Wall clock time and date at job start Tue Mar 31 2020 11:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99618 * 2 1 4 4 C 1.53004 * 109.46954 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46952 * 64.99738 * 4 3 2 6 6 C 1.35722 * 120.00338 * 264.50280 * 5 4 3 7 7 H 1.07998 * 119.99746 * 144.58741 * 6 5 4 8 8 C 1.39964 * 119.99921 * 324.59875 * 6 5 4 9 9 N 1.30795 * 119.99779 * 338.96533 * 8 6 5 10 10 Si 1.86798 * 120.00090 * 158.97367 * 8 6 5 11 11 H 1.48501 * 109.47475 * 89.99349 * 10 8 6 12 12 H 1.48503 * 109.46896 * 209.99620 * 10 8 6 13 13 H 1.48498 * 109.46982 * 329.99564 * 10 8 6 14 14 C 1.34775 * 119.99812 * 84.51014 * 5 4 3 15 15 O 1.21719 * 120.00061 * 359.97438 * 14 5 4 16 16 C 1.46823 * 119.99980 * 179.97438 * 14 5 4 17 17 C 1.35122 * 119.99892 * 179.97438 * 16 14 5 18 18 C 1.46842 * 119.99695 * 180.02562 * 17 16 14 19 19 O 1.21675 * 120.00198 * 359.97438 * 18 17 16 20 20 C 1.47755 * 119.99553 * 180.02562 * 18 17 16 21 21 C 1.39721 * 120.15400 * 179.97438 * 20 18 17 22 22 C 1.37907 * 119.84379 * 180.02562 * 21 20 18 23 23 C 1.38407 * 120.15544 * 0.26479 * 22 21 20 24 24 C 1.50701 * 119.84309 * 179.74289 * 23 22 21 25 25 C 1.38413 * 120.31140 * 359.47967 * 23 22 21 26 26 C 1.37903 * 120.15818 * 0.51557 * 25 23 22 27 27 H 1.08998 * 109.47636 * 300.00282 * 1 2 3 28 28 H 1.09006 * 109.46655 * 60.00133 * 1 2 3 29 29 H 1.08998 * 109.46798 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47393 * 59.99963 * 3 2 1 31 31 H 1.09000 * 109.47099 * 299.99600 * 3 2 1 32 32 H 1.09001 * 109.47036 * 304.99763 * 4 3 2 33 33 H 1.09002 * 109.47511 * 184.99924 * 4 3 2 34 34 H 0.97003 * 120.00297 * 180.02562 * 9 8 6 35 35 H 1.07996 * 119.99982 * 359.97438 * 16 14 5 36 36 H 1.07996 * 120.00126 * 0.02562 * 17 16 14 37 37 H 1.08001 * 120.07980 * 0.02562 * 21 20 18 38 38 H 1.07998 * 119.92312 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47065 * 89.99354 * 24 23 22 40 40 H 1.08996 * 109.46802 * 209.99648 * 24 23 22 41 41 H 1.08997 * 109.46852 * 329.99710 * 24 23 22 42 42 H 1.08001 * 119.91783 * 180.24208 * 25 23 22 43 43 H 1.08001 * 120.08116 * 179.72502 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2042 -0.7730 -1.3019 7 1 3.9693 -1.3268 -2.1989 8 6 4.7430 -1.4341 -0.1921 9 7 5.4002 -0.7593 0.7154 10 14 4.5239 -3.2799 -0.0073 11 1 5.6569 -3.9811 -0.6630 12 1 4.4915 -3.6325 1.4349 13 1 3.2491 -3.6935 -0.6468 14 6 4.1567 1.3207 -2.3515 15 8 3.9523 2.5198 -2.3058 16 6 4.5994 0.6988 -3.6056 17 6 4.7794 1.4574 -4.7092 18 6 5.2217 0.8352 -5.9636 19 8 5.4264 -0.3634 -6.0092 20 6 5.4190 1.6648 -7.1702 21 6 5.8403 1.0763 -8.3654 22 6 6.0230 1.8568 -9.4876 23 6 5.7954 3.2208 -9.4304 24 6 6.0028 4.0679 -10.6594 25 6 5.3729 3.8097 -8.2512 26 6 5.1860 3.0415 -7.1213 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5687 0.8427 33 1 3.9785 2.1767 0.0902 34 1 5.7740 -1.2175 1.4844 35 1 4.7812 -0.3650 -3.6460 36 1 4.5981 2.5212 -4.6687 37 1 6.0224 0.0127 -8.4104 38 1 6.3490 1.4033 -10.4120 39 1 5.0731 4.1199 -11.2261 40 1 6.3037 5.0724 -10.3618 41 1 6.7818 3.6240 -11.2794 42 1 5.1935 4.8741 -8.2148 43 1 4.8606 3.5030 -6.2007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909563138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:51 Heat of formation + Delta-G solvation = -83.254062 kcal Electronic energy + Delta-G solvation = -25538.629666 eV Core-core repulsion = 21742.266685 eV Total energy + Delta-G solvation = -3796.362982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16491 -40.59111 -39.36593 -38.57594 -36.80851 -34.22731 -33.73340 -33.58784 -31.96831 -31.07519 -28.80180 -27.34016 -26.86139 -25.76051 -23.85367 -23.60921 -22.42190 -21.12861 -20.22014 -19.11630 -18.35340 -17.63221 -17.22173 -17.09445 -16.59788 -16.28668 -16.18516 -16.06039 -15.88104 -15.65070 -15.39429 -15.10093 -14.83943 -14.60184 -14.49352 -14.38851 -13.73143 -13.46431 -13.25500 -12.99964 -12.98292 -12.90350 -12.83362 -12.57037 -12.54582 -12.44399 -12.11500 -11.90609 -11.82017 -11.18806 -10.96353 -10.72177 -10.60669 -10.45988 -9.96502 -9.68590 -9.60608 -8.41623 -6.02969 -0.72423 0.20238 0.42246 1.40771 1.45897 1.57956 1.73593 2.24988 2.45876 2.64708 2.86482 2.96182 3.07795 3.24142 3.80904 3.91721 4.00960 4.08712 4.20868 4.22943 4.29477 4.40487 4.46281 4.47275 4.50682 4.57903 4.58909 4.75065 4.78904 4.80968 4.83827 4.88648 5.02306 5.10734 5.25708 5.26545 5.30844 5.36868 5.41247 5.46942 5.59081 5.81657 5.96613 6.32471 6.37612 6.45166 7.01319 7.44785 7.88422 8.60366 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016736 B = 0.002959 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.665602 B = 9460.213510 C =10333.399725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.064 3.936 4 C 0.106 3.894 5 N -0.403 5.403 6 C -0.352 4.352 7 H 0.090 0.910 8 C 0.019 3.981 9 N -0.873 5.873 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.273 1.273 13 H -0.265 1.265 14 C 0.453 3.547 15 O -0.633 6.633 16 C -0.076 4.076 17 C -0.190 4.190 18 C 0.425 3.575 19 O -0.491 6.491 20 C -0.186 4.186 21 C -0.071 4.071 22 C -0.137 4.137 23 C -0.054 4.054 24 C -0.117 4.117 25 C -0.137 4.137 26 C -0.072 4.072 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.279 0.721 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.127 0.873 38 H 0.153 0.847 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.155 0.845 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 6.692 -14.837 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.013 4.013 4 C -0.018 4.018 5 N -0.117 5.117 6 C -0.481 4.481 7 H 0.108 0.892 8 C -0.187 4.187 9 N -0.508 5.508 10 Si 0.802 3.198 11 H -0.197 1.197 12 H -0.198 1.198 13 H -0.189 1.189 14 C 0.246 3.754 15 O -0.524 6.524 16 C -0.098 4.098 17 C -0.211 4.211 18 C 0.309 3.691 19 O -0.372 6.372 20 C -0.187 4.187 21 C -0.090 4.090 22 C -0.154 4.154 23 C -0.054 4.054 24 C -0.173 4.173 25 C -0.155 4.155 26 C -0.090 4.090 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.171 0.829 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.172 0.828 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.335 6.433 -14.568 16.096 hybrid contribution -0.222 -0.758 0.747 1.087 sum -2.557 5.676 -13.821 15.158 Atomic orbital electron populations 1.22896 0.80516 1.03379 1.00347 1.88058 1.20586 1.27789 1.95344 1.22794 0.93963 0.84723 0.99865 1.21603 0.91924 0.98323 0.89917 1.43230 1.52468 1.07535 1.08431 1.19549 1.42782 0.82741 1.02984 0.89202 1.26186 0.92724 1.04272 0.95543 1.69689 1.29415 1.39448 1.12265 0.85166 0.79102 0.77588 0.77948 1.19746 1.19820 1.18912 1.18766 0.84034 0.86083 0.86552 1.90588 1.59980 1.15239 1.86591 1.23612 0.92805 1.01058 0.92280 1.23690 1.02647 1.01998 0.92785 1.20853 0.72554 0.87482 0.88195 1.90590 1.41742 1.18064 1.86795 1.20315 1.08328 0.95341 0.94668 1.21484 0.94903 1.00725 0.91852 1.21316 1.01873 0.93606 0.98633 1.20651 0.93970 0.94316 0.96469 1.20949 1.03436 0.99250 0.93686 1.21381 1.00854 1.01371 0.91852 1.21703 0.95333 0.91984 0.99999 0.92687 0.94323 0.88834 0.90895 0.94871 0.87928 0.91661 0.91063 0.85325 0.83292 0.85493 0.82900 0.89506 0.90015 0.90060 0.82770 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.71 10.43 -148.98 -1.55 -18.27 16 3 C 0.06 2.64 6.24 71.98 0.45 3.09 16 4 C 0.11 5.13 5.27 86.38 0.46 5.59 16 5 N -0.40 -21.12 2.47 -640.00 -1.58 -22.70 16 6 C -0.35 -18.64 8.29 84.51 0.70 -17.94 16 7 H 0.09 4.71 6.67 -2.91 -0.02 4.69 16 8 C 0.02 0.97 4.94 85.27 0.42 1.39 16 9 N -0.87 -46.05 11.34 21.83 0.25 -45.80 16 10 Si 0.98 41.05 29.61 68.60 2.03 43.08 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 13 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 14 C 0.45 23.35 7.54 86.49 0.65 24.00 16 15 O -0.63 -33.81 15.92 -4.41 -0.07 -33.88 16 16 C -0.08 -3.50 8.84 23.80 0.21 -3.29 16 17 C -0.19 -7.43 9.07 23.80 0.22 -7.21 16 18 C 0.43 15.55 7.08 27.04 0.19 15.74 16 19 O -0.49 -20.57 16.25 -4.27 -0.07 -20.63 16 20 C -0.19 -5.44 5.88 -20.05 -0.12 -5.56 16 21 C -0.07 -1.82 9.60 22.55 0.22 -1.60 16 22 C -0.14 -2.56 9.68 22.23 0.22 -2.34 16 23 C -0.05 -0.89 5.89 -19.78 -0.12 -1.01 16 24 C -0.12 -1.08 10.00 71.24 0.71 -0.36 16 25 C -0.14 -2.53 9.68 22.23 0.22 -2.32 16 26 C -0.07 -1.76 9.46 22.55 0.21 -1.54 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 5.29 5.39 -2.39 -0.01 5.27 16 33 H 0.07 3.19 7.59 -2.39 -0.02 3.17 16 34 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 35 H 0.13 6.11 5.95 -2.91 -0.02 6.09 16 36 H 0.15 5.42 5.80 -2.91 -0.02 5.40 16 37 H 0.13 3.29 7.65 -2.91 -0.02 3.27 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 41 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.14 3.23 6.23 -2.91 -0.02 3.21 16 Total: -1.00 -68.09 370.53 5.91 -62.18 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 1.02 Total: 27.41 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.88 Total: 8.63 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -1.34 Total: -68.51 kcal Atomic # 8 Polarization: -71.09 SS G_CDS: -1.69 Total: -72.78 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -68.09 5.91 -62.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909563138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.074 kcal (2) G-P(sol) polarization free energy of solvation -68.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds