Wall clock time and date at job start Tue Mar 31 2020 10:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86797 * 119.99746 * 2 1 4 4 H 1.48499 * 109.47115 * 269.99675 * 3 2 1 5 5 H 1.48503 * 109.47089 * 29.99962 * 3 2 1 6 6 H 1.48504 * 109.46883 * 149.99592 * 3 2 1 7 7 C 1.38690 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00124 * 180.02562 * 7 2 1 9 9 O 1.34815 * 120.00453 * 0.02562 * 7 2 1 10 10 C 1.35513 * 117.00563 * 174.95754 * 9 7 2 11 11 C 1.38841 * 120.16263 * 5.40605 * 10 9 7 12 12 C 1.38022 * 120.07508 * 180.29929 * 11 10 9 13 13 C 1.38571 * 120.40189 * 359.68330 * 12 11 10 14 14 C 1.37835 * 120.32347 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91856 * 0.02562 * 14 13 12 16 16 C 1.47531 * 120.19760 * 179.97438 * 15 14 13 17 17 O 1.21590 * 120.00254 * 215.98717 * 16 15 14 18 18 N 1.34785 * 119.99910 * 35.99378 * 16 15 14 19 19 C 1.47027 * 125.70160 * 175.98867 * 18 16 15 20 20 C 1.54090 * 107.60463 * 182.28554 * 19 18 16 21 21 H 1.08997 * 112.96436 * 258.28328 * 20 19 18 22 22 C 1.53906 * 109.66742 * 131.36407 * 20 19 18 23 23 H 1.09000 * 109.91688 * 152.53549 * 22 20 19 24 24 O 1.42903 * 109.90900 * 31.25831 * 22 20 19 25 25 C 1.54388 * 106.74838 * 272.93151 * 22 20 19 26 26 C 1.54102 * 106.75174 * 359.83524 * 25 22 20 27 27 C 1.54458 * 104.73184 * 337.25516 * 26 25 22 28 28 H 1.09004 * 114.48835 * 271.97335 * 27 26 25 29 29 C 1.47351 * 125.69689 * 355.98637 * 18 16 15 30 30 H 0.96997 * 119.99982 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.95853 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.79931 * 179.69814 * 12 11 10 33 33 H 1.08000 * 119.84231 * 179.97438 * 13 12 11 34 34 H 1.07997 * 120.03967 * 180.02562 * 14 13 12 35 35 H 1.08993 * 109.83048 * 62.76686 * 19 18 16 36 36 H 1.09004 * 109.82774 * 301.79904 * 19 18 16 37 37 H 0.96700 * 113.99997 * 180.02562 * 24 22 20 38 38 H 1.08996 * 109.42740 * 240.80372 * 25 22 20 39 39 H 1.09004 * 110.56995 * 119.48821 * 25 22 20 40 40 H 1.09000 * 110.38764 * 218.44066 * 26 25 22 41 41 H 1.09008 * 110.48508 * 96.11669 * 26 25 22 42 42 H 1.08997 * 110.31458 * 36.24968 * 29 18 16 43 43 H 1.09004 * 110.30866 * 274.07405 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0687 -3.5029 -0.1050 11 6 3.4556 -3.4398 -0.0942 12 6 4.2015 -4.5956 -0.2081 13 6 3.5748 -5.8257 -0.3272 14 6 2.1989 -5.9081 -0.3338 15 6 1.4310 -4.7470 -0.2205 16 6 -0.0421 -4.8279 -0.2275 17 8 -0.6964 -3.9546 -0.7638 18 7 -0.6625 -5.8698 0.3609 19 6 -2.1168 -6.0347 0.5008 20 6 -2.3648 -7.3377 1.2851 21 1 -2.6584 -8.1698 0.6453 22 6 -3.3665 -7.0743 2.4235 23 1 -3.9097 -7.9895 2.6592 24 8 -4.2816 -6.0466 2.0385 25 6 -2.5434 -6.5929 3.6378 26 6 -1.0666 -6.5837 3.1978 27 6 -1.0032 -7.5738 2.0140 28 1 -0.8258 -8.6103 2.3010 29 6 0.0034 -7.0339 0.9713 30 1 -0.4850 0.8400 -0.0004 31 1 3.9514 -2.4848 -0.0018 32 1 5.2801 -4.5409 -0.2040 33 1 4.1672 -6.7243 -0.4162 34 1 1.7152 -6.8692 -0.4265 35 1 -2.5777 -6.1029 -0.4846 36 1 -2.5339 -5.1890 1.0476 37 1 -4.9399 -5.8328 2.7138 38 1 -2.6814 -7.2865 4.4672 39 1 -2.8504 -5.5902 3.9353 40 1 -0.4258 -6.9232 4.0116 41 1 -0.7712 -5.5855 2.8742 42 1 0.9276 -6.7274 1.4611 43 1 0.2082 -7.7920 0.2154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899393541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:11 Heat of formation + Delta-G solvation = -71.460561 kcal Electronic energy + Delta-G solvation = -27288.086342 eV Core-core repulsion = 23492.234765 eV Total energy + Delta-G solvation = -3795.851577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59899 -39.21475 -37.69721 -36.31530 -36.10620 -33.54058 -32.31362 -30.94971 -29.45664 -29.13731 -28.83020 -25.84260 -25.28487 -24.08482 -22.06481 -21.47596 -20.63554 -19.56639 -19.19703 -18.01568 -17.21622 -17.08369 -16.38548 -16.08155 -15.19439 -14.93210 -14.77922 -14.62742 -14.17299 -14.01303 -13.60444 -13.50447 -13.21231 -12.98539 -12.75895 -12.62164 -12.41495 -12.27804 -12.04808 -11.69162 -11.45056 -11.32755 -11.14787 -10.97187 -10.91747 -10.80331 -10.66089 -10.59791 -10.47115 -10.40886 -9.96680 -9.53969 -8.91233 -8.83426 -8.22425 -8.07098 -7.28261 -6.41947 -4.02431 1.81295 2.33321 3.13126 3.15266 3.19187 3.48837 3.70465 3.95694 3.98747 4.23162 4.46342 4.59000 4.69515 5.00117 5.04668 5.09044 5.19278 5.21201 5.26048 5.31712 5.43867 5.47273 5.55342 5.57680 5.74225 5.76001 5.78776 5.83817 5.98084 6.02053 6.09022 6.17724 6.22678 6.32946 6.44237 6.59903 6.66220 6.87239 6.98429 7.09134 7.28042 7.32840 7.58837 7.71803 7.95691 8.14037 8.98241 9.07214 9.69031 10.72824 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.004458 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.505424 B = 6279.517785 C = 7654.707140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.401 4.401 8 H 0.094 0.906 9 O -0.139 6.139 10 C 0.190 3.810 11 C -0.238 4.238 12 C -0.053 4.053 13 C -0.229 4.229 14 C -0.046 4.046 15 C -0.217 4.217 16 C 0.580 3.420 17 O -0.506 6.506 18 N -0.625 5.625 19 C 0.126 3.874 20 C -0.097 4.097 21 H 0.095 0.905 22 C 0.109 3.891 23 H 0.061 0.939 24 O -0.560 6.560 25 C -0.155 4.155 26 C -0.116 4.116 27 C -0.104 4.104 28 H 0.104 0.896 29 C 0.105 3.895 30 H 0.271 0.729 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.376 0.624 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 -16.570 7.071 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.477 4.477 8 H 0.111 0.889 9 O -0.038 6.038 10 C 0.131 3.869 11 C -0.257 4.257 12 C -0.072 4.072 13 C -0.248 4.248 14 C -0.065 4.065 15 C -0.222 4.222 16 C 0.371 3.629 17 O -0.380 6.380 18 N -0.362 5.362 19 C 0.004 3.996 20 C -0.116 4.116 21 H 0.113 0.887 22 C 0.050 3.950 23 H 0.078 0.922 24 O -0.365 6.365 25 C -0.193 4.193 26 C -0.154 4.154 27 C -0.123 4.123 28 H 0.122 0.878 29 C -0.018 4.018 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.223 0.777 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.084 -15.724 6.198 17.030 hybrid contribution 0.258 0.686 0.559 0.922 sum -1.826 -15.038 6.756 16.587 Atomic orbital electron populations 1.70111 1.05987 1.27749 1.43179 1.25376 0.95808 0.98942 0.96225 0.85716 0.78912 0.79972 0.78824 1.19727 1.20177 1.19095 1.21433 0.91827 0.80886 1.53558 0.88863 1.84067 1.33958 1.11186 1.74634 1.19213 0.89907 0.87148 0.90645 1.21128 0.93269 0.99338 1.11947 1.20884 0.98595 0.92327 0.95350 1.20469 0.94000 0.97084 1.13246 1.20994 0.93760 0.95937 0.95793 1.18741 0.91755 0.92167 1.19489 1.17897 0.87410 0.79686 0.77927 1.90874 1.66738 1.37292 1.43093 1.48366 1.06527 1.21449 1.59877 1.21567 0.81241 0.97197 0.99593 1.22957 0.94228 0.98214 0.96180 0.88714 1.22444 0.89584 0.89760 0.93251 0.92155 1.86618 1.46518 1.57559 1.45844 1.22958 0.96439 1.02037 0.97826 1.22238 0.95732 1.00379 0.97036 1.23271 0.94161 0.99554 0.95313 0.87762 1.22360 0.96604 0.88207 0.94640 0.91861 0.85093 0.87224 0.87278 0.86365 0.92280 0.89984 0.77717 0.91604 0.90610 0.91386 0.90314 0.89733 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.78 13.67 55.48 0.76 -25.03 16 2 C 0.04 1.24 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.40 -11.56 9.49 30.90 0.29 -11.27 16 8 H 0.09 2.44 5.21 -52.48 -0.27 2.16 16 9 O -0.14 -4.20 8.42 -16.68 -0.14 -4.34 16 10 C 0.19 4.82 6.63 -38.59 -0.26 4.56 16 11 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 12 C -0.05 -0.95 10.03 -39.54 -0.40 -1.35 16 13 C -0.23 -3.81 10.03 -39.61 -0.40 -4.21 16 14 C -0.05 -0.83 7.89 -39.20 -0.31 -1.13 16 15 C -0.22 -4.90 5.53 -104.81 -0.58 -5.48 16 16 C 0.58 13.68 7.40 -12.47 -0.09 13.58 16 17 O -0.51 -14.65 16.31 -12.21 -0.20 -14.85 16 18 N -0.62 -11.34 2.84 -172.11 -0.49 -11.83 16 19 C 0.13 2.10 5.47 -3.19 -0.02 2.08 16 20 C -0.10 -1.12 3.94 -87.84 -0.35 -1.46 16 21 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 22 C 0.11 1.10 4.03 -25.53 -0.10 1.00 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 O -0.56 -6.55 11.39 -35.23 -0.40 -6.95 16 25 C -0.15 -1.54 6.58 -25.43 -0.17 -1.71 16 26 C -0.12 -1.34 5.85 -25.39 -0.15 -1.49 16 27 C -0.10 -1.09 4.27 -87.24 -0.37 -1.46 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 C 0.11 1.39 4.36 -2.71 -0.01 1.37 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 1.73 5.46 -52.49 -0.29 1.45 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.58 6.67 -51.93 -0.35 1.23 16 37 H 0.38 2.74 9.11 45.56 0.41 3.16 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.83 7.96 -51.93 -0.41 0.41 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.21 7.30 -51.92 -0.38 0.84 16 42 H 0.08 1.15 6.50 -51.93 -0.34 0.81 16 43 H 0.06 0.71 7.27 -51.93 -0.38 0.33 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -36.81 344.01 -8.48 -45.29 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.81 Total: 8.02 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -3.36 Total: -11.37 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.27 Total: -36.85 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.74 Total: -26.14 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.81 -8.48 -45.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899393541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.171 kcal (2) G-P(sol) polarization free energy of solvation -36.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds