Wall clock time and date at job start Tue Mar 31 2020 11:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99704 * 2 1 4 4 H 1.48499 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47342 * 299.99826 * 3 2 1 6 6 H 1.48502 * 109.47271 * 60.00167 * 3 2 1 7 7 C 1.37874 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00382 * 180.28031 * 7 2 1 9 9 C 1.50705 * 119.99643 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47014 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.47188 * 179.97438 * 11 10 9 13 13 C 1.34232 * 117.00188 * 180.02562 * 12 11 10 14 14 O 1.20825 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99756 * 180.02562 * 13 12 11 16 16 H 1.08995 * 110.86466 * 59.29548 * 15 13 12 17 17 C 1.54629 * 110.96621 * 295.50189 * 15 13 12 18 18 C 1.51348 * 104.16515 * 217.11075 * 17 15 13 19 19 O 1.21293 * 124.92660 * 196.24741 * 18 17 15 20 20 N 1.34415 * 110.12994 * 16.20627 * 18 17 15 21 21 C 1.39924 * 124.35009 * 180.45456 * 20 18 17 22 22 C 1.38878 * 120.06869 * 353.97823 * 21 20 18 23 23 C 1.38119 * 119.92449 * 179.74340 * 22 21 20 24 24 C 1.38273 * 120.07182 * 0.52758 * 23 22 21 25 25 C 1.38284 * 120.14601 * 359.72308 * 24 23 22 26 26 C 1.38119 * 120.06578 * 0.02562 * 25 24 23 27 27 C 1.46765 * 111.30176 * 0.43843 * 20 18 17 28 28 H 0.96998 * 120.00091 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47239 * 299.99779 * 9 7 2 30 30 H 1.08998 * 109.47189 * 60.00513 * 9 7 2 31 31 H 1.08997 * 109.47347 * 300.00247 * 10 9 7 32 32 H 1.08998 * 109.46991 * 60.00120 * 10 9 7 33 33 H 1.08997 * 109.47221 * 300.00269 * 11 10 9 34 34 H 1.08998 * 109.47189 * 60.00186 * 11 10 9 35 35 H 1.08997 * 110.48760 * 335.76325 * 17 15 13 36 36 H 1.08996 * 110.48375 * 98.41323 * 17 15 13 37 37 H 1.07993 * 120.03763 * 359.97373 * 22 21 20 38 38 H 1.08001 * 119.96170 * 180.25493 * 23 22 21 39 39 H 1.08006 * 119.93194 * 179.75013 * 24 23 22 40 40 H 1.07994 * 119.96712 * 179.97438 * 25 24 23 41 41 H 1.07996 * 120.03275 * 179.97438 * 26 25 24 42 42 H 1.09003 * 110.24242 * 223.98714 * 27 20 18 43 43 H 1.09000 * 110.32328 * 102.02296 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 8 2.4239 -6.0907 -0.0018 13 6 1.9109 -7.3311 -0.0029 14 8 0.7131 -7.4894 -0.0029 15 6 2.8290 -8.5261 -0.0030 16 1 3.4773 -8.5177 0.8731 17 6 3.6600 -8.5853 -1.3057 18 6 3.7481 -10.0628 -1.6220 19 8 4.5373 -10.5613 -2.3965 20 7 2.8253 -10.7421 -0.9194 21 6 2.6515 -12.1292 -0.9783 22 6 3.3753 -12.8829 -1.8932 23 6 3.2054 -14.2526 -1.9451 24 6 2.3079 -14.8722 -1.0951 25 6 1.5819 -14.1240 -0.1866 26 6 1.7510 -12.7546 -0.1260 27 6 2.0235 -9.8420 -0.0822 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6241 -2.5567 -0.8903 31 1 2.8720 -3.6043 -0.8905 32 1 2.8719 -3.6043 0.8894 33 1 0.8534 -5.0450 0.8885 34 1 0.8541 -5.0445 -0.8914 35 1 3.1494 -8.0533 -2.1084 36 1 4.6543 -8.1695 -1.1431 37 1 4.0728 -12.3990 -2.5606 38 1 3.7709 -14.8398 -2.6535 39 1 2.1739 -15.9430 -1.1405 40 1 0.8814 -14.6109 0.4757 41 1 1.1834 -12.1707 0.5834 42 1 1.8962 -10.2666 0.9136 43 1 1.0518 -9.6624 -0.5422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914996733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:29 Heat of formation + Delta-G solvation = -99.065439 kcal Electronic energy + Delta-G solvation = -24994.003153 eV Core-core repulsion = 21196.954539 eV Total energy + Delta-G solvation = -3797.048614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75658 -40.33391 -38.87204 -37.25146 -36.43473 -34.13485 -33.70852 -31.76254 -31.27645 -29.67821 -28.33623 -27.26661 -24.94730 -23.44916 -23.19871 -22.15909 -20.66128 -20.35463 -20.12782 -18.29522 -17.99751 -17.11673 -16.86766 -16.39853 -16.23790 -15.90073 -15.52560 -15.06677 -14.70107 -14.51049 -14.38897 -14.14402 -13.89741 -13.69840 -13.63989 -13.24821 -12.94070 -12.38385 -12.27060 -12.21203 -12.08872 -11.87593 -11.78690 -11.51910 -11.04018 -10.79390 -10.73454 -10.66214 -10.54564 -10.52767 -10.03183 -9.81863 -9.57974 -9.29306 -9.20717 -8.43941 -8.31667 -6.08444 -4.11678 0.88929 1.06128 1.98937 2.14565 2.17247 2.62525 3.26989 3.34755 3.38715 3.50225 3.62972 3.77685 4.22586 4.33290 4.40974 4.55253 4.61356 4.74478 4.80306 4.93707 5.03266 5.07474 5.15582 5.20269 5.27812 5.29290 5.34057 5.45823 5.48278 5.68106 5.82012 5.89517 6.02847 6.15890 6.23628 6.31934 6.44605 6.60653 6.69896 6.71528 6.89587 7.54019 7.55718 7.64099 7.64739 7.89576 8.30107 8.94807 9.53133 11.02945 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.039080 B = 0.001902 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.311240 B =14716.286582 C =15238.027198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.350 6.350 13 C 0.471 3.529 14 O -0.503 6.503 15 C -0.097 4.097 16 H 0.134 0.866 17 C -0.140 4.140 18 C 0.521 3.479 19 O -0.503 6.503 20 N -0.559 5.559 21 C 0.167 3.833 22 C -0.157 4.157 23 C -0.092 4.092 24 C -0.147 4.147 25 C -0.093 4.093 26 C -0.158 4.158 27 C 0.107 3.893 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.098 0.902 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 -28.102 0.235 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.266 6.266 13 C 0.312 3.688 14 O -0.391 6.391 15 C -0.117 4.117 16 H 0.152 0.848 17 C -0.180 4.180 18 C 0.311 3.689 19 O -0.378 6.378 20 N -0.283 5.283 21 C 0.073 3.927 22 C -0.177 4.177 23 C -0.111 4.111 24 C -0.166 4.166 25 C -0.111 4.111 26 C -0.178 4.178 27 C -0.015 4.015 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.172 0.828 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.116 0.884 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.073 -28.211 -0.186 28.664 hybrid contribution 0.078 1.046 0.166 1.062 sum 5.151 -27.164 -0.020 27.649 Atomic orbital electron populations 1.69968 1.06094 1.26718 1.50519 1.25031 0.94886 0.99415 0.95146 0.86488 0.80088 0.83516 0.77632 1.19658 1.20948 1.20966 1.21200 0.93175 0.90630 1.51028 0.92336 1.19063 0.93832 0.90754 0.97720 1.21784 0.99984 0.90833 1.02113 1.23607 0.91144 0.83342 1.02404 1.86496 1.42724 1.14786 1.82628 1.22774 0.87894 0.85020 0.73087 1.90696 1.16558 1.86742 1.45126 1.21855 0.97131 0.90773 1.01892 0.84800 1.22361 1.04162 0.93955 0.97488 1.20976 0.79201 0.89386 0.79378 1.90649 1.38247 1.74077 1.34861 1.45815 1.34357 1.05092 1.43030 1.17793 0.97302 0.80922 0.96644 1.21653 1.01963 0.94279 0.99795 1.21076 0.97572 0.93955 0.98470 1.21152 0.98029 1.00059 0.97366 1.20952 0.98886 0.93013 0.98263 1.20833 1.00774 0.95417 1.00800 1.22205 0.95222 0.87040 0.96997 0.92908 0.96219 0.96189 0.92020 0.92031 0.91231 0.91273 0.86372 0.85609 0.82803 0.85611 0.85981 0.85567 0.85501 0.88367 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.12 5.53 -26.73 -0.15 -2.27 16 11 C 0.07 1.12 5.47 37.16 0.20 1.33 16 12 O -0.35 -4.93 10.22 -39.26 -0.40 -5.34 16 13 C 0.47 5.68 7.18 36.00 0.26 5.94 16 14 O -0.50 -7.39 15.28 -18.75 -0.29 -7.68 16 15 C -0.10 -0.78 3.65 -90.14 -0.33 -1.11 16 16 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.14 -1.15 6.41 -26.71 -0.17 -1.32 16 18 C 0.52 5.53 7.92 -10.83 -0.09 5.44 16 19 O -0.50 -6.76 14.82 5.55 0.08 -6.68 16 20 N -0.56 -5.38 3.14 -112.23 -0.35 -5.73 16 21 C 0.17 1.68 6.60 -83.69 -0.55 1.13 16 22 C -0.16 -1.65 9.29 -39.39 -0.37 -2.02 16 23 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.15 -1.09 10.04 -39.55 -0.40 -1.49 16 25 C -0.09 -0.68 10.04 -39.61 -0.40 -1.08 16 26 C -0.16 -1.31 9.42 -39.39 -0.37 -1.68 16 27 C 0.11 0.85 5.85 -3.12 -0.02 0.83 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 34 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 35 H 0.12 0.98 7.89 -51.93 -0.41 0.57 16 36 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.15 1.84 5.26 -52.49 -0.28 1.56 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.83 6.75 -52.49 -0.35 0.48 16 42 H 0.10 0.58 7.24 -51.93 -0.38 0.20 16 43 H 0.10 0.92 7.01 -51.93 -0.36 0.56 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -32.71 364.06 -9.05 -41.76 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.97 Total: -2.24 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -3.32 Total: -10.18 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.38 Total: -31.29 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.61 Total: -19.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.71 -9.05 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914996733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.304 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds