Wall clock time and date at job start Tue Mar 31 2020 11:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86801 * 120.00290 * 2 1 4 4 H 1.48496 * 109.47111 * 240.00186 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47373 * 119.99770 * 3 2 1 7 7 C 1.40127 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99784 * 180.02562 * 7 2 1 9 9 C 1.46192 * 119.99726 * 0.02562 * 7 2 1 10 10 O 1.21724 * 120.00331 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99906 * 179.97438 * 9 7 2 12 12 C 1.39064 * 120.00175 * 185.28086 * 11 9 7 13 13 C 1.39279 * 119.93623 * 33.64325 * 12 11 9 14 14 C 1.37600 * 120.06948 * 180.02562 * 13 12 11 15 15 C 1.39829 * 119.93581 * 359.97438 * 14 13 12 16 16 C 1.47464 * 120.07328 * 179.97438 * 15 14 13 17 17 O 1.21511 * 119.99418 * 0.02562 * 16 15 14 18 18 O 1.34747 * 120.00536 * 180.27982 * 16 15 14 19 19 C 1.45195 * 117.00350 * 179.72985 * 18 16 15 20 20 C 1.52991 * 109.47418 * 179.97438 * 19 18 16 21 21 C 1.54267 * 110.03536 * 292.90532 * 20 19 18 22 22 C 1.54964 * 104.16308 * 217.13574 * 21 20 19 23 23 C 1.54888 * 102.77537 * 37.88599 * 22 21 20 24 24 C 1.53873 * 110.03511 * 175.68622 * 20 19 18 25 25 C 1.39837 * 119.86238 * 0.25807 * 15 14 13 26 26 C 1.37607 * 119.93292 * 359.51058 * 25 15 14 27 27 H 0.97002 * 119.99683 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99578 * 5.27557 * 11 9 7 29 29 H 1.08000 * 119.96202 * 359.97438 * 13 12 11 30 30 H 1.08002 * 120.02971 * 179.97438 * 14 13 12 31 31 H 1.09004 * 109.47088 * 299.99834 * 19 18 16 32 32 H 1.09007 * 109.47380 * 59.99730 * 19 18 16 33 33 H 1.09002 * 110.01950 * 54.30132 * 20 19 18 34 34 H 1.09000 * 110.48428 * 335.78800 * 21 20 19 35 35 H 1.09003 * 110.48281 * 98.42426 * 21 20 19 36 36 H 1.09000 * 110.71630 * 279.57171 * 22 21 20 37 37 H 1.08993 * 110.92147 * 156.29623 * 22 21 20 38 38 H 1.09007 * 110.48575 * 203.40304 * 23 22 21 39 39 H 1.08997 * 110.60096 * 80.82121 * 23 22 21 40 40 H 1.09005 * 110.03679 * 238.56740 * 24 20 19 41 41 H 1.08997 * 110.03344 * 359.95482 * 24 20 19 42 42 H 1.08008 * 120.03104 * 179.72042 * 25 15 14 43 43 H 1.07997 * 119.96606 * 180.21364 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6963 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0069 -1.2136 0.0005 8 1 3.0869 -1.2136 0.0010 9 6 1.2759 -2.4796 0.0005 10 8 0.0586 -2.4795 0.0005 11 7 1.9497 -3.6469 0.0005 12 6 1.2588 -4.8486 -0.1103 13 6 0.0984 -4.9150 -0.8778 14 6 -0.5877 -6.1026 -0.9889 15 6 -0.1186 -7.2437 -0.3308 16 6 -0.8518 -8.5178 -0.4474 17 8 -1.8645 -8.5769 -1.1163 18 8 -0.4017 -9.6152 0.1920 19 6 -1.1772 -10.8329 0.0371 20 6 -0.5159 -11.9628 0.8287 21 6 0.8444 -12.3247 0.1973 22 6 0.9356 -13.8641 0.3497 23 6 -0.5217 -14.3208 0.0915 24 6 -1.3840 -13.2315 0.7620 25 6 1.0440 -7.1727 0.4430 26 6 1.7284 -5.9834 0.5464 27 1 -0.4850 0.8401 -0.0004 28 1 2.9167 -3.6486 0.0778 29 1 -0.2636 -4.0332 -1.3855 30 1 -1.4876 -6.1532 -1.5839 31 1 -2.1880 -10.6700 0.4112 32 1 -1.2195 -11.1051 -1.0176 33 1 -0.3770 -11.6598 1.8665 34 1 0.8628 -12.0440 -0.8558 35 1 1.6569 -11.8383 0.7370 36 1 1.2522 -14.1337 1.3573 37 1 1.6110 -14.2894 -0.3925 38 1 -0.7051 -15.2909 0.5538 39 1 -0.7261 -14.3645 -0.9783 40 1 -1.6657 -13.5446 1.7674 41 1 -2.2769 -13.0420 0.1663 42 1 1.4062 -8.0514 0.9561 43 1 2.6283 -5.9289 1.1411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918867128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:25 Heat of formation + Delta-G solvation = -120.524914 kcal Electronic energy + Delta-G solvation = -25066.459146 eV Core-core repulsion = 21268.479979 eV Total energy + Delta-G solvation = -3797.979167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39777 -39.22966 -38.43947 -36.96491 -36.04705 -33.65660 -32.58677 -31.03386 -30.49552 -29.45582 -29.00021 -26.60741 -25.19480 -23.29327 -22.37743 -21.10990 -20.77667 -20.04802 -19.82197 -17.90108 -17.42750 -17.08099 -16.41808 -16.26658 -15.74208 -15.58365 -15.25257 -14.50073 -14.23237 -14.08480 -13.80628 -13.67571 -13.27193 -13.19145 -12.81033 -12.70427 -12.46164 -12.04692 -11.88959 -11.67573 -11.46840 -11.38162 -11.36692 -11.28288 -11.14243 -10.94935 -10.85887 -10.79107 -10.68273 -10.44943 -10.44521 -10.25720 -9.50146 -9.00028 -8.62660 -7.90642 -7.31328 -6.44950 -4.93433 1.15334 1.86228 2.75471 2.87517 3.04058 3.08998 3.10868 3.90443 4.13049 4.24407 4.26073 4.37788 4.41609 4.46244 4.85176 4.95954 5.03079 5.11783 5.15651 5.23233 5.30563 5.34013 5.34341 5.46465 5.47402 5.52469 5.57026 5.65896 5.75920 5.77293 5.90940 5.95081 5.98204 6.07301 6.08998 6.40953 6.44928 6.62074 6.85152 6.89597 7.15896 7.20953 7.57848 7.86934 7.99102 8.01662 8.74189 9.03753 10.24208 10.45004 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041826 B = 0.002066 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.282198 B =13551.060972 C =14016.931535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.538 3.462 10 O -0.555 6.555 11 N -0.694 5.694 12 C 0.236 3.764 13 C -0.147 4.147 14 C -0.029 4.029 15 C -0.187 4.187 16 C 0.517 3.483 17 O -0.522 6.522 18 O -0.354 6.354 19 C 0.075 3.925 20 C -0.093 4.093 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.035 4.035 26 C -0.196 4.196 27 H 0.274 0.726 28 H 0.397 0.603 29 H 0.147 0.853 30 H 0.130 0.870 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.130 0.870 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -22.235 1.245 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.336 5.336 12 C 0.134 3.866 13 C -0.168 4.168 14 C -0.048 4.048 15 C -0.190 4.190 16 C 0.364 3.636 17 O -0.412 6.412 18 O -0.272 6.272 19 C 0.001 3.999 20 C -0.111 4.111 21 C -0.155 4.155 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.054 4.054 26 C -0.217 4.217 27 H 0.085 0.915 28 H 0.231 0.769 29 H 0.165 0.835 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.148 0.852 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.840 -22.016 1.054 22.118 hybrid contribution 0.749 0.773 0.085 1.080 sum 2.589 -21.243 1.138 21.431 Atomic orbital electron populations 1.69962 1.07201 1.28182 1.33001 1.25765 0.94753 1.00640 0.92507 0.86297 0.79785 0.80336 0.79660 1.19042 1.20317 1.19072 1.20835 0.93875 0.88859 1.53558 0.90836 1.18463 0.87559 0.82018 0.77441 1.90660 1.13587 1.85848 1.53516 1.44310 1.10065 1.04537 1.74648 1.18292 0.92215 0.86464 0.89608 1.21297 0.96758 0.98196 1.00557 1.21047 0.98011 0.90446 0.95322 1.18790 0.99947 0.90868 1.09412 1.21266 0.82690 0.83902 0.75763 1.90798 1.25252 1.85573 1.39610 1.86541 1.53978 1.18881 1.67765 1.23176 0.94451 0.81602 1.00720 1.21834 0.95735 0.93166 1.00404 1.22428 0.96499 0.95380 1.01158 1.22535 0.96542 0.95746 1.01627 1.22367 0.95110 0.98102 1.00708 1.22130 0.98291 0.93800 1.01393 1.21020 0.92457 0.97298 0.94644 1.20856 1.03689 0.92974 1.04228 0.91467 0.76912 0.83499 0.85179 0.91415 0.91310 0.89762 0.91382 0.91056 0.91463 0.91539 0.91619 0.91558 0.91156 0.91395 0.85219 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.33 11.82 55.55 0.66 -20.67 16 2 C 0.09 2.22 5.50 -17.35 -0.10 2.13 16 3 Si 0.92 18.88 29.56 -169.99 -5.02 13.85 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.54 -14.02 9.54 -35.68 -0.34 -14.36 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 9 C 0.54 14.26 7.46 -13.06 -0.10 14.16 16 10 O -0.55 -16.70 12.69 5.17 0.07 -16.63 16 11 N -0.69 -14.65 5.30 -11.19 -0.06 -14.71 16 12 C 0.24 4.67 6.27 -83.81 -0.53 4.15 16 13 C -0.15 -3.05 8.62 -39.43 -0.34 -3.39 16 14 C -0.03 -0.54 9.58 -39.22 -0.38 -0.91 16 15 C -0.19 -3.17 5.88 -104.95 -0.62 -3.79 16 16 C 0.52 8.47 7.89 34.49 0.27 8.74 16 17 O -0.52 -9.66 16.13 -19.27 -0.31 -9.97 16 18 O -0.35 -4.84 9.30 -40.62 -0.38 -5.22 16 19 C 0.07 0.82 4.51 37.15 0.17 0.99 16 20 C -0.09 -0.79 3.19 -89.51 -0.29 -1.07 16 21 C -0.12 -0.95 6.22 -25.03 -0.16 -1.10 16 22 C -0.13 -0.84 6.91 -24.70 -0.17 -1.01 16 23 C -0.13 -0.79 6.83 -25.07 -0.17 -0.96 16 24 C -0.12 -0.82 6.46 -25.61 -0.17 -0.98 16 25 C -0.04 -0.53 9.60 -39.21 -0.38 -0.91 16 26 C -0.20 -3.16 9.94 -39.43 -0.39 -3.55 16 27 H 0.27 7.03 8.29 -40.82 -0.34 6.70 16 28 H 0.40 6.99 8.79 -40.82 -0.36 6.63 16 29 H 0.15 3.45 6.41 -52.49 -0.34 3.11 16 30 H 0.13 2.31 7.64 -52.49 -0.40 1.91 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.76 8.02 -51.93 -0.42 0.34 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.60 7.77 -51.93 -0.40 0.19 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.46 7.67 -51.93 -0.40 0.07 16 42 H 0.13 1.62 7.60 -52.48 -0.40 1.22 16 43 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -32.14 363.77 -9.30 -41.44 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.06 Total: 8.31 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -3.67 Total: -1.87 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.60 Total: -35.39 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.62 Total: -31.82 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.14 -9.30 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918867128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.086 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds