Wall clock time and date at job start Tue Mar 31 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99618 * 2 1 4 4 C 1.53004 * 109.46954 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46952 * 64.99738 * 4 3 2 6 6 C 1.35722 * 120.00338 * 264.50280 * 5 4 3 7 7 H 1.07998 * 119.99746 * 144.58741 * 6 5 4 8 8 C 1.39964 * 119.99921 * 324.59875 * 6 5 4 9 9 N 1.30795 * 119.99779 * 338.96533 * 8 6 5 10 10 Si 1.86798 * 120.00090 * 158.97367 * 8 6 5 11 11 H 1.48501 * 109.47475 * 89.99349 * 10 8 6 12 12 H 1.48503 * 109.46896 * 209.99620 * 10 8 6 13 13 H 1.48498 * 109.46982 * 329.99564 * 10 8 6 14 14 C 1.34775 * 119.99812 * 84.51014 * 5 4 3 15 15 O 1.21719 * 120.00061 * 359.97438 * 14 5 4 16 16 C 1.46823 * 119.99980 * 179.97438 * 14 5 4 17 17 C 1.35122 * 119.99892 * 179.97438 * 16 14 5 18 18 C 1.46842 * 119.99695 * 180.02562 * 17 16 14 19 19 O 1.21675 * 120.00198 * 359.97438 * 18 17 16 20 20 C 1.47755 * 119.99553 * 180.02562 * 18 17 16 21 21 C 1.39721 * 120.15400 * 179.97438 * 20 18 17 22 22 C 1.37907 * 119.84379 * 180.02562 * 21 20 18 23 23 C 1.38407 * 120.15544 * 0.26479 * 22 21 20 24 24 C 1.50701 * 119.84309 * 179.74289 * 23 22 21 25 25 C 1.38413 * 120.31140 * 359.47967 * 23 22 21 26 26 C 1.37903 * 120.15818 * 0.51557 * 25 23 22 27 27 H 1.08998 * 109.47636 * 300.00282 * 1 2 3 28 28 H 1.09006 * 109.46655 * 60.00133 * 1 2 3 29 29 H 1.08998 * 109.46798 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47393 * 59.99963 * 3 2 1 31 31 H 1.09000 * 109.47099 * 299.99600 * 3 2 1 32 32 H 1.09001 * 109.47036 * 304.99763 * 4 3 2 33 33 H 1.09002 * 109.47511 * 184.99924 * 4 3 2 34 34 H 0.97003 * 120.00297 * 180.02562 * 9 8 6 35 35 H 1.07996 * 119.99982 * 359.97438 * 16 14 5 36 36 H 1.07996 * 120.00126 * 0.02562 * 17 16 14 37 37 H 1.08001 * 120.07980 * 0.02562 * 21 20 18 38 38 H 1.07998 * 119.92312 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47065 * 89.99354 * 24 23 22 40 40 H 1.08996 * 109.46802 * 209.99648 * 24 23 22 41 41 H 1.08997 * 109.46852 * 329.99710 * 24 23 22 42 42 H 1.08001 * 119.91783 * 180.24208 * 25 23 22 43 43 H 1.08001 * 120.08116 * 179.72502 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2042 -0.7730 -1.3019 7 1 3.9693 -1.3268 -2.1989 8 6 4.7430 -1.4341 -0.1921 9 7 5.4002 -0.7593 0.7154 10 14 4.5239 -3.2799 -0.0073 11 1 5.6569 -3.9811 -0.6630 12 1 4.4915 -3.6325 1.4349 13 1 3.2491 -3.6935 -0.6468 14 6 4.1567 1.3207 -2.3515 15 8 3.9523 2.5198 -2.3058 16 6 4.5994 0.6988 -3.6056 17 6 4.7794 1.4574 -4.7092 18 6 5.2217 0.8352 -5.9636 19 8 5.4264 -0.3634 -6.0092 20 6 5.4190 1.6648 -7.1702 21 6 5.8403 1.0763 -8.3654 22 6 6.0230 1.8568 -9.4876 23 6 5.7954 3.2208 -9.4304 24 6 6.0028 4.0679 -10.6594 25 6 5.3729 3.8097 -8.2512 26 6 5.1860 3.0415 -7.1213 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5687 0.8427 33 1 3.9785 2.1767 0.0902 34 1 5.7740 -1.2175 1.4844 35 1 4.7812 -0.3650 -3.6460 36 1 4.5981 2.5212 -4.6687 37 1 6.0224 0.0127 -8.4104 38 1 6.3490 1.4033 -10.4120 39 1 5.0731 4.1199 -11.2261 40 1 6.3037 5.0724 -10.3618 41 1 6.7818 3.6240 -11.2794 42 1 5.1935 4.8741 -8.2148 43 1 4.8606 3.5030 -6.2007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909563138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:52 Heat of formation + Delta-G solvation = -66.439375 kcal Electronic energy + Delta-G solvation = -25537.900527 eV Core-core repulsion = 21742.266685 eV Total energy + Delta-G solvation = -3795.633842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.88791 -38.84187 -38.10692 -36.98602 -34.92539 -33.06790 -32.19208 -31.81237 -30.98353 -29.42126 -27.82384 -25.92567 -25.09012 -24.28145 -22.67104 -22.41686 -21.10497 -19.45416 -18.64524 -17.52767 -16.63813 -16.15039 -15.67299 -15.47687 -15.33737 -15.13756 -14.61640 -14.49970 -14.32899 -14.25025 -13.97547 -13.76660 -13.73900 -13.56312 -13.26764 -12.79284 -12.41342 -12.09461 -11.98078 -11.73088 -11.69523 -11.56080 -11.27345 -11.21264 -11.04948 -10.96780 -10.67047 -10.42080 -10.10669 -9.52745 -9.27902 -9.05775 -9.04222 -8.99498 -8.73503 -8.59377 -7.69249 -6.52441 -4.05424 0.58260 1.33354 1.56997 3.05036 3.17151 3.21301 3.28660 3.87575 4.01849 4.21330 4.34331 4.46551 4.65320 4.70280 4.78972 4.91525 5.00643 5.09983 5.32699 5.33932 5.50109 5.55240 5.62116 5.64070 5.70091 5.81278 5.90908 5.92576 5.97142 6.01841 6.03824 6.24332 6.25063 6.28973 6.37437 6.42778 6.60359 6.76371 6.86311 7.02677 7.15236 7.33843 7.66532 7.87618 7.90142 8.24863 8.94433 9.36240 9.80572 10.48332 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016736 B = 0.002959 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.665602 B = 9460.213510 C =10333.399725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.052 3.948 4 C 0.108 3.892 5 N -0.392 5.392 6 C -0.332 4.332 7 H 0.095 0.905 8 C 0.054 3.946 9 N -0.845 5.845 10 Si 0.919 3.081 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.264 1.264 14 C 0.459 3.541 15 O -0.613 6.613 16 C -0.042 4.042 17 C -0.226 4.226 18 C 0.422 3.578 19 O -0.463 6.463 20 C -0.157 4.157 21 C -0.062 4.062 22 C -0.137 4.137 23 C -0.065 4.065 24 C -0.117 4.117 25 C -0.136 4.136 26 C -0.066 4.066 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.275 0.725 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.127 0.873 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 5.750 -12.548 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.025 4.025 4 C -0.015 4.015 5 N -0.105 5.105 6 C -0.460 4.460 7 H 0.113 0.887 8 C -0.155 4.155 9 N -0.479 5.479 10 Si 0.744 3.256 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.188 1.188 14 C 0.251 3.749 15 O -0.502 6.502 16 C -0.064 4.064 17 C -0.248 4.248 18 C 0.305 3.695 19 O -0.342 6.342 20 C -0.157 4.157 21 C -0.080 4.080 22 C -0.155 4.155 23 C -0.065 4.065 24 C -0.174 4.174 25 C -0.154 4.154 26 C -0.084 4.084 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.145 0.855 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.963 5.487 -12.280 13.593 hybrid contribution -0.352 -0.625 0.267 0.765 sum -2.315 4.862 -12.014 13.165 Atomic orbital electron populations 1.22652 0.83224 1.01826 0.98916 1.88122 1.17570 1.27690 1.95076 1.22994 0.96088 0.84435 0.98998 1.21607 0.89598 0.99448 0.90866 1.43087 1.52070 1.07430 1.07955 1.19437 1.41666 0.82408 1.02533 0.88722 1.25468 0.93368 1.00614 0.96080 1.69620 1.28668 1.37944 1.11710 0.86064 0.79368 0.82296 0.77837 1.20127 1.20591 1.18850 1.18378 0.84552 0.86191 0.85789 1.90634 1.58994 1.14566 1.86050 1.23838 0.89250 1.01161 0.92112 1.23356 1.06674 1.01661 0.93067 1.20584 0.73704 0.87629 0.87618 1.90606 1.40502 1.16756 1.86340 1.20554 1.04886 0.94783 0.95522 1.21390 0.94637 1.00529 0.91482 1.20987 1.02707 0.93252 0.98555 1.20170 0.96622 0.94242 0.95504 1.20849 1.02235 0.99200 0.95094 1.21035 1.01710 1.00127 0.92480 1.21600 0.95270 0.92706 0.98866 0.95079 0.94905 0.90355 0.93967 0.93805 0.86464 0.90716 0.91440 0.84410 0.84576 0.84927 0.85703 0.90919 0.91318 0.91414 0.85525 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.69 10.43 -35.23 -0.37 -8.05 16 3 C 0.05 1.07 6.24 37.16 0.23 1.30 16 4 C 0.11 2.54 5.27 -4.04 -0.02 2.52 16 5 N -0.39 -9.86 2.47 -116.28 -0.29 -10.15 16 6 C -0.33 -8.46 8.29 -15.18 -0.13 -8.59 16 7 H 0.10 2.36 6.67 -52.49 -0.35 2.01 16 8 C 0.05 1.34 4.94 -17.35 -0.09 1.26 16 9 N -0.84 -21.71 11.34 55.55 0.63 -21.09 16 10 Si 0.92 19.72 29.61 -169.99 -5.03 14.69 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 14 C 0.46 11.36 7.54 -12.79 -0.10 11.26 16 15 O -0.61 -15.91 15.92 5.17 0.08 -15.82 16 16 C -0.04 -0.92 8.84 -37.22 -0.33 -1.25 16 17 C -0.23 -4.32 9.07 -37.21 -0.34 -4.65 16 18 C 0.42 7.56 7.08 -32.21 -0.23 7.33 16 19 O -0.46 -9.37 16.25 5.21 0.08 -9.29 16 20 C -0.16 -2.33 5.88 -104.90 -0.62 -2.94 16 21 C -0.06 -0.82 9.60 -39.15 -0.38 -1.20 16 22 C -0.14 -1.48 9.68 -39.64 -0.38 -1.86 16 23 C -0.07 -0.66 5.89 -104.49 -0.62 -1.27 16 24 C -0.12 -0.81 10.00 36.01 0.36 -0.45 16 25 C -0.14 -1.46 9.68 -39.64 -0.38 -1.85 16 26 C -0.07 -0.85 9.46 -39.15 -0.37 -1.22 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.12 2.91 5.39 -51.93 -0.28 2.63 16 33 H 0.07 1.75 7.59 -51.93 -0.39 1.35 16 34 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 35 H 0.14 3.07 5.95 -52.49 -0.31 2.76 16 36 H 0.14 2.46 5.80 -52.49 -0.30 2.16 16 37 H 0.13 1.72 7.65 -52.49 -0.40 1.32 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 41 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.14 1.68 6.23 -52.49 -0.33 1.35 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -30.46 370.53 -7.30 -37.76 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.73 Total: 6.39 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.26 Total: -0.02 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.34 Total: -31.23 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.20 Total: -33.17 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.46 -7.30 -37.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909563138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.683 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds