Wall clock time and date at job start Tue Mar 31 2020 11:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 119.99369 * 2 1 4 4 H 1.48503 * 109.47374 * 269.99877 * 3 2 1 5 5 H 1.48499 * 109.47372 * 30.00202 * 3 2 1 6 6 H 1.48504 * 109.47040 * 150.00265 * 3 2 1 7 7 C 1.39931 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99987 * 162.64226 * 7 2 1 9 9 C 1.41440 * 120.00071 * 342.64424 * 7 2 1 10 10 C 1.40791 * 120.17600 * 154.91721 * 9 7 2 11 11 C 1.37714 * 120.03826 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.41024 * 359.74641 * 11 10 9 13 13 C 1.39876 * 120.35875 * 0.51294 * 12 11 10 14 14 C 1.47892 * 120.02441 * 179.76551 * 13 12 11 15 15 O 1.21549 * 119.99966 * 179.72146 * 14 13 12 16 16 N 1.34774 * 119.99849 * 359.72542 * 14 13 12 17 17 C 1.46505 * 119.99748 * 180.02562 * 16 14 13 18 18 H 1.09000 * 110.05141 * 326.41153 * 17 16 14 19 19 C 1.53868 * 110.03258 * 87.82950 * 17 16 14 20 20 C 1.54474 * 106.68400 * 119.44661 * 19 17 16 21 21 C 1.54883 * 104.10098 * 23.33950 * 20 19 17 22 22 H 1.09002 * 110.75897 * 80.70940 * 21 20 19 23 23 C 1.53002 * 110.75922 * 203.89981 * 21 20 19 24 24 C 1.50700 * 109.46596 * 291.06599 * 23 21 20 25 25 O 1.20830 * 120.00311 * 359.97438 * 24 23 21 26 26 O 1.34226 * 119.99961 * 180.27394 * 24 23 21 27 27 C 1.54265 * 110.03005 * 204.99774 * 17 16 14 28 28 C 1.39031 * 119.95117 * 359.48617 * 13 12 11 29 29 H 0.97001 * 120.00387 * 359.97438 * 1 2 3 30 30 H 1.07994 * 119.98402 * 0.02562 * 10 9 7 31 31 H 1.07994 * 119.79065 * 180.02562 * 11 10 9 32 32 H 1.08005 * 119.81966 * 180.27962 * 12 11 10 33 33 H 0.96993 * 120.00010 * 359.97438 * 16 14 13 34 34 H 1.09000 * 110.03022 * 238.56783 * 19 17 16 35 35 H 1.08994 * 110.03732 * 0.02562 * 19 17 16 36 36 H 1.09003 * 110.39625 * 264.75436 * 20 19 17 37 37 H 1.09003 * 110.66161 * 142.05210 * 20 19 17 38 38 H 1.08991 * 109.47206 * 171.06373 * 23 21 20 39 39 H 1.09004 * 109.47118 * 51.06054 * 23 21 20 40 40 H 0.96700 * 117.00279 * 179.72618 * 26 24 23 41 41 H 1.09003 * 110.48617 * 98.42784 * 27 17 16 42 42 H 1.09000 * 110.59845 * 335.83848 * 27 17 16 43 43 H 1.08002 * 120.20612 * 180.23023 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0466 -1.4001 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0511 -1.2332 -0.2785 9 6 1.3492 -2.4087 0.3665 10 6 1.8192 -3.6485 -0.1071 11 6 1.1759 -4.8122 0.2514 12 6 0.0692 -4.7736 1.0813 13 6 -0.4153 -3.5508 1.5571 14 6 -1.6018 -3.5178 2.4394 15 8 -2.0194 -2.4554 2.8568 16 7 -2.2198 -4.6659 2.7808 17 6 -3.3954 -4.6331 3.6544 18 1 -3.3029 -3.8207 4.3752 19 6 -4.6714 -4.4497 2.8143 20 6 -5.5547 -5.6903 3.0730 21 6 -5.0729 -6.2167 4.4476 22 1 -5.5230 -5.6454 5.2595 23 6 -5.3856 -7.7069 4.5976 24 6 -6.8762 -7.8984 4.7092 25 8 -7.6128 -6.9413 4.6730 26 8 -7.3853 -9.1318 4.8549 27 6 -3.5432 -5.9799 4.3921 28 6 0.2226 -2.3669 1.2047 29 1 -0.4851 0.8400 0.0004 30 1 2.6852 -3.6871 -0.7511 31 1 1.5401 -5.7610 -0.1137 32 1 -0.4253 -5.6925 1.3600 33 1 -1.8866 -5.5136 2.4475 34 1 -5.1982 -3.5484 3.1275 35 1 -4.4161 -4.3855 1.7566 36 1 -5.3923 -6.4404 2.2989 37 1 -6.6071 -5.4102 3.1193 38 1 -4.9016 -8.0911 5.4954 39 1 -5.0144 -8.2456 3.7258 40 1 -8.3470 -9.2043 4.9264 41 1 -3.1311 -5.9106 5.3989 42 1 -3.0534 -6.7783 3.8346 43 1 -0.1458 -1.4207 1.5728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908365177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:37 Heat of formation + Delta-G solvation = -130.710936 kcal Electronic energy + Delta-G solvation = -25531.309215 eV Core-core repulsion = 21732.888349 eV Total energy + Delta-G solvation = -3798.420866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70156 -39.54738 -38.04399 -36.86713 -36.34560 -33.90898 -33.57090 -31.30893 -29.99400 -29.42807 -28.41198 -26.20248 -25.23119 -22.66292 -22.15178 -20.99315 -20.35267 -20.10183 -19.29365 -18.35029 -17.71792 -17.06473 -16.34883 -16.12810 -15.91221 -15.30055 -15.10978 -14.68778 -14.12681 -14.00753 -13.67452 -13.51960 -13.29253 -13.21280 -12.77566 -12.56458 -12.46860 -11.91193 -11.80398 -11.70411 -11.60926 -11.31109 -11.14678 -11.08817 -11.06015 -10.88562 -10.74305 -10.72816 -10.51261 -10.46487 -10.02036 -9.69053 -9.21032 -8.98844 -8.62180 -7.62639 -7.51680 -6.79585 -4.41299 1.89673 2.21817 2.69776 2.81485 3.08042 3.10862 3.16401 3.70687 3.86729 3.92652 4.23702 4.40041 4.63420 4.67362 4.82872 5.02069 5.12514 5.19815 5.33843 5.45550 5.50065 5.55878 5.60764 5.70088 5.74614 5.76646 6.03203 6.06339 6.18390 6.20805 6.26290 6.29804 6.33367 6.71983 6.94226 6.99905 7.03847 7.21484 7.38299 7.56557 7.70315 7.76484 7.92841 8.11334 8.20141 8.50893 8.80573 8.83672 8.98405 10.15196 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027074 B = 0.002438 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.940830 B =11481.293308 C =12191.044675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.563 3.437 15 O -0.545 6.545 16 N -0.731 5.731 17 C 0.144 3.856 18 H 0.090 0.910 19 C -0.136 4.136 20 C -0.118 4.118 21 C -0.082 4.082 22 H 0.089 0.911 23 C -0.106 4.106 24 C 0.476 3.524 25 O -0.510 6.510 26 O -0.522 6.522 27 C -0.123 4.123 28 C -0.093 4.093 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.409 0.591 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 -14.951 8.031 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.117 4.117 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.354 3.646 15 O -0.423 6.423 16 N -0.385 5.385 17 C 0.039 3.961 18 H 0.108 0.892 19 C -0.175 4.175 20 C -0.156 4.156 21 C -0.101 4.101 22 H 0.108 0.892 23 C -0.144 4.144 24 C 0.319 3.681 25 O -0.398 6.398 26 O -0.334 6.334 27 C -0.161 4.161 28 C -0.113 4.113 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.233 0.767 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.267 0.733 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.536 -13.697 8.282 19.163 hybrid contribution -0.237 0.189 -0.261 0.400 sum -10.773 -13.509 8.021 19.049 Atomic orbital electron populations 1.69788 1.07568 1.29781 1.33647 1.25964 0.94776 1.01546 0.92335 0.86291 0.80615 0.80538 0.79209 1.19449 1.19952 1.18386 1.19572 0.98012 0.91008 1.40293 0.90108 1.17609 0.91219 0.92467 0.89119 1.21101 1.03473 0.92832 1.05749 1.20435 0.96140 0.96707 0.98393 1.20332 1.01437 0.94631 1.07395 1.19489 0.96593 0.95283 1.01747 1.18861 0.83099 0.82971 0.79658 1.90694 1.66546 1.30107 1.54982 1.46108 1.30801 1.09698 1.51870 1.21445 0.85107 0.97618 0.91980 0.89228 1.22637 0.95588 0.98093 1.01140 1.22504 1.00229 0.97524 0.95350 1.21968 0.95687 0.92656 0.99787 0.89234 1.21437 0.87878 0.99189 1.05859 1.23620 0.92765 0.79999 0.71738 1.90738 1.61763 1.41623 1.45643 1.84546 1.30751 1.33173 1.84908 1.22675 0.94994 0.97252 1.01201 1.21637 0.96438 0.96461 0.96746 0.90437 0.88644 0.88939 0.89268 0.76681 0.91233 0.90940 0.91874 0.90643 0.87472 0.87401 0.73252 0.90582 0.90555 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.85 10.97 55.55 0.61 -20.24 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.83 29.59 -169.99 -5.03 13.79 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.09 9.05 -37.73 -0.34 -12.43 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.10 2.60 5.57 -106.87 -0.59 2.01 16 10 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 11 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 12 C -0.22 -4.50 9.55 -38.92 -0.37 -4.87 16 13 C -0.13 -2.99 5.87 -105.04 -0.62 -3.61 16 14 C 0.56 12.16 7.77 -12.31 -0.10 12.07 16 15 O -0.55 -13.61 15.99 5.32 0.09 -13.53 16 16 N -0.73 -11.66 4.93 -53.65 -0.26 -11.93 16 17 C 0.14 1.94 3.25 -66.81 -0.22 1.72 16 18 H 0.09 1.38 7.56 -51.93 -0.39 0.99 16 19 C -0.14 -1.79 6.60 -25.51 -0.17 -1.96 16 20 C -0.12 -1.24 5.69 -24.96 -0.14 -1.38 16 21 C -0.08 -0.71 2.46 -88.63 -0.22 -0.93 16 22 H 0.09 0.85 7.97 -51.93 -0.41 0.44 16 23 C -0.11 -0.69 5.31 -27.88 -0.15 -0.84 16 24 C 0.48 3.92 8.14 36.01 0.29 4.22 16 25 O -0.51 -5.89 15.44 -18.75 -0.29 -6.18 16 26 O -0.52 -3.22 13.42 -39.25 -0.53 -3.74 16 27 C -0.12 -1.13 5.98 -25.07 -0.15 -1.28 16 28 C -0.09 -2.47 8.23 -38.44 -0.32 -2.79 16 29 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 30 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 31 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.09 1.50 6.38 -52.48 -0.33 1.16 16 33 H 0.40 5.41 6.38 -40.82 -0.26 5.15 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 36 H 0.06 0.61 7.98 -51.93 -0.41 0.20 16 37 H 0.07 0.87 7.21 -51.93 -0.37 0.49 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.57 8.05 -51.93 -0.42 0.15 16 40 H 0.41 0.97 9.10 45.56 0.41 1.39 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.60 7.65 -51.93 -0.40 0.21 16 43 H 0.13 3.85 5.77 -52.49 -0.30 3.55 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -32.50 358.76 -8.93 -41.43 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -4.97 Total: 11.18 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -3.95 Total: -16.19 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.34 Total: -32.17 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.73 Total: -23.45 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.50 -8.93 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908365177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.284 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds