Wall clock time and date at job start Tue Mar 31 2020 11:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 119.99369 * 2 1 4 4 H 1.48503 * 109.47374 * 269.99877 * 3 2 1 5 5 H 1.48499 * 109.47372 * 30.00202 * 3 2 1 6 6 H 1.48504 * 109.47040 * 150.00265 * 3 2 1 7 7 C 1.39931 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99987 * 162.64226 * 7 2 1 9 9 C 1.41440 * 120.00071 * 342.64424 * 7 2 1 10 10 C 1.40791 * 120.17600 * 154.91721 * 9 7 2 11 11 C 1.37714 * 120.03826 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.41024 * 359.74641 * 11 10 9 13 13 C 1.39876 * 120.35875 * 0.51294 * 12 11 10 14 14 C 1.47892 * 120.02441 * 179.76551 * 13 12 11 15 15 O 1.21549 * 119.99966 * 179.72146 * 14 13 12 16 16 N 1.34774 * 119.99849 * 359.72542 * 14 13 12 17 17 C 1.46505 * 119.99748 * 180.02562 * 16 14 13 18 18 H 1.09000 * 110.05141 * 326.41153 * 17 16 14 19 19 C 1.53868 * 110.03258 * 87.82950 * 17 16 14 20 20 C 1.54474 * 106.68400 * 119.44661 * 19 17 16 21 21 C 1.54883 * 104.10098 * 23.33950 * 20 19 17 22 22 H 1.09002 * 110.75897 * 80.70940 * 21 20 19 23 23 C 1.53002 * 110.75922 * 203.89981 * 21 20 19 24 24 C 1.50700 * 109.46596 * 291.06599 * 23 21 20 25 25 O 1.20830 * 120.00311 * 359.97438 * 24 23 21 26 26 O 1.34226 * 119.99961 * 180.27394 * 24 23 21 27 27 C 1.54265 * 110.03005 * 204.99774 * 17 16 14 28 28 C 1.39031 * 119.95117 * 359.48617 * 13 12 11 29 29 H 0.97001 * 120.00387 * 359.97438 * 1 2 3 30 30 H 1.07994 * 119.98402 * 0.02562 * 10 9 7 31 31 H 1.07994 * 119.79065 * 180.02562 * 11 10 9 32 32 H 1.08005 * 119.81966 * 180.27962 * 12 11 10 33 33 H 0.96993 * 120.00010 * 359.97438 * 16 14 13 34 34 H 1.09000 * 110.03022 * 238.56783 * 19 17 16 35 35 H 1.08994 * 110.03732 * 0.02562 * 19 17 16 36 36 H 1.09003 * 110.39625 * 264.75436 * 20 19 17 37 37 H 1.09003 * 110.66161 * 142.05210 * 20 19 17 38 38 H 1.08991 * 109.47206 * 171.06373 * 23 21 20 39 39 H 1.09004 * 109.47118 * 51.06054 * 23 21 20 40 40 H 0.96700 * 117.00279 * 179.72618 * 26 24 23 41 41 H 1.09003 * 110.48617 * 98.42784 * 27 17 16 42 42 H 1.09000 * 110.59845 * 335.83848 * 27 17 16 43 43 H 1.08002 * 120.20612 * 180.23023 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0466 -1.4001 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0511 -1.2332 -0.2785 9 6 1.3492 -2.4087 0.3665 10 6 1.8192 -3.6485 -0.1071 11 6 1.1759 -4.8122 0.2514 12 6 0.0692 -4.7736 1.0813 13 6 -0.4153 -3.5508 1.5571 14 6 -1.6018 -3.5178 2.4394 15 8 -2.0194 -2.4554 2.8568 16 7 -2.2198 -4.6659 2.7808 17 6 -3.3954 -4.6331 3.6544 18 1 -3.3029 -3.8207 4.3752 19 6 -4.6714 -4.4497 2.8143 20 6 -5.5547 -5.6903 3.0730 21 6 -5.0729 -6.2167 4.4476 22 1 -5.5230 -5.6454 5.2595 23 6 -5.3856 -7.7069 4.5976 24 6 -6.8762 -7.8984 4.7092 25 8 -7.6128 -6.9413 4.6730 26 8 -7.3853 -9.1318 4.8549 27 6 -3.5432 -5.9799 4.3921 28 6 0.2226 -2.3669 1.2047 29 1 -0.4851 0.8400 0.0004 30 1 2.6852 -3.6871 -0.7511 31 1 1.5401 -5.7610 -0.1137 32 1 -0.4253 -5.6925 1.3600 33 1 -1.8866 -5.5136 2.4475 34 1 -5.1982 -3.5484 3.1275 35 1 -4.4161 -4.3855 1.7566 36 1 -5.3923 -6.4404 2.2989 37 1 -6.6071 -5.4102 3.1193 38 1 -4.9016 -8.0911 5.4954 39 1 -5.0144 -8.2456 3.7258 40 1 -8.3470 -9.2043 4.9264 41 1 -3.1311 -5.9106 5.3989 42 1 -3.0534 -6.7783 3.8346 43 1 -0.1458 -1.4207 1.5728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908365177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:37 Heat of formation + Delta-G solvation = -151.976697 kcal Electronic energy + Delta-G solvation = -25532.231368 eV Core-core repulsion = 21732.888349 eV Total energy + Delta-G solvation = -3799.343019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41559 -40.94575 -39.31905 -38.46855 -36.99930 -35.65113 -34.99090 -32.49903 -31.51207 -31.22715 -29.36013 -27.38184 -26.87229 -24.28741 -22.85945 -22.75957 -21.44923 -21.32987 -20.51257 -19.48477 -18.91376 -17.98897 -17.72299 -17.19039 -16.88761 -16.75333 -16.44542 -16.31289 -15.60997 -15.50028 -15.03916 -14.75327 -14.53902 -14.30292 -14.19637 -13.93532 -13.48543 -13.31858 -12.97652 -12.82995 -12.75896 -12.70298 -12.52891 -12.43466 -12.20536 -12.12439 -11.94311 -11.81828 -11.70235 -11.51486 -11.48668 -11.33930 -11.06534 -10.73887 -10.07934 -9.45013 -9.36748 -8.66249 -6.37889 0.40125 1.01873 1.32203 1.35495 1.46038 1.51864 2.11490 2.16637 2.19208 2.37552 2.79897 3.46582 3.60247 3.72022 3.87284 4.05498 4.18794 4.28640 4.38613 4.43631 4.50858 4.52954 4.58633 4.63385 4.77963 4.80363 4.89463 4.92616 5.00841 5.09222 5.12135 5.16317 5.21473 5.29915 5.32566 5.43950 5.52839 5.65679 5.73346 5.88477 5.94078 6.06491 6.30196 6.53980 6.73622 6.88504 6.95867 7.08179 7.37305 8.30486 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027074 B = 0.002438 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.940830 B =11481.293308 C =12191.044675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.028 3.972 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.498 4.498 8 H 0.084 0.916 9 C 0.065 3.935 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.194 4.194 13 C -0.139 4.139 14 C 0.559 3.441 15 O -0.592 6.592 16 N -0.704 5.704 17 C 0.136 3.864 18 H 0.063 0.937 19 C -0.136 4.136 20 C -0.110 4.110 21 C -0.075 4.075 22 H 0.077 0.923 23 C -0.101 4.101 24 C 0.479 3.521 25 O -0.553 6.553 26 O -0.517 6.517 27 C -0.108 4.108 28 C -0.134 4.134 29 H 0.285 0.715 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.414 0.586 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.424 0.576 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 -19.029 8.420 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.063 3.937 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.213 4.213 13 C -0.142 4.142 14 C 0.349 3.651 15 O -0.474 6.474 16 N -0.357 5.357 17 C 0.032 3.968 18 H 0.082 0.918 19 C -0.175 4.175 20 C -0.147 4.147 21 C -0.094 4.094 22 H 0.096 0.904 23 C -0.138 4.138 24 C 0.323 3.677 25 O -0.444 6.444 26 O -0.331 6.331 27 C -0.146 4.146 28 C -0.154 4.154 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.253 0.747 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.286 0.714 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.057 -17.872 8.673 22.266 hybrid contribution -0.493 1.211 -0.356 1.355 sum -10.550 -16.660 8.317 21.402 Atomic orbital electron populations 1.69897 1.09263 1.30509 1.35665 1.26862 0.95405 1.05005 0.91397 0.85210 0.79096 0.75792 0.79694 1.18126 1.19874 1.17758 1.19848 0.98383 0.92179 1.42324 0.89798 1.17961 0.91851 0.93996 0.89894 1.21424 1.03873 0.92866 1.05446 1.20949 0.95434 0.97676 0.97363 1.20884 1.00461 0.95165 1.04811 1.19811 0.97004 0.95536 1.01876 1.18780 0.83046 0.83817 0.79490 1.90673 1.67739 1.32215 1.56730 1.45885 1.30441 1.08529 1.50808 1.21667 0.83847 0.99937 0.91372 0.91848 1.22584 0.96081 0.99090 0.99759 1.22430 0.98682 0.96368 0.97250 1.21849 0.95033 0.94509 0.97990 0.90447 1.21466 0.86882 0.97258 1.08238 1.23966 0.93371 0.79830 0.70528 1.90742 1.62909 1.42953 1.47786 1.84509 1.32350 1.31978 1.84249 1.22625 0.95548 0.94789 1.01647 1.21441 0.98363 0.96476 0.99132 0.90429 0.87386 0.84161 0.84129 0.74747 0.93187 0.92804 0.90169 0.92028 0.84707 0.85097 0.71443 0.89059 0.87735 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.11 10.97 21.82 0.24 -46.87 16 2 C 0.03 1.48 5.14 85.25 0.44 1.92 16 3 Si 0.98 40.28 29.59 68.60 2.03 42.31 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.50 -27.40 9.05 23.47 0.21 -27.19 16 8 H 0.08 4.34 7.90 -2.91 -0.02 4.32 16 9 C 0.07 3.57 5.57 -21.32 -0.12 3.45 16 10 C -0.22 -10.05 9.78 22.77 0.22 -9.82 16 11 C -0.10 -3.72 10.01 22.18 0.22 -3.49 16 12 C -0.19 -7.34 9.55 22.70 0.22 -7.13 16 13 C -0.14 -6.53 5.87 -20.13 -0.12 -6.65 16 14 C 0.56 24.46 7.77 86.80 0.67 25.13 16 15 O -0.59 -31.28 15.99 -3.87 -0.06 -31.35 16 16 N -0.70 -21.22 4.93 -441.93 -2.18 -23.40 16 17 C 0.14 3.55 3.25 45.71 0.15 3.69 16 18 H 0.06 2.01 7.56 -2.39 -0.02 2.00 16 19 C -0.14 -3.63 6.60 31.39 0.21 -3.42 16 20 C -0.11 -2.13 5.69 31.74 0.18 -1.95 16 21 C -0.07 -1.09 2.46 -9.50 -0.02 -1.12 16 22 H 0.08 1.35 7.97 -2.39 -0.02 1.34 16 23 C -0.10 -0.88 5.31 29.85 0.16 -0.72 16 24 C 0.48 6.57 8.14 71.24 0.58 7.15 16 25 O -0.55 -12.12 15.44 21.95 0.34 -11.78 16 26 O -0.52 -4.78 13.42 -51.37 -0.69 -5.47 16 27 C -0.11 -1.59 5.98 31.67 0.19 -1.40 16 28 C -0.13 -7.49 8.23 23.01 0.19 -7.30 16 29 H 0.29 15.02 8.30 -92.71 -0.77 14.25 16 30 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 31 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 32 H 0.14 3.84 6.38 -2.91 -0.02 3.82 16 33 H 0.41 9.50 6.38 -92.71 -0.59 8.91 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.62 7.92 -2.39 -0.02 1.60 16 36 H 0.08 1.30 7.98 -2.39 -0.02 1.28 16 37 H 0.06 1.40 7.21 -2.39 -0.02 1.38 16 38 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.13 0.63 8.05 -2.39 -0.02 0.61 16 40 H 0.42 0.98 9.10 -74.06 -0.67 0.31 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.10 1.02 7.65 -2.39 -0.02 1.00 16 43 H 0.10 6.02 5.77 -2.91 -0.02 6.01 16 Total: -1.00 -78.49 358.76 2.85 -75.64 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -0.21 Total: 29.77 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 3.38 Total: -28.85 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.94 Total: -70.27 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.41 Total: -48.60 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -78.49 2.85 -75.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908365177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.332 kcal (2) G-P(sol) polarization free energy of solvation -78.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds