Wall clock time and date at job start Tue Mar 31 2020 11:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48498 * 109.47281 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47252 * 29.99482 * 3 2 1 6 6 H 1.48498 * 109.47373 * 149.99332 * 3 2 1 7 7 C 1.37877 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99815 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00093 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46974 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99832 * 89.99360 * 10 9 7 12 12 O 1.21292 * 120.00186 * 5.22632 * 11 10 9 13 13 C 1.50701 * 119.99986 * 185.21826 * 11 10 9 14 14 O 1.45205 * 109.47234 * 185.13239 * 13 11 10 15 15 C 1.34226 * 116.99929 * 180.02562 * 14 13 11 16 16 O 1.20829 * 120.00116 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99907 * 179.72232 * 15 14 13 18 18 C 1.53000 * 109.47269 * 179.97438 * 17 15 14 19 19 C 1.53001 * 117.50208 * 243.62218 * 18 17 15 20 20 C 1.52997 * 59.99977 * 252.50848 * 19 18 17 21 21 C 1.39916 * 119.99982 * 269.99880 * 10 9 7 22 22 C 1.38871 * 120.07433 * 112.47582 * 21 10 9 23 23 C 1.38110 * 119.93006 * 179.74607 * 22 21 10 24 24 C 1.38283 * 120.07221 * 0.53091 * 23 22 21 25 25 C 1.38283 * 120.14020 * 359.74177 * 24 23 22 26 26 C 1.38115 * 120.06811 * 359.97438 * 25 24 23 27 27 H 0.97002 * 119.99854 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47091 * 59.99558 * 9 7 2 29 29 H 1.09004 * 109.46791 * 299.99381 * 9 7 2 30 30 H 1.09001 * 109.46949 * 65.12775 * 13 11 10 31 31 H 1.09001 * 109.47009 * 305.13138 * 13 11 10 32 32 H 1.08994 * 109.47342 * 299.99803 * 17 15 14 33 33 H 1.09007 * 109.47431 * 59.99807 * 17 15 14 34 34 H 1.09001 * 115.54943 * 29.33665 * 18 17 15 35 35 H 1.08999 * 117.49898 * 359.97438 * 19 18 17 36 36 H 1.08999 * 117.49953 * 145.02118 * 19 18 17 37 37 H 1.08997 * 117.50180 * 252.50520 * 20 19 18 38 38 H 1.09007 * 117.49701 * 107.49057 * 20 19 18 39 39 H 1.08005 * 120.03241 * 0.02562 * 22 21 10 40 40 H 1.08005 * 119.96306 * 180.27014 * 23 22 21 41 41 H 1.07993 * 119.93108 * 179.72481 * 24 23 22 42 42 H 1.07996 * 119.96711 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.03402 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.2249 -3.2113 -1.1645 12 8 4.1145 -2.6120 -2.2132 13 6 4.6138 -4.6673 -1.1661 14 8 4.9165 -5.0860 -2.5231 15 6 5.2822 -6.3654 -2.6988 16 8 5.3477 -7.1108 -1.7501 17 6 5.6056 -6.8737 -4.0801 18 6 5.9908 -8.3524 -4.0022 19 6 7.4168 -8.7333 -4.4053 20 6 6.2428 -9.0872 -5.3203 21 6 4.2327 -3.2340 1.2145 22 6 3.4342 -4.3070 1.5879 23 6 3.6699 -4.9584 2.7827 24 6 4.6928 -4.5363 3.6120 25 6 5.4861 -3.4645 3.2458 26 6 5.2592 -2.8126 2.0495 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6799 0.8910 29 1 3.8752 -0.6804 -0.8889 30 1 3.7887 -5.2641 -0.7772 31 1 5.4928 -4.8093 -0.5374 32 1 4.7332 -6.7586 -4.7231 33 1 6.4382 -6.3030 -4.4916 34 1 5.5288 -8.9165 -3.1920 35 1 8.0804 -7.9304 -4.7264 36 1 7.8933 -9.5480 -3.8601 37 1 5.9470 -10.1347 -5.3771 38 1 6.1342 -8.5172 -6.2431 39 1 2.6326 -4.6347 0.9425 40 1 3.0520 -5.7958 3.0716 41 1 4.8722 -5.0445 4.5478 42 1 6.2844 -3.1374 3.8954 43 1 5.8794 -1.9759 1.7638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914811175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:36 Heat of formation + Delta-G solvation = -78.043948 kcal Electronic energy + Delta-G solvation = -25998.398519 eV Core-core repulsion = 22202.261465 eV Total energy + Delta-G solvation = -3796.137054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99926 -41.24243 -39.59843 -38.45815 -37.39022 -36.62463 -34.81702 -32.15998 -31.65433 -31.14655 -30.14321 -28.65786 -24.69507 -23.94970 -23.37916 -23.24241 -22.93638 -21.11357 -20.71061 -19.20054 -19.09153 -18.77761 -18.01447 -17.62119 -17.33396 -17.03744 -16.63046 -16.21934 -15.84005 -15.48984 -15.37101 -15.01900 -14.85776 -14.58533 -14.36205 -14.26488 -13.82886 -13.80979 -13.54519 -13.49355 -13.22453 -12.61573 -12.48244 -12.38157 -12.32680 -12.26720 -12.03653 -11.96882 -11.78982 -11.76628 -11.30515 -11.17632 -10.92063 -10.87523 -10.21125 -9.88414 -9.33612 -8.38254 -6.44955 0.27258 0.44980 1.05011 1.13345 1.31357 1.34745 1.36200 1.43061 2.18465 2.27551 2.79556 2.88976 2.95675 3.24335 3.53696 3.68079 3.83002 3.86005 4.01078 4.04381 4.06916 4.11846 4.28224 4.39283 4.52178 4.54700 4.59967 4.62181 4.64807 4.75822 4.80871 4.82403 5.03945 5.09736 5.18749 5.28198 5.28800 5.33480 5.34873 5.48082 5.58026 5.61718 5.98054 6.14412 6.40493 6.55188 6.57666 6.98186 7.19482 8.78522 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.003577 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.771572 B = 7826.240350 C = 9326.114500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.238 1.238 7 C -0.541 4.541 8 H 0.029 0.971 9 C 0.229 3.771 10 N -0.552 5.552 11 C 0.513 3.487 12 O -0.555 6.555 13 C 0.067 3.933 14 O -0.349 6.349 15 C 0.461 3.539 16 O -0.529 6.529 17 C -0.076 4.076 18 C -0.168 4.168 19 C -0.178 4.178 20 C -0.160 4.160 21 C 0.111 3.889 22 C -0.140 4.140 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.101 4.101 26 C -0.132 4.132 27 H 0.270 0.730 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.829 -15.683 0.149 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.161 1.161 7 C -0.580 4.580 8 H 0.048 0.952 9 C 0.109 3.891 10 N -0.280 5.280 11 C 0.301 3.699 12 O -0.433 6.433 13 C -0.010 4.010 14 O -0.265 6.265 15 C 0.306 3.694 16 O -0.418 6.418 17 C -0.113 4.113 18 C -0.186 4.186 19 C -0.215 4.215 20 C -0.197 4.197 21 C 0.021 3.979 22 C -0.160 4.160 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.152 4.152 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.166 0.834 41 H 0.178 0.822 42 H 0.178 0.822 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.622 -15.425 -0.134 22.677 hybrid contribution -0.772 0.918 -0.011 1.199 sum 15.850 -14.508 -0.144 21.488 Atomic orbital electron populations 1.70035 1.08188 1.28510 1.51344 1.25811 0.95701 1.03259 0.93552 0.85747 0.79912 0.78254 0.79326 1.19622 1.19797 1.16111 1.21435 0.91059 0.93508 1.51974 0.95232 1.19519 0.93217 0.78459 0.97952 1.45382 1.63568 1.15088 1.03919 1.20461 0.77235 0.88787 0.83439 1.90675 1.52242 1.68492 1.31842 1.22640 1.03943 0.91911 0.82507 1.86564 1.78224 1.30597 1.31113 1.24567 0.72168 0.78694 0.93981 1.90637 1.49760 1.57116 1.44285 1.21086 1.06157 0.95272 0.88744 1.22024 1.01821 0.93737 1.01067 1.23190 0.90684 1.04133 1.03472 1.23118 1.01501 1.01545 0.93507 1.18036 0.96849 0.95252 0.87734 1.21414 0.98262 0.97516 0.98797 1.21339 0.98461 0.99943 0.92718 1.21607 0.94627 0.96728 1.00397 1.21409 1.00203 0.95277 0.95036 1.21442 0.96653 1.01325 0.95736 0.92065 0.92922 0.94976 0.87655 0.86812 0.85471 0.85409 0.88114 0.87649 0.88372 0.87675 0.87073 0.87592 0.83419 0.82174 0.82222 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.02 0.91 5.47 84.66 0.46 1.38 16 3 Si 0.95 44.24 27.47 68.60 1.88 46.12 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.24 -10.00 6.54 99.48 0.65 -9.34 16 7 C -0.54 -32.32 9.94 25.60 0.25 -32.07 16 8 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 9 C 0.23 11.42 4.22 85.63 0.36 11.78 16 10 N -0.55 -24.01 2.51 -635.30 -1.59 -25.60 16 11 C 0.51 22.47 7.65 87.66 0.67 23.14 16 12 O -0.55 -28.74 16.06 15.68 0.25 -28.49 16 13 C 0.07 2.32 4.46 71.24 0.32 2.64 16 14 O -0.35 -11.73 9.76 -45.04 -0.44 -12.17 16 15 C 0.46 12.73 7.96 71.23 0.57 13.29 16 16 O -0.53 -16.59 15.31 21.95 0.34 -16.26 16 17 C -0.08 -1.37 6.09 29.85 0.18 -1.19 16 18 C -0.17 -2.84 5.42 -10.79 -0.06 -2.90 16 19 C -0.18 -2.38 10.18 30.59 0.31 -2.06 16 20 C -0.16 -1.88 10.25 30.59 0.31 -1.57 16 21 C 0.11 3.99 4.43 38.15 0.17 4.16 16 22 C -0.14 -4.62 8.45 22.39 0.19 -4.43 16 23 C -0.11 -2.63 10.04 22.25 0.22 -2.40 16 24 C -0.12 -2.34 10.04 22.29 0.22 -2.11 16 25 C -0.10 -2.17 10.04 22.25 0.22 -1.95 16 26 C -0.13 -3.81 9.66 22.39 0.22 -3.60 16 27 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.05 2.44 6.90 -2.39 -0.02 2.42 16 29 H 0.03 1.68 6.79 -2.38 -0.02 1.66 16 30 H 0.11 3.53 6.88 -2.39 -0.02 3.51 16 31 H 0.11 3.48 7.86 -2.39 -0.02 3.46 16 32 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.13 1.82 7.87 -2.38 -0.02 1.80 16 34 H 0.10 2.10 7.30 -2.39 -0.02 2.09 16 35 H 0.11 1.21 8.03 -2.39 -0.02 1.19 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.11 1.02 8.14 -2.38 -0.02 1.01 16 39 H 0.11 3.77 7.55 -2.91 -0.02 3.75 16 40 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 41 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 43 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -79.98 370.47 6.32 -73.66 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.95 Total: 19.97 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 4.63 Total: 2.11 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.29 Total: -84.96 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: 0.15 Total: -56.91 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Total: -79.98 6.32 -73.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914811175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.381 kcal (2) G-P(sol) polarization free energy of solvation -79.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds