Wall clock time and date at job start Tue Mar 31 2020 11:48:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 O 1.21218 * 119.99688 * 2 1
4 4 C 1.47391 * 120.00187 * 179.97438 * 2 1 3
5 5 C 1.39831 * 120.02722 * 355.67926 * 4 2 1
6 6 C 1.37752 * 119.97000 * 179.97438 * 5 4 2
7 7 C 1.39585 * 120.02967 * 0.02562 * 6 5 4
8 8 C 1.48070 * 119.97280 * 180.02562 * 7 6 5
9 9 O 1.21522 * 120.00179 * 203.80872 * 8 7 6
10 10 N 1.34777 * 120.00037 * 23.80122 * 8 7 6
11 11 C 1.47422 * 125.64570 * 5.36133 * 10 8 7
12 12 C 1.55131 * 104.71931 * 155.81450 * 11 10 8
13 13 C 1.55157 * 101.48466 * 37.30138 * 12 11 10
14 14 O 1.42894 * 110.72313 * 82.69154 * 13 12 11
15 15 C 1.50697 * 110.87108 * 205.89860 * 13 12 11
16 16 H 1.08004 * 120.00297 * 355.05436 * 15 13 12
17 17 C 1.37880 * 119.99997 * 175.06409 * 15 13 12
18 18 N 1.31513 * 119.99965 * 359.97438 * 17 15 13
19 19 Si 1.86806 * 119.99857 * 179.97438 * 17 15 13
20 20 H 1.48493 * 109.47302 * 359.97438 * 19 17 15
21 21 H 1.48499 * 109.46958 * 119.99871 * 19 17 15
22 22 H 1.48499 * 109.46936 * 239.99538 * 19 17 15
23 23 C 1.47016 * 125.65015 * 185.67258 * 10 8 7
24 24 C 1.39556 * 120.05702 * 359.97438 * 7 6 5
25 25 C 1.37796 * 120.02441 * 359.97438 * 24 7 6
26 26 C 1.50699 * 120.00943 * 180.02562 * 25 24 7
27 27 H 1.09007 * 109.47164 * 240.00149 * 1 2 3
28 28 H 1.08999 * 109.47629 * 0.02562 * 1 2 3
29 29 H 1.08998 * 109.47025 * 120.00733 * 1 2 3
30 30 H 1.07997 * 120.01580 * 0.24640 * 5 4 2
31 31 H 1.08003 * 119.98093 * 179.97438 * 6 5 4
32 32 H 1.08996 * 110.37368 * 274.74712 * 11 10 8
33 33 H 1.09004 * 110.37031 * 37.07314 * 11 10 8
34 34 H 1.08991 * 111.19504 * 279.19281 * 12 11 10
35 35 H 1.09006 * 110.93803 * 155.29095 * 12 11 10
36 36 H 0.96709 * 114.00176 * 185.02570 * 14 13 12
37 37 H 0.97002 * 119.99888 * 180.02562 * 18 17 15
38 38 H 1.09002 * 109.88473 * 300.44046 * 23 10 8
39 39 H 1.09006 * 109.88368 * 61.44712 * 23 10 8
40 40 H 1.07996 * 119.98575 * 180.02562 * 24 7 6
41 41 H 1.09004 * 109.46624 * 97.67310 * 26 25 24
42 42 H 1.08998 * 109.47170 * 217.67073 * 26 25 24
43 43 H 1.09003 * 109.47291 * 337.67432 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1131 1.0498 0.0000
4 6 2.2440 -1.2764 0.0006
5 6 1.5485 -2.4860 0.0923
6 6 2.2384 -3.6783 0.0922
7 6 3.6313 -3.6793 0.0011
8 6 4.3716 -4.9616 0.0005
9 8 5.5346 -4.9920 0.3516
10 7 3.7556 -6.0953 -0.3892
11 6 2.3918 -6.1856 -0.9418
12 6 2.3904 -7.4935 -1.7760
13 6 3.2770 -8.4188 -0.9013
14 8 2.5091 -9.0097 0.1489
15 6 3.9352 -9.4827 -1.7415
16 1 3.6933 -9.5688 -2.7906
17 6 4.8460 -10.3464 -1.1710
18 7 5.1408 -10.2414 0.1064
19 14 5.6613 -11.6657 -2.2124
20 1 5.1617 -11.5739 -3.6077
21 1 7.1329 -11.4677 -2.1990
22 1 5.3369 -13.0046 -1.6580
23 6 4.3299 -7.4472 -0.3277
24 6 4.3267 -2.4728 -0.0905
25 6 3.6388 -1.2789 -0.0917
26 6 4.3900 0.0237 -0.1912
27 1 -0.3634 -0.5138 0.8900
28 1 -0.3634 1.0276 -0.0005
29 1 -0.3633 -0.5139 -0.8899
30 1 0.4705 -2.4856 0.1588
31 1 1.7014 -4.6126 0.1635
32 1 1.6594 -6.2456 -0.1368
33 1 2.1841 -5.3279 -1.5816
34 1 2.8389 -7.3358 -2.7568
35 1 1.3812 -7.8944 -1.8702
36 1 3.0313 -9.5360 0.7698
37 1 5.7819 -10.8488 0.5077
38 1 5.2398 -7.4911 -0.9263
39 1 4.5539 -7.7082 0.7067
40 1 5.4043 -2.4750 -0.1614
41 1 4.3860 0.3673 -1.2257
42 1 3.9089 0.7698 0.4412
43 1 5.4183 -0.1237 0.1387
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000911525985.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:48:59
Heat of formation + Delta-G solvation = -86.219577 kcal
Electronic energy + Delta-G solvation = -26448.658219 eV
Core-core repulsion = 22652.166643 eV
Total energy + Delta-G solvation = -3796.491576 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.146 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.64661 -39.62202 -38.06971 -37.12663 -34.53381 -32.99307 -32.29118 -32.26619
-30.17153 -29.64301 -28.14131 -26.93483 -25.73308 -24.09707 -22.86605 -21.67567
-20.26177 -19.79993 -19.15235 -17.26186 -16.94550 -16.77441 -16.09641 -15.63148
-15.38536 -15.10847 -14.88467 -14.51243 -14.45314 -14.17511 -13.66654 -13.44933
-13.23233 -13.07559 -12.94914 -12.79577 -12.56688 -12.43646 -12.18562 -12.17252
-12.06086 -11.69530 -11.47919 -11.24565 -11.06955 -10.83930 -10.68205 -10.50883
-10.24855 -9.78168 -9.51600 -9.38968 -9.12553 -8.87303 -8.73257 -8.38766
-8.00977 -6.33840 -4.42436 0.25590 1.19078 2.00362 3.08025 3.17040
3.26436 3.29501 3.43262 3.76268 3.79721 4.23180 4.52840 4.62742
4.64924 4.77877 4.94345 4.99681 5.06625 5.12171 5.21437 5.29374
5.38346 5.50994 5.59614 5.63128 5.63683 5.73360 5.79006 5.86194
5.94779 6.02760 6.11554 6.24687 6.36551 6.40229 6.63508 6.67582
6.76670 6.86804 7.18622 7.27328 7.29599 7.67707 7.94203 8.06290
8.54177 8.62410 9.22373 9.32051 10.74049
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.027823 B = 0.002961 C = 0.002794
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1006.103651 B = 9455.164652 C =10020.622274
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.395 3.605
3 O -0.454 6.454
4 C -0.167 4.167
5 C -0.076 4.076
6 C -0.121 4.121
7 C -0.079 4.079
8 C 0.555 3.445
9 O -0.541 6.541
10 N -0.602 5.602
11 C 0.095 3.905
12 C -0.119 4.119
13 C 0.248 3.752
14 O -0.585 6.585
15 C -0.538 4.538
16 H 0.067 0.933
17 C 0.070 3.930
18 N -0.894 5.894
19 Si 0.904 3.096
20 H -0.271 1.271
21 H -0.282 1.282
22 H -0.281 1.281
23 C 0.103 3.897
24 C -0.083 4.083
25 C -0.033 4.033
26 C -0.128 4.128
27 H 0.094 0.906
28 H 0.084 0.916
29 H 0.095 0.905
30 H 0.137 0.863
31 H 0.149 0.851
32 H 0.070 0.930
33 H 0.068 0.932
34 H 0.078 0.922
35 H 0.078 0.922
36 H 0.383 0.617
37 H 0.270 0.730
38 H 0.069 0.931
39 H 0.068 0.932
40 H 0.139 0.861
41 H 0.073 0.927
42 H 0.098 0.902
43 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.533 15.886 -0.511 18.534
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.258 4.258
2 C 0.275 3.725
3 O -0.330 6.330
4 C -0.168 4.168
5 C -0.094 4.094
6 C -0.139 4.139
7 C -0.083 4.083
8 C 0.343 3.657
9 O -0.421 6.421
10 N -0.334 5.334
11 C -0.027 4.027
12 C -0.157 4.157
13 C 0.208 3.792
14 O -0.394 6.394
15 C -0.576 4.576
16 H 0.086 0.914
17 C -0.133 4.133
18 N -0.533 5.533
19 Si 0.731 3.269
20 H -0.196 1.196
21 H -0.208 1.208
22 H -0.207 1.207
23 C -0.018 4.018
24 C -0.102 4.102
25 C -0.033 4.033
26 C -0.184 4.184
27 H 0.113 0.887
28 H 0.103 0.897
29 H 0.113 0.887
30 H 0.155 0.845
31 H 0.166 0.834
32 H 0.088 0.912
33 H 0.087 0.913
34 H 0.097 0.903
35 H 0.097 0.903
36 H 0.233 0.767
37 H 0.080 0.920
38 H 0.088 0.912
39 H 0.086 0.914
40 H 0.157 0.843
41 H 0.092 0.908
42 H 0.116 0.884
43 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -8.932 16.679 -0.472 18.926
hybrid contribution 0.963 -1.298 -0.140 1.623
sum -7.969 15.381 -0.612 17.333
Atomic orbital electron populations
1.22265 0.93662 1.05113 1.04711 1.22559 0.91637 0.87543 0.70808
1.90457 1.71375 1.34616 1.36582 1.20443 0.94008 0.94930 1.07422
1.21348 1.00095 0.90995 0.96964 1.21925 0.93388 0.99587 0.99042
1.20349 0.94009 0.94030 0.99883 1.17982 0.86153 0.82763 0.78786
1.90760 1.16127 1.86024 1.49140 1.48719 1.16304 1.07802 1.60586
1.22692 0.84040 0.99181 0.96831 1.22832 1.01343 0.93312 0.98181
1.19508 0.85865 0.89082 0.84780 1.86101 1.40246 1.70314 1.42707
1.21523 1.24292 1.15260 0.96513 0.91441 1.25078 0.95613 0.97362
0.95241 1.69695 1.34352 1.38226 1.10981 0.86343 0.79077 0.81056
0.80414 1.19570 1.20757 1.20716 1.23092 0.98815 0.77844 1.02057
1.21180 1.00867 0.90095 0.98052 1.20156 0.92515 0.95813 0.94821
1.21192 0.99376 0.94332 1.03518 0.88747 0.89730 0.88673 0.84546
0.83384 0.91179 0.91336 0.90299 0.90321 0.76682 0.92002 0.91221
0.91389 0.84331 0.90799 0.88357 0.91856
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.17 8.97 36.01 0.32 -0.84 16
2 C 0.40 3.86 7.20 -30.58 -0.22 3.64 16
3 O -0.45 -5.58 13.94 5.61 0.08 -5.50 16
4 C -0.17 -1.83 5.87 -105.00 -0.62 -2.44 16
5 C -0.08 -0.74 9.46 -39.16 -0.37 -1.11 16
6 C -0.12 -1.49 8.05 -39.26 -0.32 -1.81 16
7 C -0.08 -1.23 5.69 -104.87 -0.60 -1.82 16
8 C 0.56 10.92 7.65 -12.23 -0.09 10.82 16
9 O -0.54 -12.57 16.91 5.35 0.09 -12.48 16
10 N -0.60 -11.88 3.32 -171.41 -0.57 -12.45 16
11 C 0.10 1.54 4.97 -2.41 -0.01 1.53 16
12 C -0.12 -2.21 6.24 -24.46 -0.15 -2.36 16
13 C 0.25 5.72 0.85 -89.94 -0.08 5.65 16
14 O -0.58 -13.95 13.07 -35.23 -0.46 -14.41 16
15 C -0.54 -13.63 8.13 -34.44 -0.28 -13.91 16
16 H 0.07 1.69 7.78 -52.48 -0.41 1.28 16
17 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16
18 N -0.89 -23.28 10.96 55.43 0.61 -22.67 16
19 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16
20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16
23 C 0.10 2.41 5.24 -3.07 -0.02 2.39 16
24 C -0.08 -1.19 9.19 -39.25 -0.36 -1.55 16
25 C -0.03 -0.41 5.91 -104.21 -0.62 -1.02 16
26 C -0.13 -1.42 8.86 36.01 0.32 -1.10 16
27 H 0.09 0.40 7.96 -51.93 -0.41 -0.01 16
28 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16
29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.14 0.85 7.00 -52.49 -0.37 0.48 16
31 H 0.15 1.71 4.50 -52.48 -0.24 1.48 16
32 H 0.07 1.05 6.85 -51.93 -0.36 0.69 16
33 H 0.07 0.92 6.77 -51.93 -0.35 0.57 16
34 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16
35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16
36 H 0.38 9.43 7.45 45.56 0.34 9.77 16
37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16
38 H 0.07 1.80 7.81 -51.93 -0.41 1.39 16
39 H 0.07 1.73 7.92 -51.93 -0.41 1.32 16
40 H 0.14 2.00 7.81 -52.49 -0.41 1.59 16
41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
42 H 0.10 1.15 5.61 -51.93 -0.29 0.86 16
43 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16
LS Contribution 351.03 15.07 5.29 5.29
Total: -1.00 -30.18 351.03 -8.13 -38.32
By element:
Atomic # 1 Polarization: 16.06 SS G_CDS: -4.97 Total: 11.09 kcal
Atomic # 6 Polarization: 0.93 SS G_CDS: -3.18 Total: -2.25 kcal
Atomic # 7 Polarization: -35.16 SS G_CDS: 0.04 Total: -35.12 kcal
Atomic # 8 Polarization: -32.11 SS G_CDS: -0.29 Total: -32.40 kcal
Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -30.18 -8.13 -38.32 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000911525985.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.902 kcal
(2) G-P(sol) polarization free energy of solvation -30.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.085 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.220 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds