Wall clock time and date at job start Tue Mar 31 2020 11:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99704 * 2 1 4 4 H 1.48499 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47342 * 299.99826 * 3 2 1 6 6 H 1.48502 * 109.47271 * 60.00167 * 3 2 1 7 7 C 1.37874 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00382 * 180.28031 * 7 2 1 9 9 C 1.50705 * 119.99643 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47014 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.47188 * 179.97438 * 11 10 9 13 13 C 1.34232 * 117.00188 * 180.02562 * 12 11 10 14 14 O 1.20825 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99756 * 180.02562 * 13 12 11 16 16 H 1.08995 * 110.86466 * 59.29548 * 15 13 12 17 17 C 1.54629 * 110.96621 * 295.50189 * 15 13 12 18 18 C 1.51348 * 104.16515 * 217.11075 * 17 15 13 19 19 O 1.21293 * 124.92660 * 196.24741 * 18 17 15 20 20 N 1.34415 * 110.12994 * 16.20627 * 18 17 15 21 21 C 1.39924 * 124.35009 * 180.45456 * 20 18 17 22 22 C 1.38878 * 120.06869 * 353.97823 * 21 20 18 23 23 C 1.38119 * 119.92449 * 179.74340 * 22 21 20 24 24 C 1.38273 * 120.07182 * 0.52758 * 23 22 21 25 25 C 1.38284 * 120.14601 * 359.72308 * 24 23 22 26 26 C 1.38119 * 120.06578 * 0.02562 * 25 24 23 27 27 C 1.46765 * 111.30176 * 0.43843 * 20 18 17 28 28 H 0.96998 * 120.00091 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47239 * 299.99779 * 9 7 2 30 30 H 1.08998 * 109.47189 * 60.00513 * 9 7 2 31 31 H 1.08997 * 109.47347 * 300.00247 * 10 9 7 32 32 H 1.08998 * 109.46991 * 60.00120 * 10 9 7 33 33 H 1.08997 * 109.47221 * 300.00269 * 11 10 9 34 34 H 1.08998 * 109.47189 * 60.00186 * 11 10 9 35 35 H 1.08997 * 110.48760 * 335.76325 * 17 15 13 36 36 H 1.08996 * 110.48375 * 98.41323 * 17 15 13 37 37 H 1.07993 * 120.03763 * 359.97373 * 22 21 20 38 38 H 1.08001 * 119.96170 * 180.25493 * 23 22 21 39 39 H 1.08006 * 119.93194 * 179.75013 * 24 23 22 40 40 H 1.07994 * 119.96712 * 179.97438 * 25 24 23 41 41 H 1.07996 * 120.03275 * 179.97438 * 26 25 24 42 42 H 1.09003 * 110.24242 * 223.98714 * 27 20 18 43 43 H 1.09000 * 110.32328 * 102.02296 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 8 2.4239 -6.0907 -0.0018 13 6 1.9109 -7.3311 -0.0029 14 8 0.7131 -7.4894 -0.0029 15 6 2.8290 -8.5261 -0.0030 16 1 3.4773 -8.5177 0.8731 17 6 3.6600 -8.5853 -1.3057 18 6 3.7481 -10.0628 -1.6220 19 8 4.5373 -10.5613 -2.3965 20 7 2.8253 -10.7421 -0.9194 21 6 2.6515 -12.1292 -0.9783 22 6 3.3753 -12.8829 -1.8932 23 6 3.2054 -14.2526 -1.9451 24 6 2.3079 -14.8722 -1.0951 25 6 1.5819 -14.1240 -0.1866 26 6 1.7510 -12.7546 -0.1260 27 6 2.0235 -9.8420 -0.0822 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6241 -2.5567 -0.8903 31 1 2.8720 -3.6043 -0.8905 32 1 2.8719 -3.6043 0.8894 33 1 0.8534 -5.0450 0.8885 34 1 0.8541 -5.0445 -0.8914 35 1 3.1494 -8.0533 -2.1084 36 1 4.6543 -8.1695 -1.1431 37 1 4.0728 -12.3990 -2.5606 38 1 3.7709 -14.8398 -2.6535 39 1 2.1739 -15.9430 -1.1405 40 1 0.8814 -14.6109 0.4757 41 1 1.1834 -12.1707 0.5834 42 1 1.8962 -10.2666 0.9136 43 1 1.0518 -9.6624 -0.5422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914996733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:28 Heat of formation + Delta-G solvation = -116.321120 kcal Electronic energy + Delta-G solvation = -24994.751415 eV Core-core repulsion = 21196.954539 eV Total energy + Delta-G solvation = -3797.796877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.54378 -41.34184 -39.54785 -38.24419 -37.45418 -35.93306 -34.49000 -33.61028 -31.90070 -30.41552 -29.10256 -28.91365 -26.07102 -24.70059 -24.10186 -22.94811 -22.14608 -21.41281 -20.90624 -19.14869 -18.79979 -18.58545 -17.93327 -17.57118 -17.43373 -16.61650 -16.48990 -16.39575 -15.83050 -15.77200 -15.18311 -14.92394 -14.73190 -14.63039 -14.44415 -14.31028 -14.04273 -13.76272 -13.71491 -13.59978 -12.94732 -12.84831 -12.68390 -12.54732 -12.49767 -12.30001 -12.11648 -12.07404 -11.81948 -11.43372 -11.39553 -11.32472 -11.20870 -10.82468 -10.57006 -9.92770 -9.00115 -8.21343 -6.32257 0.21898 0.42347 1.01594 1.32399 1.38930 1.41999 1.42942 1.55798 1.74734 2.41727 2.84876 2.91651 3.07686 3.13020 3.50294 3.58121 3.94328 3.95697 4.03969 4.05075 4.07753 4.23754 4.35082 4.38693 4.45127 4.50285 4.51902 4.57890 4.67417 4.71150 4.83311 4.89698 5.09301 5.10681 5.17606 5.39324 5.41826 5.52856 5.53683 5.61325 5.66531 5.82139 5.91005 6.07746 6.20431 6.58677 6.79239 6.84466 7.37444 8.90832 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.039080 B = 0.001902 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.311240 B =14716.286582 C =15238.027198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.095 4.095 11 C 0.078 3.922 12 O -0.349 6.349 13 C 0.474 3.526 14 O -0.529 6.529 15 C -0.081 4.081 16 H 0.168 0.832 17 C -0.134 4.134 18 C 0.515 3.485 19 O -0.540 6.540 20 N -0.558 5.558 21 C 0.144 3.856 22 C -0.182 4.182 23 C -0.100 4.100 24 C -0.147 4.147 25 C -0.093 4.093 26 C -0.161 4.161 27 C 0.108 3.892 28 H 0.264 0.736 29 H -0.002 1.002 30 H -0.003 1.003 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.145 0.855 42 H 0.125 0.875 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -29.154 1.393 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.133 4.133 11 C 0.005 3.995 12 O -0.264 6.264 13 C 0.317 3.683 14 O -0.418 6.418 15 C -0.101 4.101 16 H 0.186 0.814 17 C -0.174 4.174 18 C 0.305 3.695 19 O -0.418 6.418 20 N -0.281 5.281 21 C 0.051 3.949 22 C -0.202 4.202 23 C -0.119 4.119 24 C -0.165 4.165 25 C -0.111 4.111 26 C -0.181 4.181 27 C -0.013 4.013 28 H 0.073 0.927 29 H 0.016 0.984 30 H 0.015 0.985 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.172 0.828 41 H 0.163 0.837 42 H 0.143 0.857 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.891 -29.285 0.986 29.888 hybrid contribution -0.234 1.239 -0.204 1.277 sum 5.656 -28.046 0.782 28.622 Atomic orbital electron populations 1.70096 1.07815 1.27798 1.51621 1.25982 0.95769 1.03442 0.94723 0.85371 0.79168 0.78672 0.77672 1.18379 1.20562 1.20480 1.21674 0.93782 0.91929 1.50552 0.91654 1.18952 0.94342 0.92513 0.95516 1.21458 0.98710 0.90426 1.02696 1.23169 0.90838 0.83379 1.02138 1.86474 1.41837 1.15119 1.83019 1.23465 0.88144 0.84928 0.71723 1.90698 1.18025 1.86859 1.46257 1.21904 0.96483 0.88575 1.03098 0.81428 1.22376 1.05215 0.92322 0.97474 1.21365 0.78907 0.90294 0.78936 1.90635 1.39826 1.74874 1.36478 1.45894 1.34055 1.05264 1.42852 1.18032 0.98268 0.81174 0.97466 1.21634 1.02677 0.95422 1.00488 1.21311 0.98093 0.93336 0.99124 1.21500 0.97054 1.01434 0.96534 1.21358 0.98820 0.92736 0.98229 1.21109 1.00226 0.96164 1.00579 1.22298 0.94314 0.86794 0.97922 0.92742 0.98374 0.98490 0.91453 0.91290 0.91444 0.91765 0.86568 0.83787 0.84989 0.84270 0.83445 0.82826 0.83727 0.85718 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.55 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.10 -3.65 5.53 30.59 0.17 -3.48 16 11 C 0.08 2.55 5.47 71.98 0.39 2.95 16 12 O -0.35 -9.23 10.22 -51.44 -0.53 -9.76 16 13 C 0.47 10.65 7.18 71.23 0.51 11.16 16 14 O -0.53 -15.02 15.28 21.97 0.34 -14.68 16 15 C -0.08 -1.12 3.65 -10.48 -0.04 -1.15 16 16 H 0.17 1.26 8.14 -2.39 -0.02 1.24 16 17 C -0.13 -2.02 6.41 30.61 0.20 -1.82 16 18 C 0.51 10.84 7.92 87.92 0.70 11.53 16 19 O -0.54 -15.10 14.82 -3.07 -0.05 -15.14 16 20 N -0.56 -10.31 3.14 -627.59 -1.97 -12.28 16 21 C 0.14 2.83 6.60 38.15 0.25 3.08 16 22 C -0.18 -3.93 9.29 22.39 0.21 -3.72 16 23 C -0.10 -1.65 10.04 22.25 0.22 -1.42 16 24 C -0.15 -1.87 10.04 22.29 0.22 -1.64 16 25 C -0.09 -1.13 10.04 22.25 0.22 -0.91 16 26 C -0.16 -2.37 9.42 22.39 0.21 -2.16 16 27 C 0.11 1.50 5.85 86.83 0.51 2.01 16 28 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 30 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 34 H 0.06 2.15 8.13 -2.39 -0.02 2.14 16 35 H 0.12 1.83 7.89 -2.39 -0.02 1.81 16 36 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.13 3.41 5.26 -2.91 -0.02 3.40 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.15 1.51 6.75 -2.91 -0.02 1.49 16 42 H 0.12 1.08 7.24 -2.39 -0.02 1.07 16 43 H 0.09 1.54 7.01 -2.39 -0.02 1.52 16 Total: -1.00 -72.26 364.06 5.74 -66.51 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.01 Total: 8.93 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 4.62 Total: -13.39 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -1.68 Total: -67.73 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.24 Total: -39.59 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -72.26 5.74 -66.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914996733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.807 kcal (2) G-P(sol) polarization free energy of solvation -72.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds