Wall clock time and date at job start Tue Mar 31 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00023 * 2 1 4 4 C 1.53002 * 109.46934 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47061 * 65.86124 * 4 3 2 6 6 C 1.35718 * 119.99636 * 262.37541 * 5 4 3 7 7 H 1.08004 * 119.99993 * 147.87581 * 6 5 4 8 8 C 1.39966 * 120.00317 * 327.87961 * 6 5 4 9 9 N 1.30796 * 119.99876 * 154.03393 * 8 6 5 10 10 Si 1.86796 * 119.99729 * 334.03062 * 8 6 5 11 11 H 1.48501 * 109.47295 * 91.14091 * 10 8 6 12 12 H 1.48500 * 109.47150 * 211.14035 * 10 8 6 13 13 H 1.48501 * 109.47419 * 331.14137 * 10 8 6 14 14 C 1.34776 * 120.00663 * 82.37921 * 5 4 3 15 15 O 1.21725 * 119.99723 * 0.02562 * 14 5 4 16 16 C 1.46822 * 120.00396 * 179.97438 * 14 5 4 17 17 C 1.35123 * 119.99689 * 188.96039 * 16 14 5 18 18 C 1.46829 * 120.00070 * 30.36071 * 17 16 14 19 19 O 1.21672 * 120.00259 * 5.70695 * 18 17 16 20 20 C 1.47763 * 119.99842 * 185.70956 * 18 17 16 21 21 C 1.39717 * 120.15438 * 179.97438 * 20 18 17 22 22 C 1.37910 * 119.83656 * 179.97438 * 21 20 18 23 23 C 1.38405 * 120.15891 * 0.25332 * 22 21 20 24 24 C 1.50702 * 119.84429 * 179.74259 * 23 22 21 25 25 C 1.38411 * 120.31621 * 359.49106 * 23 22 21 26 26 C 1.37910 * 120.14951 * 0.50879 * 25 23 22 27 27 H 1.09001 * 109.46989 * 60.00653 * 1 2 3 28 28 H 1.08996 * 109.47036 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47571 * 300.00829 * 1 2 3 30 30 H 1.09003 * 109.47235 * 59.99610 * 3 2 1 31 31 H 1.09003 * 109.46965 * 299.99731 * 3 2 1 32 32 H 1.08995 * 109.46949 * 305.85117 * 4 3 2 33 33 H 1.09005 * 109.46568 * 185.85556 * 4 3 2 34 34 H 0.97002 * 119.99084 * 179.97438 * 9 8 6 35 35 H 1.08000 * 119.99607 * 8.96565 * 16 14 5 36 36 H 1.08001 * 119.99628 * 210.35271 * 17 16 14 37 37 H 1.07990 * 120.07997 * 359.97438 * 21 20 18 38 38 H 1.08005 * 119.91778 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.46935 * 89.99514 * 24 23 22 40 40 H 1.08998 * 109.47296 * 210.00337 * 24 23 22 41 41 H 1.09000 * 109.46985 * 330.00539 * 24 23 22 42 42 H 1.07991 * 119.92509 * 180.23423 * 25 23 22 43 43 H 1.08001 * 120.07172 * 179.77053 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9781 0.5828 -1.2595 6 6 4.2472 -0.7461 -1.3190 7 1 4.0666 -1.2933 -2.2326 8 6 4.7586 -1.4077 -0.1966 9 7 4.5543 -2.6905 -0.0441 10 14 5.7330 -0.4584 1.0835 11 1 4.8124 0.0412 2.1362 12 1 6.7475 -1.3527 1.6969 13 1 6.4139 0.6911 0.4352 14 6 4.1183 1.3486 -2.3596 15 8 3.8774 2.5406 -2.3060 16 6 4.5625 0.7454 -3.6223 17 6 4.8771 1.5338 -4.6737 18 6 5.4219 2.8782 -4.4461 19 8 5.6874 3.2438 -3.3165 20 6 5.6476 3.7870 -5.5891 21 6 6.1653 5.0672 -5.3763 22 6 6.3739 5.9098 -6.4479 23 6 6.0668 5.4920 -7.7311 24 6 6.2921 6.4208 -8.8963 25 6 5.5585 4.2234 -7.9499 26 6 5.3448 3.3701 -6.8878 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8497 0.5561 0.8338 33 1 3.9783 2.1751 0.1055 34 1 4.9091 -3.1490 0.7336 35 1 4.6376 -0.3283 -3.7108 36 1 4.7280 1.1749 -5.6814 37 1 6.4016 5.3959 -4.3751 38 1 6.7737 6.8998 -6.2848 39 1 7.2999 6.2772 -9.2857 40 1 5.5656 6.2041 -9.6795 41 1 6.1738 7.4529 -8.5664 42 1 5.3246 3.9025 -8.9542 43 1 4.9447 2.3817 -7.0596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909563139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:54 Heat of formation + Delta-G solvation = -37.731095 kcal Electronic energy + Delta-G solvation = -26133.140370 eV Core-core repulsion = 22338.751412 eV Total energy + Delta-G solvation = -3794.388958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.80625 -38.96946 -37.82929 -36.89604 -34.78976 -32.96785 -32.27611 -32.02526 -30.92258 -29.51010 -27.72315 -25.91478 -25.08541 -24.06907 -22.64135 -22.57472 -21.19671 -19.69847 -18.40413 -17.34818 -16.72904 -16.25863 -15.75426 -15.48982 -15.29684 -15.03640 -14.74867 -14.49188 -14.27798 -14.10054 -13.87778 -13.54518 -13.53274 -13.45542 -13.17349 -12.51905 -12.49024 -12.33377 -12.18198 -11.82356 -11.81461 -11.65896 -11.58568 -11.37306 -10.95560 -10.91158 -10.70995 -10.15289 -9.87893 -9.31484 -9.19097 -9.07400 -8.97580 -8.78655 -8.60835 -8.17327 -7.85175 -6.56646 -3.91082 0.72990 1.39896 1.49686 3.03809 3.20334 3.26169 3.31842 4.01567 4.09368 4.28472 4.35038 4.45397 4.53131 4.74353 4.75561 4.96643 5.02575 5.14809 5.37325 5.39212 5.54944 5.59346 5.60798 5.66705 5.70867 5.77908 5.84835 5.88006 5.98474 5.99483 6.04295 6.06262 6.11849 6.29800 6.35136 6.47410 6.49050 6.52336 6.67785 6.91144 6.97814 7.23573 7.78699 7.99322 8.19383 8.29608 8.92155 9.37412 9.75923 10.53384 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.003192 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.333839 B = 8768.949148 C = 9233.364417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.094 3.906 5 N -0.423 5.423 6 C -0.341 4.341 7 H 0.108 0.892 8 C 0.076 3.924 9 N -0.833 5.833 10 Si 0.868 3.132 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.258 1.258 14 C 0.471 3.529 15 O -0.579 6.579 16 C -0.055 4.055 17 C -0.224 4.224 18 C 0.405 3.595 19 O -0.410 6.410 20 C -0.145 4.145 21 C -0.065 4.065 22 C -0.134 4.134 23 C -0.073 4.073 24 C -0.116 4.116 25 C -0.135 4.135 26 C -0.076 4.076 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.277 0.723 35 H 0.144 0.856 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.124 0.876 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 10.084 -11.616 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.022 4.022 4 C -0.029 4.029 5 N -0.140 5.140 6 C -0.468 4.468 7 H 0.125 0.875 8 C -0.135 4.135 9 N -0.466 5.466 10 Si 0.695 3.305 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.182 1.182 14 C 0.263 3.737 15 O -0.464 6.464 16 C -0.076 4.076 17 C -0.246 4.246 18 C 0.282 3.718 19 O -0.284 6.284 20 C -0.146 4.146 21 C -0.084 4.084 22 C -0.152 4.152 23 C -0.073 4.073 24 C -0.172 4.172 25 C -0.153 4.153 26 C -0.094 4.094 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.142 0.858 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.001 10.493 -10.821 15.073 hybrid contribution 0.149 0.246 0.666 0.726 sum 0.149 10.739 -10.154 14.780 Atomic orbital electron populations 1.22654 0.82929 1.02063 0.98822 1.88180 1.17802 1.26861 1.95064 1.22840 0.94748 0.85062 0.99581 1.21886 0.92437 0.99497 0.89120 1.43368 1.54596 1.08645 1.07435 1.19037 1.43736 0.81885 1.02135 0.87492 1.25354 0.95891 0.95120 0.97146 1.69545 1.38513 1.10007 1.28551 0.87169 0.80573 0.81048 0.81729 1.19791 1.21236 1.18153 1.18230 0.84291 0.85911 0.85259 1.90719 1.56247 1.14277 1.85194 1.23878 0.90028 1.00859 0.92884 1.23394 1.05983 0.96289 0.98929 1.20403 0.77824 0.86106 0.87447 1.90705 1.38499 1.74790 1.24429 1.20767 1.02731 0.96032 0.95075 1.21398 0.94815 0.92569 0.99577 1.20990 1.02169 1.00045 0.92015 1.20108 0.97289 0.94951 0.94943 1.20825 1.02192 0.98300 0.95902 1.20981 1.01612 0.93743 0.98981 1.21463 0.96690 0.99700 0.91564 0.94863 0.90080 0.95143 0.93848 0.92937 0.89944 0.89787 0.91198 0.83865 0.84862 0.85035 0.85872 0.91064 0.91464 0.91514 0.85791 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.84 10.57 -35.23 -0.37 -8.21 16 3 C 0.06 1.15 6.22 37.16 0.23 1.38 16 4 C 0.09 2.17 4.29 -4.04 -0.02 2.16 16 5 N -0.42 -10.52 2.22 -116.28 -0.26 -10.78 16 6 C -0.34 -8.86 9.03 -15.19 -0.14 -9.00 16 7 H 0.11 2.82 6.55 -52.48 -0.34 2.48 16 8 C 0.08 1.99 5.24 -17.35 -0.09 1.90 16 9 N -0.83 -22.59 13.93 55.55 0.77 -21.81 16 10 Si 0.87 20.52 25.23 -169.99 -4.29 16.23 16 11 H -0.27 -6.15 6.44 56.52 0.36 -5.78 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.47 11.52 6.83 -12.79 -0.09 11.43 16 15 O -0.58 -15.18 13.00 -19.65 -0.26 -15.44 16 16 C -0.05 -1.13 9.20 -37.22 -0.34 -1.47 16 17 C -0.22 -3.97 9.40 -37.22 -0.35 -4.32 16 18 C 0.40 7.84 6.51 -32.22 -0.21 7.63 16 19 O -0.41 -9.66 13.30 -19.60 -0.26 -9.92 16 20 C -0.15 -2.29 5.88 -104.90 -0.62 -2.90 16 21 C -0.07 -0.96 9.60 -39.15 -0.38 -1.34 16 22 C -0.13 -1.59 9.68 -39.64 -0.38 -1.97 16 23 C -0.07 -0.77 5.89 -104.50 -0.62 -1.39 16 24 C -0.12 -0.85 10.00 36.01 0.36 -0.49 16 25 C -0.14 -1.46 9.68 -39.64 -0.38 -1.84 16 26 C -0.08 -0.96 9.46 -39.15 -0.37 -1.33 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 1.11 8.02 -51.93 -0.42 0.69 16 32 H 0.08 1.96 3.10 -51.93 -0.16 1.80 16 33 H 0.08 1.90 7.66 -51.93 -0.40 1.51 16 34 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 35 H 0.14 2.73 6.37 -52.49 -0.33 2.40 16 36 H 0.13 1.76 6.36 -52.49 -0.33 1.43 16 37 H 0.13 2.00 7.65 -52.49 -0.40 1.60 16 38 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 41 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.38 6.24 -52.49 -0.33 1.05 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -32.92 360.05 -7.20 -40.12 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.69 Total: 4.31 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.28 Total: 0.09 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.52 Total: -32.60 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.89 Total: -33.57 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.29 Total: 16.23 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.92 -7.20 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909563139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.387 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds