Wall clock time and date at job start Tue Mar 31 2020 11:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53782 * 113.61455 * 2 1 4 4 C 1.54059 * 86.98008 * 270.83508 * 3 2 1 5 5 C 1.53006 * 113.69433 * 220.01208 * 4 3 2 6 6 O 1.45195 * 109.47037 * 272.53388 * 5 4 3 7 7 C 1.34751 * 117.00067 * 180.02562 * 6 5 4 8 8 O 1.21507 * 119.99845 * 359.97438 * 7 6 5 9 9 C 1.47463 * 120.00042 * 179.97438 * 7 6 5 10 10 C 1.39847 * 120.06734 * 359.72393 * 9 7 6 11 11 C 1.37607 * 119.93000 * 179.80798 * 10 9 7 12 12 C 1.39273 * 120.06768 * 0.44432 * 11 10 9 13 13 N 1.39070 * 119.93342 * 179.76010 * 12 11 10 14 14 C 1.34773 * 120.00422 * 213.67136 * 13 12 11 15 15 O 1.21720 * 119.99940 * 5.27253 * 14 13 12 16 16 C 1.46199 * 119.99970 * 185.28355 * 14 13 12 17 17 H 1.07996 * 120.00018 * 359.97438 * 16 14 13 18 18 C 1.40129 * 119.99975 * 179.97438 * 16 14 13 19 19 N 1.30639 * 119.99962 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00002 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47437 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47019 * 120.00155 * 20 18 16 23 23 H 1.48500 * 109.47196 * 239.99964 * 20 18 16 24 24 C 1.39278 * 120.13760 * 359.78541 * 12 11 10 25 25 C 1.37607 * 120.06240 * 0.02562 * 24 12 11 26 26 C 1.53778 * 113.61686 * 262.38633 * 2 1 3 27 27 H 1.08996 * 109.47076 * 159.14270 * 1 2 3 28 28 H 1.09002 * 109.47064 * 39.14242 * 1 2 3 29 29 H 1.09005 * 109.47471 * 279.14530 * 1 2 3 30 30 H 1.09006 * 112.84690 * 131.18819 * 2 1 3 31 31 H 1.08989 * 113.61561 * 25.42345 * 3 2 1 32 32 H 1.08996 * 113.61406 * 156.33965 * 3 2 1 33 33 H 1.08994 * 113.61144 * 89.11422 * 4 3 2 34 34 H 1.09004 * 109.46784 * 32.53072 * 5 4 3 35 35 H 1.08997 * 109.47131 * 152.52885 * 5 4 3 36 36 H 1.07997 * 120.03279 * 0.02780 * 10 9 7 37 37 H 1.07998 * 119.96795 * 180.20544 * 11 10 9 38 38 H 0.97007 * 119.99336 * 33.66846 * 13 12 11 39 39 H 0.96989 * 120.00201 * 179.97438 * 19 18 16 40 40 H 1.07998 * 119.96698 * 179.97438 * 24 12 11 41 41 H 1.08007 * 120.03214 * 179.97438 * 25 24 12 42 42 H 1.08999 * 113.61396 * 203.66737 * 26 2 1 43 43 H 1.09000 * 113.61413 * 334.48127 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0929 1.3437 -1.5383 5 6 3.3256 1.9390 -2.2219 6 8 3.1306 3.3647 -2.4150 7 6 4.1312 4.0440 -3.0094 8 8 5.1392 3.4609 -3.3563 9 6 4.0028 5.4950 -3.2388 10 6 2.8409 6.1665 -2.8453 11 6 2.7258 7.5213 -3.0571 12 6 3.7610 8.2221 -3.6711 13 7 3.6396 9.5903 -3.8883 14 6 4.1975 10.1516 -4.9792 15 8 4.7244 9.4499 -5.8227 16 6 4.1701 11.6034 -5.1493 17 1 3.7024 12.2260 -4.4010 18 6 4.7506 12.1871 -6.2832 19 7 5.3168 11.4340 -7.1882 20 14 4.7150 14.0420 -6.5009 21 1 4.0209 14.6629 -5.3443 22 1 6.1053 14.5581 -6.5785 23 1 3.9911 14.3797 -7.7527 24 6 4.9174 7.5553 -4.0685 25 6 5.0400 6.2013 -3.8558 26 6 2.1460 -0.1867 -1.3966 27 1 -0.3633 -0.9603 -0.3659 28 1 -0.3633 0.7970 -0.6487 29 1 -0.3634 0.1633 1.0146 30 1 1.9532 -0.6615 0.7560 31 1 1.4945 2.1704 0.4287 32 1 3.1590 1.4427 0.4008 33 1 1.1569 1.7110 -1.9588 34 1 4.2031 1.7736 -1.5967 35 1 3.4726 1.4580 -3.1889 36 1 2.0364 5.6230 -2.3724 37 1 1.8301 8.0411 -2.7504 38 1 3.1532 10.1407 -3.2546 39 1 5.7184 11.8379 -7.9732 40 1 5.7183 8.1013 -4.5447 41 1 5.9369 5.6847 -4.1645 42 1 3.1591 -0.5885 -1.3767 43 1 1.4952 -0.7140 -2.0940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908711835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:16 Heat of formation + Delta-G solvation = -109.747618 kcal Electronic energy + Delta-G solvation = -24932.108996 eV Core-core repulsion = 21134.597167 eV Total energy + Delta-G solvation = -3797.511828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69094 -40.79728 -40.09082 -38.68346 -37.36530 -35.43106 -34.58411 -32.10838 -31.71464 -30.91141 -28.57056 -27.70940 -26.58302 -25.02216 -23.92209 -22.92673 -22.35583 -21.52016 -19.63766 -19.51022 -18.83850 -18.28945 -17.83742 -17.55719 -17.45133 -16.33240 -16.14268 -15.82949 -15.71640 -15.42200 -14.88311 -14.78378 -14.64540 -14.30823 -14.23734 -14.15396 -13.54489 -13.53652 -13.27161 -13.13805 -13.10655 -12.83327 -12.77763 -12.72373 -12.22940 -12.16857 -11.99667 -11.82154 -11.55963 -11.45831 -11.19097 -11.08865 -10.93329 -10.90775 -10.13255 -9.85755 -8.95755 -8.40391 -6.98275 -0.28014 0.44475 1.36963 1.40695 1.50854 1.58722 1.59974 2.19266 2.34639 2.77391 2.87989 3.52650 3.53218 3.60571 3.67219 3.78884 3.86060 3.95274 4.01660 4.25077 4.29258 4.36169 4.41592 4.51040 4.62224 4.64948 4.78739 4.82818 4.84600 4.99459 5.01928 5.09141 5.13053 5.18866 5.23840 5.27707 5.33177 5.37882 5.41609 5.44755 5.61908 5.67003 5.76603 6.12200 6.23667 6.71044 6.75052 7.25134 8.28602 8.53022 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038326 B = 0.002031 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.397157 B =13781.455803 C =14276.287151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C -0.134 4.134 4 C -0.110 4.110 5 C 0.072 3.928 6 O -0.346 6.346 7 C 0.521 3.479 8 O -0.547 6.547 9 C -0.186 4.186 10 C -0.019 4.019 11 C -0.175 4.175 12 C 0.209 3.791 13 N -0.686 5.686 14 C 0.526 3.474 15 O -0.604 6.604 16 C -0.560 4.560 17 H 0.098 0.902 18 C 0.028 3.972 19 N -0.812 5.812 20 Si 1.002 2.998 21 H -0.243 1.243 22 H -0.270 1.270 23 H -0.269 1.269 24 C -0.169 4.169 25 C -0.035 4.035 26 C -0.125 4.125 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.414 0.586 39 H 0.278 0.722 40 H 0.106 0.894 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 -16.747 15.374 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.171 4.171 4 C -0.128 4.128 5 C -0.002 4.002 6 O -0.262 6.262 7 C 0.369 3.631 8 O -0.440 6.440 9 C -0.189 4.189 10 C -0.037 4.037 11 C -0.196 4.196 12 C 0.109 3.891 13 N -0.329 5.329 14 C 0.333 3.667 15 O -0.489 6.489 16 C -0.595 4.595 17 H 0.116 0.884 18 C -0.188 4.188 19 N -0.441 5.441 20 Si 0.821 3.179 21 H -0.166 1.166 22 H -0.195 1.195 23 H -0.194 1.194 24 C -0.191 4.191 25 C -0.054 4.054 26 C -0.162 4.162 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.187 0.813 37 H 0.181 0.819 38 H 0.251 0.749 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.105 0.895 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.893 -17.360 14.503 24.690 hybrid contribution 0.576 0.905 -0.456 1.166 sum -9.317 -16.455 14.046 23.556 Atomic orbital electron populations 1.21622 0.93191 1.02260 1.02279 1.22278 0.96401 0.96988 0.97289 1.23157 1.01569 0.97855 0.94546 1.22728 0.96969 0.96729 0.96371 1.23360 0.99883 0.75831 1.01107 1.86535 1.43301 1.24677 1.71730 1.21127 0.80402 0.88125 0.73413 1.90791 1.31732 1.70970 1.50492 1.18959 0.98936 0.89561 1.11398 1.21418 0.95590 0.93239 0.93470 1.21178 0.98274 0.94395 1.05768 1.18526 0.92627 0.85357 0.92635 1.43785 1.57289 1.05418 1.26449 1.18811 0.78232 0.90041 0.79614 1.90624 1.49436 1.64562 1.44260 1.21467 1.39645 0.89972 1.08449 0.88420 1.27036 0.91795 1.06110 0.93903 1.70144 1.26310 1.39515 1.08112 0.84898 0.78921 0.74500 0.79600 1.16564 1.19504 1.19382 1.21031 0.98398 0.94887 1.04756 1.20984 0.97921 0.92735 0.93768 1.23020 1.02092 0.93305 0.97779 0.91725 0.92582 0.91921 0.89818 0.90874 0.90158 0.87706 0.91270 0.91553 0.81259 0.81876 0.74914 0.91166 0.87550 0.85500 0.89503 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.59 71.98 0.69 -0.56 16 2 C -0.11 -1.16 4.54 -10.27 -0.05 -1.21 16 3 C -0.13 -1.75 7.22 31.22 0.23 -1.52 16 4 C -0.11 -1.60 3.67 -10.17 -0.04 -1.64 16 5 C 0.07 1.46 5.32 71.98 0.38 1.85 16 6 O -0.35 -8.79 9.46 -56.62 -0.54 -9.32 16 7 C 0.52 16.56 7.89 70.25 0.55 17.11 16 8 O -0.55 -20.22 16.13 19.81 0.32 -19.90 16 9 C -0.19 -6.12 5.88 -20.07 -0.12 -6.24 16 10 C -0.02 -0.51 9.60 22.51 0.22 -0.29 16 11 C -0.18 -5.20 9.94 22.37 0.22 -4.98 16 12 C 0.21 8.31 6.27 38.49 0.24 8.55 16 13 N -0.69 -29.31 5.30 -307.51 -1.63 -30.94 16 14 C 0.53 28.89 7.46 86.31 0.64 29.54 16 15 O -0.60 -38.54 12.69 -4.41 -0.06 -38.59 16 16 C -0.56 -29.71 9.54 24.80 0.24 -29.47 16 17 H 0.10 4.53 7.85 -2.91 -0.02 4.51 16 18 C 0.03 1.49 5.50 85.33 0.47 1.96 16 19 N -0.81 -47.69 11.83 21.85 0.26 -47.43 16 20 Si 1.00 38.66 29.56 68.60 2.03 40.69 16 21 H -0.24 -8.53 7.11 99.48 0.71 -7.82 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 C -0.17 -7.43 8.62 22.37 0.19 -7.24 16 25 C -0.03 -1.34 9.58 22.51 0.22 -1.13 16 26 C -0.12 -1.41 7.23 31.12 0.23 -1.18 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.55 7.33 -2.39 -0.02 0.53 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.08 1.08 7.91 -2.39 -0.02 1.06 16 33 H 0.10 1.51 7.64 -2.39 -0.02 1.49 16 34 H 0.07 1.42 7.85 -2.39 -0.02 1.40 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.17 3.37 7.60 -2.91 -0.02 3.35 16 37 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.41 14.26 8.79 -92.70 -0.81 13.44 16 39 H 0.28 14.77 8.29 -92.72 -0.77 14.00 16 40 H 0.11 5.51 6.41 -2.91 -0.02 5.49 16 41 H 0.13 4.81 7.64 -2.91 -0.02 4.79 16 42 H 0.09 0.94 8.10 -2.39 -0.02 0.92 16 43 H 0.08 0.81 8.10 -2.39 -0.02 0.79 16 Total: -1.00 -74.02 366.37 4.92 -69.10 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.22 Total: 32.84 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 4.31 Total: 3.55 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.37 Total: -78.37 kcal Atomic # 8 Polarization: -67.54 SS G_CDS: -0.27 Total: -67.82 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -74.02 4.92 -69.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908711835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.648 kcal (2) G-P(sol) polarization free energy of solvation -74.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds