Wall clock time and date at job start Tue Mar 31 2020 11:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21218 * 119.99688 * 2 1 4 4 C 1.47391 * 120.00187 * 179.97438 * 2 1 3 5 5 C 1.39831 * 120.02722 * 355.67926 * 4 2 1 6 6 C 1.37752 * 119.97000 * 179.97438 * 5 4 2 7 7 C 1.39585 * 120.02967 * 0.02562 * 6 5 4 8 8 C 1.48070 * 119.97280 * 180.02562 * 7 6 5 9 9 O 1.21522 * 120.00179 * 203.80872 * 8 7 6 10 10 N 1.34777 * 120.00037 * 23.80122 * 8 7 6 11 11 C 1.47422 * 125.64570 * 5.36133 * 10 8 7 12 12 C 1.55131 * 104.71931 * 155.81450 * 11 10 8 13 13 C 1.55157 * 101.48466 * 37.30138 * 12 11 10 14 14 O 1.42894 * 110.72313 * 82.69154 * 13 12 11 15 15 C 1.50697 * 110.87108 * 205.89860 * 13 12 11 16 16 H 1.08004 * 120.00297 * 355.05436 * 15 13 12 17 17 C 1.37880 * 119.99997 * 175.06409 * 15 13 12 18 18 N 1.31513 * 119.99965 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99857 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47302 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46958 * 119.99871 * 19 17 15 22 22 H 1.48499 * 109.46936 * 239.99538 * 19 17 15 23 23 C 1.47016 * 125.65015 * 185.67258 * 10 8 7 24 24 C 1.39556 * 120.05702 * 359.97438 * 7 6 5 25 25 C 1.37796 * 120.02441 * 359.97438 * 24 7 6 26 26 C 1.50699 * 120.00943 * 180.02562 * 25 24 7 27 27 H 1.09007 * 109.47164 * 240.00149 * 1 2 3 28 28 H 1.08999 * 109.47629 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47025 * 120.00733 * 1 2 3 30 30 H 1.07997 * 120.01580 * 0.24640 * 5 4 2 31 31 H 1.08003 * 119.98093 * 179.97438 * 6 5 4 32 32 H 1.08996 * 110.37368 * 274.74712 * 11 10 8 33 33 H 1.09004 * 110.37031 * 37.07314 * 11 10 8 34 34 H 1.08991 * 111.19504 * 279.19281 * 12 11 10 35 35 H 1.09006 * 110.93803 * 155.29095 * 12 11 10 36 36 H 0.96709 * 114.00176 * 185.02570 * 14 13 12 37 37 H 0.97002 * 119.99888 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.88473 * 300.44046 * 23 10 8 39 39 H 1.09006 * 109.88368 * 61.44712 * 23 10 8 40 40 H 1.07996 * 119.98575 * 180.02562 * 24 7 6 41 41 H 1.09004 * 109.46624 * 97.67310 * 26 25 24 42 42 H 1.08998 * 109.47170 * 217.67073 * 26 25 24 43 43 H 1.09003 * 109.47291 * 337.67432 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2440 -1.2764 0.0006 5 6 1.5485 -2.4860 0.0923 6 6 2.2384 -3.6783 0.0922 7 6 3.6313 -3.6793 0.0011 8 6 4.3716 -4.9616 0.0005 9 8 5.5346 -4.9920 0.3516 10 7 3.7556 -6.0953 -0.3892 11 6 2.3918 -6.1856 -0.9418 12 6 2.3904 -7.4935 -1.7760 13 6 3.2770 -8.4188 -0.9013 14 8 2.5091 -9.0097 0.1489 15 6 3.9352 -9.4827 -1.7415 16 1 3.6933 -9.5688 -2.7906 17 6 4.8460 -10.3464 -1.1710 18 7 5.1408 -10.2414 0.1064 19 14 5.6613 -11.6657 -2.2124 20 1 5.1617 -11.5739 -3.6077 21 1 7.1329 -11.4677 -2.1990 22 1 5.3369 -13.0046 -1.6580 23 6 4.3299 -7.4472 -0.3277 24 6 4.3267 -2.4728 -0.0905 25 6 3.6388 -1.2789 -0.0917 26 6 4.3900 0.0237 -0.1912 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 0.4705 -2.4856 0.1588 31 1 1.7014 -4.6126 0.1635 32 1 1.6594 -6.2456 -0.1368 33 1 2.1841 -5.3279 -1.5816 34 1 2.8389 -7.3358 -2.7568 35 1 1.3812 -7.8944 -1.8702 36 1 3.0313 -9.5360 0.7698 37 1 5.7819 -10.8488 0.5077 38 1 5.2398 -7.4911 -0.9263 39 1 4.5539 -7.7082 0.7067 40 1 5.4043 -2.4750 -0.1614 41 1 4.3860 0.3673 -1.2257 42 1 3.9089 0.7698 0.4412 43 1 5.4183 -0.1237 0.1387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911525985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:59 Heat of formation + Delta-G solvation = -86.219577 kcal Electronic energy + Delta-G solvation = -26448.658219 eV Core-core repulsion = 22652.166643 eV Total energy + Delta-G solvation = -3796.491576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64661 -39.62202 -38.06971 -37.12663 -34.53381 -32.99307 -32.29118 -32.26619 -30.17153 -29.64301 -28.14131 -26.93483 -25.73308 -24.09707 -22.86605 -21.67567 -20.26177 -19.79993 -19.15235 -17.26186 -16.94550 -16.77441 -16.09641 -15.63148 -15.38536 -15.10847 -14.88467 -14.51243 -14.45314 -14.17511 -13.66654 -13.44933 -13.23233 -13.07559 -12.94914 -12.79577 -12.56688 -12.43646 -12.18562 -12.17252 -12.06086 -11.69530 -11.47919 -11.24565 -11.06955 -10.83930 -10.68205 -10.50883 -10.24855 -9.78168 -9.51600 -9.38968 -9.12553 -8.87303 -8.73257 -8.38766 -8.00977 -6.33840 -4.42436 0.25590 1.19078 2.00362 3.08025 3.17040 3.26436 3.29501 3.43262 3.76268 3.79721 4.23180 4.52840 4.62742 4.64924 4.77877 4.94345 4.99681 5.06625 5.12171 5.21437 5.29374 5.38346 5.50994 5.59614 5.63128 5.63683 5.73360 5.79006 5.86194 5.94779 6.02760 6.11554 6.24687 6.36551 6.40229 6.63508 6.67582 6.76670 6.86804 7.18622 7.27328 7.29599 7.67707 7.94203 8.06290 8.54177 8.62410 9.22373 9.32051 10.74049 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027823 B = 0.002961 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.103651 B = 9455.164652 C =10020.622274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.395 3.605 3 O -0.454 6.454 4 C -0.167 4.167 5 C -0.076 4.076 6 C -0.121 4.121 7 C -0.079 4.079 8 C 0.555 3.445 9 O -0.541 6.541 10 N -0.602 5.602 11 C 0.095 3.905 12 C -0.119 4.119 13 C 0.248 3.752 14 O -0.585 6.585 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.894 5.894 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.103 3.897 24 C -0.083 4.083 25 C -0.033 4.033 26 C -0.128 4.128 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.383 0.617 37 H 0.270 0.730 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.139 0.861 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 15.886 -0.511 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.275 3.725 3 O -0.330 6.330 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.139 4.139 7 C -0.083 4.083 8 C 0.343 3.657 9 O -0.421 6.421 10 N -0.334 5.334 11 C -0.027 4.027 12 C -0.157 4.157 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.018 4.018 24 C -0.102 4.102 25 C -0.033 4.033 26 C -0.184 4.184 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.233 0.767 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.157 0.843 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.932 16.679 -0.472 18.926 hybrid contribution 0.963 -1.298 -0.140 1.623 sum -7.969 15.381 -0.612 17.333 Atomic orbital electron populations 1.22265 0.93662 1.05113 1.04711 1.22559 0.91637 0.87543 0.70808 1.90457 1.71375 1.34616 1.36582 1.20443 0.94008 0.94930 1.07422 1.21348 1.00095 0.90995 0.96964 1.21925 0.93388 0.99587 0.99042 1.20349 0.94009 0.94030 0.99883 1.17982 0.86153 0.82763 0.78786 1.90760 1.16127 1.86024 1.49140 1.48719 1.16304 1.07802 1.60586 1.22692 0.84040 0.99181 0.96831 1.22832 1.01343 0.93312 0.98181 1.19508 0.85865 0.89082 0.84780 1.86101 1.40246 1.70314 1.42707 1.21523 1.24292 1.15260 0.96513 0.91441 1.25078 0.95613 0.97362 0.95241 1.69695 1.34352 1.38226 1.10981 0.86343 0.79077 0.81056 0.80414 1.19570 1.20757 1.20716 1.23092 0.98815 0.77844 1.02057 1.21180 1.00867 0.90095 0.98052 1.20156 0.92515 0.95813 0.94821 1.21192 0.99376 0.94332 1.03518 0.88747 0.89730 0.88673 0.84546 0.83384 0.91179 0.91336 0.90299 0.90321 0.76682 0.92002 0.91221 0.91389 0.84331 0.90799 0.88357 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 8.97 36.01 0.32 -0.84 16 2 C 0.40 3.86 7.20 -30.58 -0.22 3.64 16 3 O -0.45 -5.58 13.94 5.61 0.08 -5.50 16 4 C -0.17 -1.83 5.87 -105.00 -0.62 -2.44 16 5 C -0.08 -0.74 9.46 -39.16 -0.37 -1.11 16 6 C -0.12 -1.49 8.05 -39.26 -0.32 -1.81 16 7 C -0.08 -1.23 5.69 -104.87 -0.60 -1.82 16 8 C 0.56 10.92 7.65 -12.23 -0.09 10.82 16 9 O -0.54 -12.57 16.91 5.35 0.09 -12.48 16 10 N -0.60 -11.88 3.32 -171.41 -0.57 -12.45 16 11 C 0.10 1.54 4.97 -2.41 -0.01 1.53 16 12 C -0.12 -2.21 6.24 -24.46 -0.15 -2.36 16 13 C 0.25 5.72 0.85 -89.94 -0.08 5.65 16 14 O -0.58 -13.95 13.07 -35.23 -0.46 -14.41 16 15 C -0.54 -13.63 8.13 -34.44 -0.28 -13.91 16 16 H 0.07 1.69 7.78 -52.48 -0.41 1.28 16 17 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 18 N -0.89 -23.28 10.96 55.43 0.61 -22.67 16 19 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 C 0.10 2.41 5.24 -3.07 -0.02 2.39 16 24 C -0.08 -1.19 9.19 -39.25 -0.36 -1.55 16 25 C -0.03 -0.41 5.91 -104.21 -0.62 -1.02 16 26 C -0.13 -1.42 8.86 36.01 0.32 -1.10 16 27 H 0.09 0.40 7.96 -51.93 -0.41 -0.01 16 28 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.14 0.85 7.00 -52.49 -0.37 0.48 16 31 H 0.15 1.71 4.50 -52.48 -0.24 1.48 16 32 H 0.07 1.05 6.85 -51.93 -0.36 0.69 16 33 H 0.07 0.92 6.77 -51.93 -0.35 0.57 16 34 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.38 9.43 7.45 45.56 0.34 9.77 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.07 1.80 7.81 -51.93 -0.41 1.39 16 39 H 0.07 1.73 7.92 -51.93 -0.41 1.32 16 40 H 0.14 2.00 7.81 -52.49 -0.41 1.59 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.15 5.61 -51.93 -0.29 0.86 16 43 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -30.18 351.03 -8.13 -38.32 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.97 Total: 11.09 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -3.18 Total: -2.25 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.04 Total: -35.12 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.29 Total: -32.40 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.18 -8.13 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911525985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.902 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds