Wall clock time and date at job start Tue Mar 31 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00023 * 2 1 4 4 C 1.53002 * 109.46934 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47061 * 65.86124 * 4 3 2 6 6 C 1.35718 * 119.99636 * 262.37541 * 5 4 3 7 7 H 1.08004 * 119.99993 * 147.87581 * 6 5 4 8 8 C 1.39966 * 120.00317 * 327.87961 * 6 5 4 9 9 N 1.30796 * 119.99876 * 154.03393 * 8 6 5 10 10 Si 1.86796 * 119.99729 * 334.03062 * 8 6 5 11 11 H 1.48501 * 109.47295 * 91.14091 * 10 8 6 12 12 H 1.48500 * 109.47150 * 211.14035 * 10 8 6 13 13 H 1.48501 * 109.47419 * 331.14137 * 10 8 6 14 14 C 1.34776 * 120.00663 * 82.37921 * 5 4 3 15 15 O 1.21725 * 119.99723 * 0.02562 * 14 5 4 16 16 C 1.46822 * 120.00396 * 179.97438 * 14 5 4 17 17 C 1.35123 * 119.99689 * 188.96039 * 16 14 5 18 18 C 1.46829 * 120.00070 * 30.36071 * 17 16 14 19 19 O 1.21672 * 120.00259 * 5.70695 * 18 17 16 20 20 C 1.47763 * 119.99842 * 185.70956 * 18 17 16 21 21 C 1.39717 * 120.15438 * 179.97438 * 20 18 17 22 22 C 1.37910 * 119.83656 * 179.97438 * 21 20 18 23 23 C 1.38405 * 120.15891 * 0.25332 * 22 21 20 24 24 C 1.50702 * 119.84429 * 179.74259 * 23 22 21 25 25 C 1.38411 * 120.31621 * 359.49106 * 23 22 21 26 26 C 1.37910 * 120.14951 * 0.50879 * 25 23 22 27 27 H 1.09001 * 109.46989 * 60.00653 * 1 2 3 28 28 H 1.08996 * 109.47036 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47571 * 300.00829 * 1 2 3 30 30 H 1.09003 * 109.47235 * 59.99610 * 3 2 1 31 31 H 1.09003 * 109.46965 * 299.99731 * 3 2 1 32 32 H 1.08995 * 109.46949 * 305.85117 * 4 3 2 33 33 H 1.09005 * 109.46568 * 185.85556 * 4 3 2 34 34 H 0.97002 * 119.99084 * 179.97438 * 9 8 6 35 35 H 1.08000 * 119.99607 * 8.96565 * 16 14 5 36 36 H 1.08001 * 119.99628 * 210.35271 * 17 16 14 37 37 H 1.07990 * 120.07997 * 359.97438 * 21 20 18 38 38 H 1.08005 * 119.91778 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.46935 * 89.99514 * 24 23 22 40 40 H 1.08998 * 109.47296 * 210.00337 * 24 23 22 41 41 H 1.09000 * 109.46985 * 330.00539 * 24 23 22 42 42 H 1.07991 * 119.92509 * 180.23423 * 25 23 22 43 43 H 1.08001 * 120.07172 * 179.77053 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9781 0.5828 -1.2595 6 6 4.2472 -0.7461 -1.3190 7 1 4.0666 -1.2933 -2.2326 8 6 4.7586 -1.4077 -0.1966 9 7 4.5543 -2.6905 -0.0441 10 14 5.7330 -0.4584 1.0835 11 1 4.8124 0.0412 2.1362 12 1 6.7475 -1.3527 1.6969 13 1 6.4139 0.6911 0.4352 14 6 4.1183 1.3486 -2.3596 15 8 3.8774 2.5406 -2.3060 16 6 4.5625 0.7454 -3.6223 17 6 4.8771 1.5338 -4.6737 18 6 5.4219 2.8782 -4.4461 19 8 5.6874 3.2438 -3.3165 20 6 5.6476 3.7870 -5.5891 21 6 6.1653 5.0672 -5.3763 22 6 6.3739 5.9098 -6.4479 23 6 6.0668 5.4920 -7.7311 24 6 6.2921 6.4208 -8.8963 25 6 5.5585 4.2234 -7.9499 26 6 5.3448 3.3701 -6.8878 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8497 0.5561 0.8338 33 1 3.9783 2.1751 0.1055 34 1 4.9091 -3.1490 0.7336 35 1 4.6376 -0.3283 -3.7108 36 1 4.7280 1.1749 -5.6814 37 1 6.4016 5.3959 -4.3751 38 1 6.7737 6.8998 -6.2848 39 1 7.2999 6.2772 -9.2857 40 1 5.5656 6.2041 -9.6795 41 1 6.1738 7.4529 -8.5664 42 1 5.3246 3.9025 -8.9542 43 1 4.9447 2.3817 -7.0596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909563139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:54 Heat of formation + Delta-G solvation = -57.173881 kcal Electronic energy + Delta-G solvation = -26133.983472 eV Core-core repulsion = 22338.751412 eV Total energy + Delta-G solvation = -3795.232060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25088 -40.49780 -39.23283 -38.50098 -36.68726 -34.20465 -34.05812 -33.51161 -31.93705 -31.15879 -28.71815 -27.31032 -26.92992 -25.55604 -24.13725 -23.53248 -22.50102 -21.26240 -20.14264 -18.80879 -18.47558 -17.78357 -17.49376 -17.04975 -16.52670 -16.32402 -16.18656 -16.12352 -15.70043 -15.44855 -15.32577 -15.02109 -14.77654 -14.49355 -14.47425 -14.35135 -14.02028 -13.71670 -13.58263 -13.23243 -13.17246 -12.96235 -12.77272 -12.61133 -12.49783 -12.43707 -11.99475 -11.87969 -11.72191 -11.11446 -10.85207 -10.67103 -10.51933 -9.93165 -9.89458 -9.77058 -9.59530 -8.54762 -5.93725 -0.61468 0.20699 0.45603 1.14991 1.28751 1.39745 1.91600 2.16059 2.39811 2.61262 2.86127 2.95154 3.15269 3.18484 3.85778 3.95084 4.00161 4.05608 4.10257 4.19230 4.29307 4.33077 4.44397 4.45377 4.51724 4.53931 4.55316 4.60931 4.73192 4.80837 4.81342 4.85138 4.89575 5.06583 5.11492 5.23908 5.31175 5.36211 5.39455 5.59625 5.61847 6.00773 6.01711 6.23760 6.33660 6.79615 6.96179 7.45241 7.84860 8.59264 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.003192 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.333839 B = 8768.949148 C = 9233.364417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.086 3.914 5 N -0.439 5.439 6 C -0.344 4.344 7 H 0.094 0.906 8 C 0.045 3.955 9 N -0.870 5.870 10 Si 0.910 3.090 11 H -0.257 1.257 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.469 3.531 15 O -0.600 6.600 16 C -0.095 4.095 17 C -0.183 4.183 18 C 0.396 3.604 19 O -0.465 6.465 20 C -0.179 4.179 21 C -0.085 4.085 22 C -0.139 4.139 23 C -0.062 4.062 24 C -0.115 4.115 25 C -0.133 4.133 26 C -0.071 4.071 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.281 0.719 35 H 0.156 0.844 36 H 0.189 0.811 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.161 0.839 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 11.441 -14.765 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.037 4.037 5 N -0.158 5.158 6 C -0.472 4.472 7 H 0.111 0.889 8 C -0.163 4.163 9 N -0.505 5.505 10 Si 0.736 3.264 11 H -0.183 1.183 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.262 3.738 15 O -0.487 6.487 16 C -0.116 4.116 17 C -0.203 4.203 18 C 0.277 3.723 19 O -0.343 6.343 20 C -0.180 4.180 21 C -0.103 4.103 22 C -0.157 4.157 23 C -0.062 4.062 24 C -0.172 4.172 25 C -0.151 4.151 26 C -0.089 4.089 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.174 0.826 36 H 0.206 0.794 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.179 0.821 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.328 11.842 -13.982 18.325 hybrid contribution 0.257 0.089 1.323 1.351 sum -0.071 11.931 -12.659 17.395 Atomic orbital electron populations 1.22883 0.80288 1.03355 1.00420 1.88118 1.20811 1.27347 1.95359 1.22716 0.92999 0.85120 1.00522 1.21957 0.94498 0.98787 0.88426 1.43405 1.55949 1.08319 1.08101 1.18918 1.44142 0.82307 1.01822 0.88862 1.25741 0.96412 0.95611 0.98517 1.69581 1.40306 1.10913 1.29700 0.86501 0.79817 0.79477 0.80584 1.18290 1.20323 1.20271 1.18922 0.83051 0.85672 0.86185 1.90690 1.56807 1.15345 1.85883 1.23871 0.93804 1.01832 0.92082 1.24044 1.00720 0.94903 1.00657 1.21166 0.76224 0.87064 0.87858 1.90687 1.40985 1.75815 1.26793 1.20551 1.06279 0.96068 0.95128 1.21407 0.95976 0.93228 0.99726 1.21243 1.02005 1.00530 0.91902 1.20611 0.94766 0.95495 0.95355 1.20925 1.03527 0.97892 0.94821 1.21428 1.00309 0.93284 1.00059 1.21733 0.95724 1.01068 0.90387 0.94076 0.89033 0.92614 0.90614 0.94041 0.90661 0.90279 0.90826 0.82626 0.79431 0.87253 0.83808 0.89609 0.89710 0.90619 0.82144 0.82698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.30 10.57 -148.98 -1.57 -18.87 16 3 C 0.06 2.66 6.22 71.98 0.45 3.10 16 4 C 0.09 4.11 4.29 86.38 0.37 4.48 16 5 N -0.44 -22.61 2.22 -640.01 -1.42 -24.03 16 6 C -0.34 -18.54 9.03 84.51 0.76 -17.78 16 7 H 0.09 5.13 6.55 -2.91 -0.02 5.12 16 8 C 0.04 2.41 5.24 85.27 0.45 2.85 16 9 N -0.87 -48.36 13.93 21.83 0.30 -48.06 16 10 Si 0.91 43.36 25.23 68.60 1.73 45.09 16 11 H -0.26 -11.51 6.44 99.48 0.64 -10.87 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 14 C 0.47 23.69 6.83 86.49 0.59 24.28 16 15 O -0.60 -32.64 13.00 19.30 0.25 -32.39 16 16 C -0.09 -3.94 9.20 23.80 0.22 -3.72 16 17 C -0.18 -6.24 9.40 23.80 0.22 -6.01 16 18 C 0.40 15.45 6.51 27.04 0.18 15.62 16 19 O -0.47 -22.93 13.30 19.47 0.26 -22.67 16 20 C -0.18 -5.50 5.88 -20.04 -0.12 -5.62 16 21 C -0.08 -2.51 9.60 22.55 0.22 -2.29 16 22 C -0.14 -3.01 9.68 22.23 0.22 -2.80 16 23 C -0.06 -1.08 5.89 -19.78 -0.12 -1.19 16 24 C -0.12 -1.13 10.00 71.24 0.71 -0.42 16 25 C -0.13 -2.26 9.68 22.23 0.22 -2.04 16 26 C -0.07 -1.55 9.46 22.55 0.21 -1.34 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.04 1.78 8.02 -2.39 -0.02 1.76 16 32 H 0.08 3.65 3.10 -2.39 -0.01 3.64 16 33 H 0.08 3.73 7.66 -2.38 -0.02 3.72 16 34 H 0.28 14.55 8.30 -92.71 -0.77 13.78 16 35 H 0.16 6.02 6.37 -2.91 -0.02 6.00 16 36 H 0.19 4.20 6.36 -2.91 -0.02 4.18 16 37 H 0.11 3.59 7.65 -2.92 -0.02 3.57 16 38 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 41 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 42 H 0.16 1.60 8.06 -2.92 -0.02 1.57 16 43 H 0.16 2.51 6.24 -2.91 -0.02 2.49 16 Total: -1.00 -76.22 360.05 6.34 -69.88 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.96 Total: 21.83 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.82 Total: 9.22 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.11 Total: -72.09 kcal Atomic # 8 Polarization: -72.87 SS G_CDS: -1.06 Total: -73.93 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.73 Total: 45.09 kcal Total: -76.22 6.34 -69.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909563139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.709 kcal (2) G-P(sol) polarization free energy of solvation -76.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds