Wall clock time and date at job start Tue Mar 31 2020 11:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48498 * 109.47281 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47252 * 29.99482 * 3 2 1 6 6 H 1.48498 * 109.47373 * 149.99332 * 3 2 1 7 7 C 1.37877 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99815 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00093 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46974 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99832 * 89.99360 * 10 9 7 12 12 O 1.21292 * 120.00186 * 5.22632 * 11 10 9 13 13 C 1.50701 * 119.99986 * 185.21826 * 11 10 9 14 14 O 1.45205 * 109.47234 * 185.13239 * 13 11 10 15 15 C 1.34226 * 116.99929 * 180.02562 * 14 13 11 16 16 O 1.20829 * 120.00116 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99907 * 179.72232 * 15 14 13 18 18 C 1.53000 * 109.47269 * 179.97438 * 17 15 14 19 19 C 1.53001 * 117.50208 * 243.62218 * 18 17 15 20 20 C 1.52997 * 59.99977 * 252.50848 * 19 18 17 21 21 C 1.39916 * 119.99982 * 269.99880 * 10 9 7 22 22 C 1.38871 * 120.07433 * 112.47582 * 21 10 9 23 23 C 1.38110 * 119.93006 * 179.74607 * 22 21 10 24 24 C 1.38283 * 120.07221 * 0.53091 * 23 22 21 25 25 C 1.38283 * 120.14020 * 359.74177 * 24 23 22 26 26 C 1.38115 * 120.06811 * 359.97438 * 25 24 23 27 27 H 0.97002 * 119.99854 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47091 * 59.99558 * 9 7 2 29 29 H 1.09004 * 109.46791 * 299.99381 * 9 7 2 30 30 H 1.09001 * 109.46949 * 65.12775 * 13 11 10 31 31 H 1.09001 * 109.47009 * 305.13138 * 13 11 10 32 32 H 1.08994 * 109.47342 * 299.99803 * 17 15 14 33 33 H 1.09007 * 109.47431 * 59.99807 * 17 15 14 34 34 H 1.09001 * 115.54943 * 29.33665 * 18 17 15 35 35 H 1.08999 * 117.49898 * 359.97438 * 19 18 17 36 36 H 1.08999 * 117.49953 * 145.02118 * 19 18 17 37 37 H 1.08997 * 117.50180 * 252.50520 * 20 19 18 38 38 H 1.09007 * 117.49701 * 107.49057 * 20 19 18 39 39 H 1.08005 * 120.03241 * 0.02562 * 22 21 10 40 40 H 1.08005 * 119.96306 * 180.27014 * 23 22 21 41 41 H 1.07993 * 119.93108 * 179.72481 * 24 23 22 42 42 H 1.07996 * 119.96711 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.03402 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.2249 -3.2113 -1.1645 12 8 4.1145 -2.6120 -2.2132 13 6 4.6138 -4.6673 -1.1661 14 8 4.9165 -5.0860 -2.5231 15 6 5.2822 -6.3654 -2.6988 16 8 5.3477 -7.1108 -1.7501 17 6 5.6056 -6.8737 -4.0801 18 6 5.9908 -8.3524 -4.0022 19 6 7.4168 -8.7333 -4.4053 20 6 6.2428 -9.0872 -5.3203 21 6 4.2327 -3.2340 1.2145 22 6 3.4342 -4.3070 1.5879 23 6 3.6699 -4.9584 2.7827 24 6 4.6928 -4.5363 3.6120 25 6 5.4861 -3.4645 3.2458 26 6 5.2592 -2.8126 2.0495 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6799 0.8910 29 1 3.8752 -0.6804 -0.8889 30 1 3.7887 -5.2641 -0.7772 31 1 5.4928 -4.8093 -0.5374 32 1 4.7332 -6.7586 -4.7231 33 1 6.4382 -6.3030 -4.4916 34 1 5.5288 -8.9165 -3.1920 35 1 8.0804 -7.9304 -4.7264 36 1 7.8933 -9.5480 -3.8601 37 1 5.9470 -10.1347 -5.3771 38 1 6.1342 -8.5172 -6.2431 39 1 2.6326 -4.6347 0.9425 40 1 3.0520 -5.7958 3.0716 41 1 4.8722 -5.0445 4.5478 42 1 6.2844 -3.1374 3.8954 43 1 5.8794 -1.9759 1.7638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914811175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:36 Heat of formation + Delta-G solvation = -58.979370 kcal Electronic energy + Delta-G solvation = -25997.571817 eV Core-core repulsion = 22202.261465 eV Total energy + Delta-G solvation = -3795.310352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71467 -39.90467 -38.28577 -37.63750 -36.23660 -35.01206 -32.69930 -30.92742 -30.52557 -29.77966 -28.84833 -26.99799 -23.03286 -22.68244 -22.61172 -22.18148 -21.76981 -20.26079 -19.26408 -17.91093 -17.46135 -17.06306 -16.73114 -16.45793 -16.02923 -15.59878 -15.22803 -15.02746 -14.46367 -14.29617 -14.22947 -13.98577 -13.47675 -13.24924 -13.08394 -12.63780 -12.47496 -12.40309 -12.38137 -11.87438 -11.82410 -11.76788 -11.41034 -11.20683 -10.91938 -10.73613 -10.68922 -10.63123 -10.56448 -10.28536 -10.27122 -9.64632 -9.56618 -8.78507 -8.72511 -8.63231 -7.84947 -6.14669 -4.14744 1.44180 1.55347 2.14859 2.36301 2.98442 3.25397 3.30904 3.32719 3.46132 3.63811 3.92272 4.34028 4.34345 4.50729 4.60908 4.67869 4.78627 5.05960 5.07749 5.10606 5.18309 5.20166 5.21900 5.26801 5.29319 5.34136 5.36604 5.58406 5.58850 5.72362 5.80675 5.89414 5.96029 6.16441 6.35592 6.48616 6.58386 6.64633 6.65565 6.81908 6.97017 7.18710 7.49514 7.67690 8.00758 8.36276 8.63540 8.87075 9.43687 10.98410 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.003577 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.771572 B = 7826.240350 C = 9326.114500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.219 3.781 10 N -0.551 5.551 11 C 0.519 3.481 12 O -0.505 6.505 13 C 0.052 3.948 14 O -0.332 6.332 15 C 0.463 3.537 16 O -0.508 6.508 17 C -0.082 4.082 18 C -0.149 4.149 19 C -0.178 4.178 20 C -0.176 4.176 21 C 0.150 3.850 22 C -0.121 4.121 23 C -0.106 4.106 24 C -0.129 4.129 25 C -0.109 4.109 26 C -0.124 4.124 27 H 0.266 0.734 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.145 -15.170 -1.208 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.100 3.900 10 N -0.280 5.280 11 C 0.306 3.694 12 O -0.379 6.379 13 C -0.025 4.025 14 O -0.247 6.247 15 C 0.306 3.694 16 O -0.396 6.396 17 C -0.120 4.120 18 C -0.167 4.167 19 C -0.215 4.215 20 C -0.212 4.212 21 C 0.059 3.941 22 C -0.141 4.141 23 C -0.124 4.124 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.144 4.144 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.915 -14.863 -1.530 20.417 hybrid contribution 0.103 0.929 0.331 0.991 sum 14.018 -13.934 -1.198 19.802 Atomic orbital electron populations 1.69883 1.06169 1.27128 1.49959 1.24809 0.94778 0.98896 0.94246 0.86873 0.80241 0.83788 0.78984 1.19716 1.20888 1.19003 1.21238 0.88743 0.95080 1.52084 0.90577 1.19864 0.96083 0.75964 0.98049 1.45491 1.64216 1.15998 1.02292 1.19758 0.78260 0.87307 0.84120 1.90723 1.49849 1.67106 1.30253 1.22882 1.03134 0.94911 0.81590 1.86542 1.77734 1.28875 1.31542 1.23680 0.73255 0.79945 0.92530 1.90656 1.48775 1.57003 1.43185 1.20916 1.04849 0.94798 0.91403 1.22111 1.00343 0.94272 0.99987 1.23079 0.91066 1.03816 1.03534 1.23014 1.02909 1.01225 0.94100 1.17752 0.94489 0.93819 0.88074 1.21414 0.98313 0.96898 0.97439 1.21012 0.97773 0.99715 0.93944 1.21111 0.96386 0.97553 0.99691 1.20973 0.99752 0.96046 0.96041 1.21271 0.97212 1.00795 0.95114 0.92410 0.94600 0.93799 0.88087 0.88643 0.86908 0.87410 0.86181 0.88581 0.88592 0.88460 0.88439 0.85639 0.85809 0.86143 0.85907 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 8 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 9 C 0.22 5.33 4.22 -5.19 -0.02 5.31 16 10 N -0.55 -11.56 2.51 -114.74 -0.29 -11.84 16 11 C 0.52 10.85 7.65 -10.98 -0.08 10.77 16 12 O -0.51 -12.43 16.06 -14.06 -0.23 -12.65 16 13 C 0.05 0.87 4.46 36.01 0.16 1.03 16 14 O -0.33 -5.44 9.76 -45.88 -0.45 -5.88 16 15 C 0.46 6.37 7.96 36.00 0.29 6.65 16 16 O -0.51 -7.91 15.31 -18.75 -0.29 -8.20 16 17 C -0.08 -0.79 6.09 -27.89 -0.17 -0.96 16 18 C -0.15 -1.33 5.42 -90.62 -0.49 -1.82 16 19 C -0.18 -1.34 10.18 -26.73 -0.27 -1.62 16 20 C -0.18 -1.21 10.25 -26.73 -0.27 -1.49 16 21 C 0.15 2.67 4.43 -83.70 -0.37 2.29 16 22 C -0.12 -1.96 8.45 -39.39 -0.33 -2.29 16 23 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 24 C -0.13 -1.56 10.04 -39.55 -0.40 -1.96 16 25 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 26 C -0.12 -1.90 9.66 -39.39 -0.38 -2.28 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 28 H 0.04 0.84 6.90 -51.93 -0.36 0.48 16 29 H 0.04 1.12 6.79 -51.93 -0.35 0.77 16 30 H 0.10 1.60 6.88 -51.93 -0.36 1.24 16 31 H 0.10 1.44 7.86 -51.93 -0.41 1.03 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.11 0.86 7.87 -51.93 -0.41 0.46 16 34 H 0.12 1.24 7.30 -51.93 -0.38 0.87 16 35 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.13 2.07 7.55 -52.48 -0.40 1.67 16 40 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -34.58 370.47 -9.19 -43.78 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.05 Total: 2.51 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.58 Total: -3.39 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.49 Total: -38.39 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.96 Total: -26.73 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.58 -9.19 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914811175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.202 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds