67 -40.80 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.88 Total: 12.45 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -3.31 Total: -14.61 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.36 Total: -33.54 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.13 Total: -24.41 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.12 -9.67 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898943879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.767 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds