Wall clock time and date at job start Tue Mar 31 2020 11:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53782 * 113.61455 * 2 1 4 4 C 1.54059 * 86.98008 * 270.83508 * 3 2 1 5 5 C 1.53006 * 113.69433 * 220.01208 * 4 3 2 6 6 O 1.45195 * 109.47037 * 272.53388 * 5 4 3 7 7 C 1.34751 * 117.00067 * 180.02562 * 6 5 4 8 8 O 1.21507 * 119.99845 * 359.97438 * 7 6 5 9 9 C 1.47463 * 120.00042 * 179.97438 * 7 6 5 10 10 C 1.39847 * 120.06734 * 359.72393 * 9 7 6 11 11 C 1.37607 * 119.93000 * 179.80798 * 10 9 7 12 12 C 1.39273 * 120.06768 * 0.44432 * 11 10 9 13 13 N 1.39070 * 119.93342 * 179.76010 * 12 11 10 14 14 C 1.34773 * 120.00422 * 213.67136 * 13 12 11 15 15 O 1.21720 * 119.99940 * 5.27253 * 14 13 12 16 16 C 1.46199 * 119.99970 * 185.28355 * 14 13 12 17 17 H 1.07996 * 120.00018 * 359.97438 * 16 14 13 18 18 C 1.40129 * 119.99975 * 179.97438 * 16 14 13 19 19 N 1.30639 * 119.99962 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00002 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47437 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47019 * 120.00155 * 20 18 16 23 23 H 1.48500 * 109.47196 * 239.99964 * 20 18 16 24 24 C 1.39278 * 120.13760 * 359.78541 * 12 11 10 25 25 C 1.37607 * 120.06240 * 0.02562 * 24 12 11 26 26 C 1.53778 * 113.61686 * 262.38633 * 2 1 3 27 27 H 1.08996 * 109.47076 * 159.14270 * 1 2 3 28 28 H 1.09002 * 109.47064 * 39.14242 * 1 2 3 29 29 H 1.09005 * 109.47471 * 279.14530 * 1 2 3 30 30 H 1.09006 * 112.84690 * 131.18819 * 2 1 3 31 31 H 1.08989 * 113.61561 * 25.42345 * 3 2 1 32 32 H 1.08996 * 113.61406 * 156.33965 * 3 2 1 33 33 H 1.08994 * 113.61144 * 89.11422 * 4 3 2 34 34 H 1.09004 * 109.46784 * 32.53072 * 5 4 3 35 35 H 1.08997 * 109.47131 * 152.52885 * 5 4 3 36 36 H 1.07997 * 120.03279 * 0.02780 * 10 9 7 37 37 H 1.07998 * 119.96795 * 180.20544 * 11 10 9 38 38 H 0.97007 * 119.99336 * 33.66846 * 13 12 11 39 39 H 0.96989 * 120.00201 * 179.97438 * 19 18 16 40 40 H 1.07998 * 119.96698 * 179.97438 * 24 12 11 41 41 H 1.08007 * 120.03214 * 179.97438 * 25 24 12 42 42 H 1.08999 * 113.61396 * 203.66737 * 26 2 1 43 43 H 1.09000 * 113.61413 * 334.48127 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0929 1.3437 -1.5383 5 6 3.3256 1.9390 -2.2219 6 8 3.1306 3.3647 -2.4150 7 6 4.1312 4.0440 -3.0094 8 8 5.1392 3.4609 -3.3563 9 6 4.0028 5.4950 -3.2388 10 6 2.8409 6.1665 -2.8453 11 6 2.7258 7.5213 -3.0571 12 6 3.7610 8.2221 -3.6711 13 7 3.6396 9.5903 -3.8883 14 6 4.1975 10.1516 -4.9792 15 8 4.7244 9.4499 -5.8227 16 6 4.1701 11.6034 -5.1493 17 1 3.7024 12.2260 -4.4010 18 6 4.7506 12.1871 -6.2832 19 7 5.3168 11.4340 -7.1882 20 14 4.7150 14.0420 -6.5009 21 1 4.0209 14.6629 -5.3443 22 1 6.1053 14.5581 -6.5785 23 1 3.9911 14.3797 -7.7527 24 6 4.9174 7.5553 -4.0685 25 6 5.0400 6.2013 -3.8558 26 6 2.1460 -0.1867 -1.3966 27 1 -0.3633 -0.9603 -0.3659 28 1 -0.3633 0.7970 -0.6487 29 1 -0.3634 0.1633 1.0146 30 1 1.9532 -0.6615 0.7560 31 1 1.4945 2.1704 0.4287 32 1 3.1590 1.4427 0.4008 33 1 1.1569 1.7110 -1.9588 34 1 4.2031 1.7736 -1.5967 35 1 3.4726 1.4580 -3.1889 36 1 2.0364 5.6230 -2.3724 37 1 1.8301 8.0411 -2.7504 38 1 3.1532 10.1407 -3.2546 39 1 5.7184 11.8379 -7.9732 40 1 5.7183 8.1013 -4.5447 41 1 5.9369 5.6847 -4.1645 42 1 3.1591 -0.5885 -1.3767 43 1 1.4952 -0.7140 -2.0940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908711835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:17 Heat of formation + Delta-G solvation = -91.546007 kcal Electronic energy + Delta-G solvation = -24931.319715 eV Core-core repulsion = 21134.597167 eV Total energy + Delta-G solvation = -3796.722547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.46608 -39.58274 -38.99681 -36.99824 -36.10380 -33.65577 -32.58737 -31.03413 -30.50737 -29.52517 -27.20527 -26.41321 -26.01930 -23.60422 -22.53351 -22.08387 -20.87204 -19.89119 -18.93190 -17.88474 -17.43130 -17.05029 -16.39921 -16.27741 -15.60587 -15.44140 -15.16525 -14.50738 -14.20482 -14.01749 -13.97305 -13.42971 -13.30668 -13.15349 -12.77967 -12.72751 -12.70265 -12.52670 -12.08925 -12.02352 -11.82943 -11.51572 -11.35854 -11.18717 -10.96242 -10.80764 -10.75255 -10.68903 -10.61475 -10.38556 -10.32910 -10.14795 -9.50471 -9.01326 -8.62424 -7.90202 -7.31211 -6.45376 -4.93412 1.15542 1.86405 2.75714 2.87545 3.01430 3.09286 3.13625 3.90348 4.12739 4.16754 4.24124 4.33972 4.39682 4.42537 4.46215 4.87748 5.02940 5.04727 5.12530 5.22664 5.33044 5.34158 5.35230 5.38032 5.46297 5.49119 5.52037 5.58266 5.73031 5.77448 5.80251 5.92769 5.98784 6.07829 6.14831 6.41376 6.45292 6.62382 6.85314 6.89735 7.16097 7.21152 7.57950 7.87109 7.99543 8.02271 8.74383 9.03769 10.24100 10.44809 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038326 B = 0.002031 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.397157 B =13781.455803 C =14276.287151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C -0.132 4.132 4 C -0.110 4.110 5 C 0.077 3.923 6 O -0.354 6.354 7 C 0.516 3.484 8 O -0.522 6.522 9 C -0.188 4.188 10 C -0.035 4.035 11 C -0.196 4.196 12 C 0.236 3.764 13 N -0.694 5.694 14 C 0.538 3.462 15 O -0.555 6.555 16 C -0.535 4.535 17 H 0.074 0.926 18 C 0.085 3.915 19 N -0.756 5.756 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.147 4.147 25 C -0.029 4.029 26 C -0.128 4.128 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.397 0.603 39 H 0.273 0.727 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 -16.529 13.353 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.169 4.169 4 C -0.128 4.128 5 C 0.003 3.997 6 O -0.272 6.272 7 C 0.364 3.636 8 O -0.413 6.413 9 C -0.190 4.190 10 C -0.054 4.054 11 C -0.217 4.217 12 C 0.134 3.866 13 N -0.336 5.336 14 C 0.345 3.655 15 O -0.436 6.436 16 C -0.571 4.571 17 H 0.093 0.907 18 C -0.137 4.137 19 N -0.383 5.383 20 Si 0.739 3.261 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.168 4.168 25 C -0.048 4.048 26 C -0.166 4.166 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.231 0.769 39 H 0.084 0.916 40 H 0.165 0.835 41 H 0.148 0.852 42 H 0.102 0.898 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.303 -17.109 12.412 22.363 hybrid contribution -0.188 1.054 0.076 1.073 sum -7.491 -16.056 12.488 21.676 Atomic orbital electron populations 1.21609 0.93753 1.01980 1.01989 1.22288 0.95989 0.97768 0.97435 1.23126 1.01464 0.96960 0.95338 1.22666 0.98319 0.95736 0.96125 1.23046 0.98258 0.77559 1.00830 1.86552 1.44709 1.23147 1.72750 1.21270 0.80338 0.88333 0.73701 1.90796 1.30567 1.70489 1.49400 1.18797 0.98922 0.88923 1.12380 1.21022 0.95694 0.93613 0.95095 1.20858 0.98572 0.94161 1.08147 1.18295 0.91663 0.85827 0.90812 1.44311 1.57513 1.04489 1.27247 1.18481 0.78575 0.89525 0.78933 1.90659 1.47381 1.63474 1.42081 1.20909 1.39196 0.89544 1.07426 0.90742 1.25772 0.93043 1.00140 0.94728 1.69980 1.24776 1.36542 1.07052 0.86190 0.78701 0.82157 0.79075 1.18575 1.19906 1.19927 1.21299 0.98303 0.93984 1.03225 1.21051 0.97080 0.93517 0.93174 1.22997 1.01605 0.94640 0.97329 0.92391 0.92265 0.92368 0.90523 0.90916 0.89972 0.87955 0.91293 0.91302 0.85218 0.85612 0.76907 0.91579 0.83497 0.85175 0.89801 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.59 37.16 0.36 -0.44 16 2 C -0.12 -0.75 4.54 -89.81 -0.41 -1.16 16 3 C -0.13 -1.00 7.22 -25.77 -0.19 -1.19 16 4 C -0.11 -0.93 3.67 -89.66 -0.33 -1.25 16 5 C 0.08 0.85 5.32 37.16 0.20 1.05 16 6 O -0.35 -4.89 9.46 -40.63 -0.38 -5.28 16 7 C 0.52 8.51 7.89 34.49 0.27 8.78 16 8 O -0.52 -9.69 16.13 -19.27 -0.31 -10.00 16 9 C -0.19 -3.19 5.88 -104.94 -0.62 -3.80 16 10 C -0.04 -0.54 9.60 -39.21 -0.38 -0.91 16 11 C -0.20 -3.17 9.94 -39.43 -0.39 -3.56 16 12 C 0.24 4.68 6.27 -83.81 -0.53 4.15 16 13 N -0.69 -14.67 5.30 -11.18 -0.06 -14.73 16 14 C 0.54 14.26 7.46 -13.07 -0.10 14.16 16 15 O -0.55 -16.71 12.69 5.17 0.07 -16.64 16 16 C -0.54 -14.02 9.54 -35.68 -0.34 -14.36 16 17 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 18 C 0.08 2.22 5.50 -17.35 -0.10 2.12 16 19 N -0.76 -21.34 11.83 55.55 0.66 -20.68 16 20 Si 0.91 18.89 29.56 -169.99 -5.02 13.86 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.15 -3.05 8.62 -39.43 -0.34 -3.39 16 25 C -0.03 -0.54 9.58 -39.22 -0.38 -0.91 16 26 C -0.13 -0.87 7.23 -25.92 -0.19 -1.06 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.36 7.33 -51.93 -0.38 -0.02 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.56 8.10 -51.94 -0.42 0.14 16 32 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 33 H 0.10 0.87 7.64 -51.93 -0.40 0.47 16 34 H 0.07 0.75 7.85 -51.93 -0.41 0.35 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.13 1.63 7.60 -52.49 -0.40 1.23 16 37 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.40 7.00 8.79 -40.82 -0.36 6.64 16 39 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 40 H 0.15 3.45 6.41 -52.49 -0.34 3.11 16 41 H 0.13 2.31 7.64 -52.48 -0.40 1.91 16 42 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 43 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -32.28 366.37 -8.99 -41.27 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.01 Total: 8.46 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.44 Total: -1.78 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.60 Total: -35.41 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.63 Total: -31.92 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.28 -8.99 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908711835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.278 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds