Wall clock time and date at job start Tue Mar 31 2020 11:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21218 * 119.99688 * 2 1 4 4 C 1.47391 * 120.00187 * 179.97438 * 2 1 3 5 5 C 1.39831 * 120.02722 * 355.67926 * 4 2 1 6 6 C 1.37752 * 119.97000 * 179.97438 * 5 4 2 7 7 C 1.39585 * 120.02967 * 0.02562 * 6 5 4 8 8 C 1.48070 * 119.97280 * 180.02562 * 7 6 5 9 9 O 1.21522 * 120.00179 * 203.80872 * 8 7 6 10 10 N 1.34777 * 120.00037 * 23.80122 * 8 7 6 11 11 C 1.47422 * 125.64570 * 5.36133 * 10 8 7 12 12 C 1.55131 * 104.71931 * 155.81450 * 11 10 8 13 13 C 1.55157 * 101.48466 * 37.30138 * 12 11 10 14 14 O 1.42894 * 110.72313 * 82.69154 * 13 12 11 15 15 C 1.50697 * 110.87108 * 205.89860 * 13 12 11 16 16 H 1.08004 * 120.00297 * 355.05436 * 15 13 12 17 17 C 1.37880 * 119.99997 * 175.06409 * 15 13 12 18 18 N 1.31513 * 119.99965 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99857 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47302 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46958 * 119.99871 * 19 17 15 22 22 H 1.48499 * 109.46936 * 239.99538 * 19 17 15 23 23 C 1.47016 * 125.65015 * 185.67258 * 10 8 7 24 24 C 1.39556 * 120.05702 * 359.97438 * 7 6 5 25 25 C 1.37796 * 120.02441 * 359.97438 * 24 7 6 26 26 C 1.50699 * 120.00943 * 180.02562 * 25 24 7 27 27 H 1.09007 * 109.47164 * 240.00149 * 1 2 3 28 28 H 1.08999 * 109.47629 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47025 * 120.00733 * 1 2 3 30 30 H 1.07997 * 120.01580 * 0.24640 * 5 4 2 31 31 H 1.08003 * 119.98093 * 179.97438 * 6 5 4 32 32 H 1.08996 * 110.37368 * 274.74712 * 11 10 8 33 33 H 1.09004 * 110.37031 * 37.07314 * 11 10 8 34 34 H 1.08991 * 111.19504 * 279.19281 * 12 11 10 35 35 H 1.09006 * 110.93803 * 155.29095 * 12 11 10 36 36 H 0.96709 * 114.00176 * 185.02570 * 14 13 12 37 37 H 0.97002 * 119.99888 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.88473 * 300.44046 * 23 10 8 39 39 H 1.09006 * 109.88368 * 61.44712 * 23 10 8 40 40 H 1.07996 * 119.98575 * 180.02562 * 24 7 6 41 41 H 1.09004 * 109.46624 * 97.67310 * 26 25 24 42 42 H 1.08998 * 109.47170 * 217.67073 * 26 25 24 43 43 H 1.09003 * 109.47291 * 337.67432 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2440 -1.2764 0.0006 5 6 1.5485 -2.4860 0.0923 6 6 2.2384 -3.6783 0.0922 7 6 3.6313 -3.6793 0.0011 8 6 4.3716 -4.9616 0.0005 9 8 5.5346 -4.9920 0.3516 10 7 3.7556 -6.0953 -0.3892 11 6 2.3918 -6.1856 -0.9418 12 6 2.3904 -7.4935 -1.7760 13 6 3.2770 -8.4188 -0.9013 14 8 2.5091 -9.0097 0.1489 15 6 3.9352 -9.4827 -1.7415 16 1 3.6933 -9.5688 -2.7906 17 6 4.8460 -10.3464 -1.1710 18 7 5.1408 -10.2414 0.1064 19 14 5.6613 -11.6657 -2.2124 20 1 5.1617 -11.5739 -3.6077 21 1 7.1329 -11.4677 -2.1990 22 1 5.3369 -13.0046 -1.6580 23 6 4.3299 -7.4472 -0.3277 24 6 4.3267 -2.4728 -0.0905 25 6 3.6388 -1.2789 -0.0917 26 6 4.3900 0.0237 -0.1912 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 0.4705 -2.4856 0.1588 31 1 1.7014 -4.6126 0.1635 32 1 1.6594 -6.2456 -0.1368 33 1 2.1841 -5.3279 -1.5816 34 1 2.8389 -7.3358 -2.7568 35 1 1.3812 -7.8944 -1.8702 36 1 3.0313 -9.5360 0.7698 37 1 5.7819 -10.8488 0.5077 38 1 5.2398 -7.4911 -0.9263 39 1 4.5539 -7.7082 0.7067 40 1 5.4043 -2.4750 -0.1614 41 1 4.3860 0.3673 -1.2257 42 1 3.9089 0.7698 0.4412 43 1 5.4183 -0.1237 0.1387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911525985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:58 Heat of formation + Delta-G solvation = -106.325421 kcal Electronic energy + Delta-G solvation = -26449.530074 eV Core-core repulsion = 22652.166643 eV Total energy + Delta-G solvation = -3797.363431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75561 -40.84245 -39.31748 -38.60795 -36.23660 -34.24181 -33.96593 -33.24205 -31.70458 -30.37826 -29.75221 -27.97643 -27.31302 -25.51179 -24.15256 -22.68251 -21.51489 -21.16596 -20.53845 -19.12109 -18.16233 -17.77676 -17.46701 -17.10775 -16.66942 -16.40670 -16.13967 -16.03290 -15.43705 -15.17010 -14.93659 -14.85052 -14.71022 -14.40135 -14.20767 -14.10226 -13.63174 -13.46797 -13.33002 -13.23026 -12.97629 -12.93033 -12.88570 -12.86249 -12.56313 -12.36596 -12.26328 -12.09586 -11.97955 -11.19729 -11.16740 -10.67336 -10.46566 -10.28901 -10.16206 -9.82204 -9.63805 -8.28501 -6.43751 -0.71834 0.25530 1.08696 1.38560 1.42487 1.52582 1.82349 1.95261 2.36654 2.70621 2.98713 3.04085 3.39128 3.64254 3.75994 3.77797 4.02803 4.11041 4.15475 4.18014 4.27342 4.32749 4.53940 4.55884 4.60125 4.66063 4.72222 4.75348 4.78842 4.86465 4.99577 5.05583 5.10393 5.13973 5.18227 5.23040 5.28846 5.35483 5.47770 5.49982 5.72317 5.73320 6.04434 6.51840 6.55518 6.64686 7.00429 7.26041 7.33651 8.77590 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027823 B = 0.002961 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.103651 B = 9455.164652 C =10020.622274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.396 3.604 3 O -0.485 6.485 4 C -0.164 4.164 5 C -0.052 4.052 6 C -0.117 4.117 7 C -0.101 4.101 8 C 0.550 3.450 9 O -0.594 6.594 10 N -0.606 5.606 11 C 0.099 3.901 12 C -0.114 4.114 13 C 0.235 3.765 14 O -0.584 6.584 15 C -0.556 4.556 16 H 0.067 0.933 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.961 3.039 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.120 3.880 24 C -0.096 4.096 25 C -0.043 4.043 26 C -0.124 4.124 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.188 0.812 31 H 0.162 0.838 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.375 0.625 37 H 0.269 0.731 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.225 17.269 -1.379 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.277 3.723 3 O -0.363 6.363 4 C -0.165 4.165 5 C -0.069 4.069 6 C -0.135 4.135 7 C -0.104 4.104 8 C 0.340 3.660 9 O -0.476 6.476 10 N -0.337 5.337 11 C -0.021 4.021 12 C -0.152 4.152 13 C 0.194 3.806 14 O -0.391 6.391 15 C -0.594 4.594 16 H 0.085 0.915 17 C -0.176 4.176 18 N -0.555 5.555 19 Si 0.787 3.213 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.003 4.003 24 C -0.115 4.115 25 C -0.044 4.044 26 C -0.180 4.180 27 H 0.137 0.863 28 H 0.105 0.895 29 H 0.138 0.862 30 H 0.205 0.795 31 H 0.179 0.821 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.224 0.776 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.675 18.071 -1.360 22.115 hybrid contribution 2.103 -1.647 0.147 2.675 sum -10.572 16.425 -1.214 19.570 Atomic orbital electron populations 1.22319 0.89743 1.06182 1.06898 1.23092 0.93521 0.86228 0.69468 1.90464 1.72435 1.35413 1.37986 1.20852 0.93403 0.96593 1.05692 1.21795 1.02268 0.88996 0.93879 1.22061 0.91661 1.01303 0.98442 1.20035 0.95369 0.91538 1.03475 1.18768 0.85820 0.84021 0.77342 1.90716 1.18655 1.86948 1.51323 1.48743 1.17706 1.06403 1.60830 1.22942 0.82231 0.99337 0.97636 1.22837 1.01309 0.93304 0.97704 1.19690 0.86881 0.89095 0.84914 1.86086 1.40100 1.70216 1.42741 1.21878 1.24662 1.16021 0.96863 0.91458 1.25803 0.96238 0.99305 0.96223 1.69801 1.34717 1.38825 1.12138 0.85452 0.77708 0.78825 0.79337 1.18812 1.21254 1.20242 1.22587 0.97992 0.80593 0.99118 1.21086 1.00329 0.90747 0.99309 1.20313 0.93764 0.95233 0.95065 1.21162 0.99436 0.93754 1.03685 0.86306 0.89514 0.86229 0.79486 0.82128 0.88969 0.87496 0.90047 0.88375 0.77561 0.92142 0.95061 0.94741 0.86049 0.90409 0.88671 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.20 8.97 71.24 0.64 -0.56 16 2 C 0.40 6.27 7.20 28.10 0.20 6.47 16 3 O -0.48 -10.88 13.94 -2.84 -0.04 -10.92 16 4 C -0.16 -3.04 5.87 -20.11 -0.12 -3.15 16 5 C -0.05 -0.75 9.46 22.54 0.21 -0.53 16 6 C -0.12 -2.46 8.05 22.48 0.18 -2.28 16 7 C -0.10 -3.05 5.69 -20.02 -0.11 -3.17 16 8 C 0.55 22.28 7.65 86.85 0.66 22.95 16 9 O -0.59 -29.48 16.91 -3.78 -0.06 -29.54 16 10 N -0.61 -24.12 3.32 -814.51 -2.71 -26.83 16 11 C 0.10 2.95 4.97 86.93 0.43 3.38 16 12 C -0.11 -4.02 6.24 32.06 0.20 -3.82 16 13 C 0.23 10.92 0.85 -10.35 -0.01 10.91 16 14 O -0.58 -27.98 13.07 -148.98 -1.95 -29.93 16 15 C -0.56 -28.58 8.13 25.60 0.21 -28.37 16 16 H 0.07 3.37 7.78 -2.91 -0.02 3.35 16 17 C 0.03 1.31 5.28 84.66 0.45 1.76 16 18 N -0.92 -49.42 10.96 21.45 0.24 -49.18 16 19 Si 0.96 41.81 29.54 68.60 2.03 43.84 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 C 0.12 5.88 5.24 86.73 0.45 6.33 16 24 C -0.10 -2.76 9.19 22.48 0.21 -2.55 16 25 C -0.04 -1.03 5.91 -19.60 -0.12 -1.15 16 26 C -0.12 -2.72 8.86 71.24 0.63 -2.09 16 27 H 0.12 0.23 7.96 -2.38 -0.02 0.21 16 28 H 0.09 0.58 8.12 -2.39 -0.02 0.56 16 29 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.19 0.85 7.00 -2.91 -0.02 0.83 16 31 H 0.16 2.97 4.50 -2.91 -0.01 2.96 16 32 H 0.09 2.38 6.85 -2.39 -0.02 2.36 16 33 H 0.11 2.40 6.77 -2.39 -0.02 2.39 16 34 H 0.08 2.82 8.04 -2.39 -0.02 2.80 16 35 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 36 H 0.38 19.05 7.45 -74.05 -0.55 18.49 16 37 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 38 H 0.03 1.72 7.81 -2.39 -0.02 1.70 16 39 H 0.03 1.87 7.92 -2.38 -0.02 1.85 16 40 H 0.12 3.79 7.81 -2.91 -0.02 3.77 16 41 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.09 2.17 5.61 -2.39 -0.01 2.16 16 43 H 0.06 1.35 8.03 -2.39 -0.02 1.33 16 Total: -1.00 -71.05 351.03 2.13 -68.93 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.50 Total: 29.52 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 4.12 Total: 4.12 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -2.47 Total: -76.01 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -2.05 Total: -70.39 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -71.05 2.13 -68.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911525985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.399 kcal (2) G-P(sol) polarization free energy of solvation -71.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds