Wall clock time and date at job start Tue Mar 31 2020 10:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86797 * 119.99746 * 2 1 4 4 H 1.48499 * 109.47115 * 269.99675 * 3 2 1 5 5 H 1.48503 * 109.47089 * 29.99962 * 3 2 1 6 6 H 1.48504 * 109.46883 * 149.99592 * 3 2 1 7 7 C 1.38690 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00124 * 180.02562 * 7 2 1 9 9 O 1.34815 * 120.00453 * 0.02562 * 7 2 1 10 10 C 1.35513 * 117.00563 * 174.95754 * 9 7 2 11 11 C 1.38841 * 120.16263 * 5.40605 * 10 9 7 12 12 C 1.38022 * 120.07508 * 180.29929 * 11 10 9 13 13 C 1.38571 * 120.40189 * 359.68330 * 12 11 10 14 14 C 1.37835 * 120.32347 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91856 * 0.02562 * 14 13 12 16 16 C 1.47531 * 120.19760 * 179.97438 * 15 14 13 17 17 O 1.21590 * 120.00254 * 215.98717 * 16 15 14 18 18 N 1.34785 * 119.99910 * 35.99378 * 16 15 14 19 19 C 1.47027 * 125.70160 * 175.98867 * 18 16 15 20 20 C 1.54090 * 107.60463 * 182.28554 * 19 18 16 21 21 H 1.08997 * 112.96436 * 258.28328 * 20 19 18 22 22 C 1.53906 * 109.66742 * 131.36407 * 20 19 18 23 23 H 1.09000 * 109.91688 * 152.53549 * 22 20 19 24 24 O 1.42903 * 109.90900 * 31.25831 * 22 20 19 25 25 C 1.54388 * 106.74838 * 272.93151 * 22 20 19 26 26 C 1.54102 * 106.75174 * 359.83524 * 25 22 20 27 27 C 1.54458 * 104.73184 * 337.25516 * 26 25 22 28 28 H 1.09004 * 114.48835 * 271.97335 * 27 26 25 29 29 C 1.47351 * 125.69689 * 355.98637 * 18 16 15 30 30 H 0.96997 * 119.99982 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.95853 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.79931 * 179.69814 * 12 11 10 33 33 H 1.08000 * 119.84231 * 179.97438 * 13 12 11 34 34 H 1.07997 * 120.03967 * 180.02562 * 14 13 12 35 35 H 1.08993 * 109.83048 * 62.76686 * 19 18 16 36 36 H 1.09004 * 109.82774 * 301.79904 * 19 18 16 37 37 H 0.96700 * 113.99997 * 180.02562 * 24 22 20 38 38 H 1.08996 * 109.42740 * 240.80372 * 25 22 20 39 39 H 1.09004 * 110.56995 * 119.48821 * 25 22 20 40 40 H 1.09000 * 110.38764 * 218.44066 * 26 25 22 41 41 H 1.09008 * 110.48508 * 96.11669 * 26 25 22 42 42 H 1.08997 * 110.31458 * 36.24968 * 29 18 16 43 43 H 1.09004 * 110.30866 * 274.07405 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0687 -3.5029 -0.1050 11 6 3.4556 -3.4398 -0.0942 12 6 4.2015 -4.5956 -0.2081 13 6 3.5748 -5.8257 -0.3272 14 6 2.1989 -5.9081 -0.3338 15 6 1.4310 -4.7470 -0.2205 16 6 -0.0421 -4.8279 -0.2275 17 8 -0.6964 -3.9546 -0.7638 18 7 -0.6625 -5.8698 0.3609 19 6 -2.1168 -6.0347 0.5008 20 6 -2.3648 -7.3377 1.2851 21 1 -2.6584 -8.1698 0.6453 22 6 -3.3665 -7.0743 2.4235 23 1 -3.9097 -7.9895 2.6592 24 8 -4.2816 -6.0466 2.0385 25 6 -2.5434 -6.5929 3.6378 26 6 -1.0666 -6.5837 3.1978 27 6 -1.0032 -7.5738 2.0140 28 1 -0.8258 -8.6103 2.3010 29 6 0.0034 -7.0339 0.9713 30 1 -0.4850 0.8400 -0.0004 31 1 3.9514 -2.4848 -0.0018 32 1 5.2801 -4.5409 -0.2040 33 1 4.1672 -6.7243 -0.4162 34 1 1.7152 -6.8692 -0.4265 35 1 -2.5777 -6.1029 -0.4846 36 1 -2.5339 -5.1890 1.0476 37 1 -4.9399 -5.8328 2.7138 38 1 -2.6814 -7.2865 4.4672 39 1 -2.8504 -5.5902 3.9353 40 1 -0.4258 -6.9232 4.0116 41 1 -0.7712 -5.5855 2.8742 42 1 0.9276 -6.7274 1.4611 43 1 0.2082 -7.7920 0.2154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899393541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:10 Heat of formation + Delta-G solvation = -99.633089 kcal Electronic energy + Delta-G solvation = -27289.307994 eV Core-core repulsion = 23492.234765 eV Total energy + Delta-G solvation = -3797.073230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87552 -40.80325 -39.35143 -38.06905 -37.26557 -34.78175 -34.35887 -32.45334 -30.67584 -30.61288 -30.13321 -27.49023 -26.78049 -25.46822 -23.53836 -23.12704 -21.54711 -20.82275 -20.55640 -19.90685 -18.76564 -18.15750 -17.89717 -17.26349 -16.82122 -16.43092 -16.36128 -15.97179 -15.67384 -15.48426 -15.46407 -14.96002 -14.51911 -14.42709 -14.16296 -13.87430 -13.74328 -13.61361 -13.52923 -13.18566 -13.03082 -12.67169 -12.56253 -12.50358 -12.40343 -12.14744 -11.81108 -11.77501 -11.64077 -11.46994 -11.32172 -10.86894 -10.79411 -10.70531 -9.85212 -9.59624 -9.05241 -8.48440 -6.20150 0.17049 0.69413 1.29358 1.41943 1.49381 1.86101 2.11302 2.14075 2.81741 3.10173 3.15835 3.30335 3.43111 3.57439 3.74748 3.94700 4.06593 4.15432 4.22617 4.26034 4.26140 4.28202 4.47260 4.53275 4.55757 4.61111 4.61835 4.72725 4.85508 4.90381 4.96918 4.98040 5.04784 5.10159 5.12155 5.13735 5.30145 5.39876 5.47843 5.52280 5.61001 5.67956 5.93532 6.15836 6.55639 6.91309 6.93975 7.31907 7.76012 8.73409 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.004458 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.505424 B = 6279.517785 C = 7654.707140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.026 4.026 3 Si 1.026 2.974 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.244 1.244 7 C -0.424 4.424 8 H 0.109 0.891 9 O -0.207 6.207 10 C 0.145 3.855 11 C -0.254 4.254 12 C -0.042 4.042 13 C -0.194 4.194 14 C -0.037 4.037 15 C -0.234 4.234 16 C 0.566 3.434 17 O -0.585 6.585 18 N -0.617 5.617 19 C 0.122 3.878 20 C -0.090 4.090 21 H 0.126 0.874 22 C 0.107 3.893 23 H 0.101 0.899 24 O -0.591 6.591 25 C -0.152 4.152 26 C -0.123 4.123 27 C -0.082 4.082 28 H 0.160 0.840 29 C 0.091 3.909 30 H 0.271 0.729 31 H 0.124 0.876 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.392 0.608 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.022 0.978 42 H 0.082 0.918 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -21.910 8.208 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.224 4.224 3 Si 0.844 3.156 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.500 4.500 8 H 0.126 0.874 9 O -0.111 6.111 10 C 0.091 3.909 11 C -0.273 4.273 12 C -0.060 4.060 13 C -0.212 4.212 14 C -0.056 4.056 15 C -0.239 4.239 16 C 0.358 3.642 17 O -0.465 6.465 18 N -0.351 5.351 19 C -0.001 4.001 20 C -0.108 4.108 21 H 0.143 0.857 22 C 0.049 3.951 23 H 0.119 0.881 24 O -0.400 6.400 25 C -0.190 4.190 26 C -0.161 4.161 27 C -0.100 4.100 28 H 0.177 0.823 29 C -0.030 4.030 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.175 0.825 33 H 0.186 0.814 34 H 0.177 0.823 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.242 0.758 38 H 0.119 0.881 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.041 0.959 42 H 0.101 0.899 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.022 -21.194 7.381 22.466 hybrid contribution -0.566 1.904 0.211 1.997 sum 0.456 -19.290 7.592 20.735 Atomic orbital electron populations 1.70322 1.08560 1.28667 1.47480 1.26840 0.96762 1.03339 0.95507 0.84516 0.77935 0.73864 0.79327 1.18800 1.19639 1.16703 1.22021 0.92712 0.81510 1.53724 0.87367 1.84070 1.35824 1.12526 1.78684 1.20013 0.91820 0.87132 0.91890 1.21285 0.91981 1.01116 1.12893 1.21442 1.00775 0.91147 0.92611 1.21202 0.93568 0.98579 1.07839 1.21480 0.94504 0.95627 0.93945 1.19140 0.91727 0.93141 1.19871 1.18349 0.88210 0.79978 0.77707 1.90820 1.68283 1.40488 1.46957 1.48378 1.07684 1.21325 1.57748 1.21644 0.80195 0.99241 0.99017 1.23089 0.95801 0.95568 0.96387 0.85651 1.22662 0.89398 0.90792 0.92288 0.88093 1.86590 1.47473 1.58605 1.47317 1.22960 0.95152 1.01783 0.99056 1.22248 0.97315 0.97967 0.98537 1.23399 0.91901 1.01550 0.93176 0.82262 1.22834 0.97091 0.86777 0.96325 0.92031 0.85816 0.82548 0.81416 0.82303 0.94148 0.94140 0.75842 0.88072 0.92979 0.89149 0.95941 0.89942 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -62.10 13.67 21.62 0.30 -61.80 16 2 C -0.03 -1.62 5.49 84.85 0.47 -1.15 16 3 Si 1.03 45.62 29.55 68.60 2.03 47.65 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.24 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.42 -26.54 9.49 67.93 0.64 -25.90 16 8 H 0.11 6.04 5.21 -2.91 -0.02 6.02 16 9 O -0.21 -13.80 8.42 -3.25 -0.03 -13.83 16 10 C 0.15 7.86 6.63 22.91 0.15 8.01 16 11 C -0.25 -11.16 9.16 22.36 0.20 -10.95 16 12 C -0.04 -1.32 10.03 22.30 0.22 -1.10 16 13 C -0.19 -5.28 10.03 22.25 0.22 -5.06 16 14 C -0.04 -1.21 7.89 22.52 0.18 -1.03 16 15 C -0.23 -10.93 5.53 -19.99 -0.11 -11.04 16 16 C 0.57 28.82 7.40 86.69 0.64 29.46 16 17 O -0.59 -37.94 16.31 12.73 0.21 -37.73 16 18 N -0.62 -23.25 2.84 -816.68 -2.32 -25.57 16 19 C 0.12 4.29 5.47 86.65 0.47 4.76 16 20 C -0.09 -1.85 3.94 -8.99 -0.04 -1.88 16 21 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 22 C 0.11 1.93 4.03 31.37 0.13 2.05 16 23 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 24 O -0.59 -14.18 11.39 -148.98 -1.70 -15.88 16 25 C -0.15 -2.77 6.58 31.44 0.21 -2.56 16 26 C -0.12 -2.67 5.85 31.46 0.18 -2.48 16 27 C -0.08 -1.37 4.27 -8.61 -0.04 -1.41 16 28 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 29 C 0.09 2.12 4.36 86.78 0.38 2.50 16 30 H 0.27 16.83 8.31 -92.71 -0.77 16.06 16 31 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 32 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.16 3.79 5.46 -2.91 -0.02 3.78 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.75 6.67 -2.38 -0.02 1.74 16 37 H 0.39 5.90 9.11 -74.06 -0.67 5.23 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.19 7.96 -2.39 -0.02 1.17 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.02 0.73 7.30 -2.38 -0.02 0.71 16 42 H 0.08 1.99 6.50 -2.39 -0.02 1.98 16 43 H 0.10 1.68 7.27 -2.38 -0.02 1.66 16 Total: -1.00 -99.68 344.01 2.79 -96.89 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.38 Total: 28.04 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 3.92 Total: -17.77 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -2.02 Total: -87.37 kcal Atomic # 8 Polarization: -65.92 SS G_CDS: -1.52 Total: -67.44 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -99.68 2.79 -96.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899393541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.744 kcal (2) G-P(sol) polarization free energy of solvation -99.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds