Wall clock time and date at job start Tue Mar 31 2020 11:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86801 * 120.00290 * 2 1 4 4 H 1.48496 * 109.47111 * 240.00186 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47373 * 119.99770 * 3 2 1 7 7 C 1.40127 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99784 * 180.02562 * 7 2 1 9 9 C 1.46192 * 119.99726 * 0.02562 * 7 2 1 10 10 O 1.21724 * 120.00331 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99906 * 179.97438 * 9 7 2 12 12 C 1.39064 * 120.00175 * 185.28086 * 11 9 7 13 13 C 1.39279 * 119.93623 * 33.64325 * 12 11 9 14 14 C 1.37600 * 120.06948 * 180.02562 * 13 12 11 15 15 C 1.39829 * 119.93581 * 359.97438 * 14 13 12 16 16 C 1.47464 * 120.07328 * 179.97438 * 15 14 13 17 17 O 1.21511 * 119.99418 * 0.02562 * 16 15 14 18 18 O 1.34747 * 120.00536 * 180.27982 * 16 15 14 19 19 C 1.45195 * 117.00350 * 179.72985 * 18 16 15 20 20 C 1.52991 * 109.47418 * 179.97438 * 19 18 16 21 21 C 1.54267 * 110.03536 * 292.90532 * 20 19 18 22 22 C 1.54964 * 104.16308 * 217.13574 * 21 20 19 23 23 C 1.54888 * 102.77537 * 37.88599 * 22 21 20 24 24 C 1.53873 * 110.03511 * 175.68622 * 20 19 18 25 25 C 1.39837 * 119.86238 * 0.25807 * 15 14 13 26 26 C 1.37607 * 119.93292 * 359.51058 * 25 15 14 27 27 H 0.97002 * 119.99683 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99578 * 5.27557 * 11 9 7 29 29 H 1.08000 * 119.96202 * 359.97438 * 13 12 11 30 30 H 1.08002 * 120.02971 * 179.97438 * 14 13 12 31 31 H 1.09004 * 109.47088 * 299.99834 * 19 18 16 32 32 H 1.09007 * 109.47380 * 59.99730 * 19 18 16 33 33 H 1.09002 * 110.01950 * 54.30132 * 20 19 18 34 34 H 1.09000 * 110.48428 * 335.78800 * 21 20 19 35 35 H 1.09003 * 110.48281 * 98.42426 * 21 20 19 36 36 H 1.09000 * 110.71630 * 279.57171 * 22 21 20 37 37 H 1.08993 * 110.92147 * 156.29623 * 22 21 20 38 38 H 1.09007 * 110.48575 * 203.40304 * 23 22 21 39 39 H 1.08997 * 110.60096 * 80.82121 * 23 22 21 40 40 H 1.09005 * 110.03679 * 238.56740 * 24 20 19 41 41 H 1.08997 * 110.03344 * 359.95482 * 24 20 19 42 42 H 1.08008 * 120.03104 * 179.72042 * 25 15 14 43 43 H 1.07997 * 119.96606 * 180.21364 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6963 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0069 -1.2136 0.0005 8 1 3.0869 -1.2136 0.0010 9 6 1.2759 -2.4796 0.0005 10 8 0.0586 -2.4795 0.0005 11 7 1.9497 -3.6469 0.0005 12 6 1.2588 -4.8486 -0.1103 13 6 0.0984 -4.9150 -0.8778 14 6 -0.5877 -6.1026 -0.9889 15 6 -0.1186 -7.2437 -0.3308 16 6 -0.8518 -8.5178 -0.4474 17 8 -1.8645 -8.5769 -1.1163 18 8 -0.4017 -9.6152 0.1920 19 6 -1.1772 -10.8329 0.0371 20 6 -0.5159 -11.9628 0.8287 21 6 0.8444 -12.3247 0.1973 22 6 0.9356 -13.8641 0.3497 23 6 -0.5217 -14.3208 0.0915 24 6 -1.3840 -13.2315 0.7620 25 6 1.0440 -7.1727 0.4430 26 6 1.7284 -5.9834 0.5464 27 1 -0.4850 0.8401 -0.0004 28 1 2.9167 -3.6486 0.0778 29 1 -0.2636 -4.0332 -1.3855 30 1 -1.4876 -6.1532 -1.5839 31 1 -2.1880 -10.6700 0.4112 32 1 -1.2195 -11.1051 -1.0176 33 1 -0.3770 -11.6598 1.8665 34 1 0.8628 -12.0440 -0.8558 35 1 1.6569 -11.8383 0.7370 36 1 1.2522 -14.1337 1.3573 37 1 1.6110 -14.2894 -0.3925 38 1 -0.7051 -15.2909 0.5538 39 1 -0.7261 -14.3645 -0.9783 40 1 -1.6657 -13.5446 1.7674 41 1 -2.2769 -13.0420 0.1663 42 1 1.4062 -8.0514 0.9561 43 1 2.6283 -5.9289 1.1411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918867128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:24 Heat of formation + Delta-G solvation = -138.615659 kcal Electronic energy + Delta-G solvation = -25067.243619 eV Core-core repulsion = 21268.479979 eV Total energy + Delta-G solvation = -3798.763641 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67809 -40.75173 -39.28279 -38.59607 -37.25426 -35.43008 -34.58204 -32.12558 -31.73561 -30.86728 -29.56223 -28.47866 -26.18201 -24.68916 -23.80744 -22.39386 -21.63377 -21.41414 -20.65637 -19.58568 -18.88382 -18.30690 -17.82228 -17.54849 -17.45921 -16.52520 -16.12837 -16.00941 -15.70697 -15.43948 -14.95668 -14.77501 -14.67241 -14.32852 -14.24487 -14.14630 -13.66878 -13.52481 -13.31704 -13.13241 -12.77226 -12.73664 -12.37349 -12.21595 -12.12910 -12.08509 -11.98184 -11.87843 -11.64311 -11.49364 -11.47688 -11.26499 -11.16757 -10.90879 -10.13495 -9.85999 -8.95704 -8.39810 -6.98135 -0.28011 0.44512 1.39568 1.40774 1.51355 1.55802 1.59499 2.19577 2.34919 2.77507 2.88070 3.52957 3.55960 3.63463 3.67924 3.85482 3.94263 4.01259 4.19370 4.30313 4.36155 4.36883 4.47316 4.57362 4.64883 4.67910 4.69957 4.82272 4.87721 5.01943 5.03056 5.10878 5.13691 5.23387 5.25056 5.30985 5.34939 5.37847 5.41771 5.44935 5.52057 5.67043 5.76570 6.11955 6.23713 6.70712 6.75021 7.25260 8.28763 8.53078 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041826 B = 0.002066 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.282198 B =13551.060972 C =14016.931535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.029 3.971 3 Si 1.002 2.998 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.561 4.561 8 H 0.098 0.902 9 C 0.526 3.474 10 O -0.604 6.604 11 N -0.686 5.686 12 C 0.209 3.791 13 C -0.169 4.169 14 C -0.035 4.035 15 C -0.186 4.186 16 C 0.522 3.478 17 O -0.547 6.547 18 O -0.345 6.345 19 C 0.069 3.931 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.018 4.018 26 C -0.175 4.175 27 H 0.278 0.722 28 H 0.414 0.586 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.170 0.830 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -24.097 2.598 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.596 4.596 8 H 0.116 0.884 9 C 0.333 3.667 10 O -0.489 6.489 11 N -0.329 5.329 12 C 0.109 3.891 13 C -0.191 4.191 14 C -0.054 4.054 15 C -0.188 4.188 16 C 0.370 3.630 17 O -0.440 6.440 18 O -0.261 6.261 19 C -0.004 4.004 20 C -0.107 4.107 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.155 4.155 25 C -0.037 4.037 26 C -0.196 4.196 27 H 0.088 0.912 28 H 0.251 0.749 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.188 0.812 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.294 -23.952 2.412 24.453 hybrid contribution -0.043 1.119 -0.344 1.171 sum 4.251 -22.833 2.068 23.317 Atomic orbital electron populations 1.70136 1.09626 1.29566 1.34709 1.27033 0.95550 1.05126 0.91114 0.85000 0.78160 0.74324 0.80469 1.17715 1.20102 1.17544 1.21409 0.95215 0.89319 1.53693 0.88420 1.18798 0.87208 0.83794 0.76882 1.90625 1.15682 1.87036 1.55557 1.43784 1.10741 1.03832 1.74592 1.18524 0.92404 0.87181 0.91024 1.21027 0.98319 0.97646 1.02069 1.20980 0.97959 0.90567 0.95918 1.18949 1.00500 0.90568 1.08812 1.21122 0.82083 0.84386 0.75445 1.90793 1.26373 1.86054 1.40773 1.86522 1.53978 1.18915 1.66731 1.23480 0.94591 0.81050 1.01297 1.21870 0.96112 0.92660 1.00028 1.22446 0.96176 0.96653 1.00477 1.22529 0.96845 0.94492 1.02271 1.22384 0.94760 0.98442 1.00674 1.22153 0.98052 0.93136 1.02187 1.21417 0.90913 0.98194 0.93168 1.21177 1.04314 0.91422 1.02711 0.91162 0.74916 0.87567 0.85521 0.91571 0.91491 0.89381 0.92348 0.90978 0.90712 0.91029 0.90401 0.91777 0.90018 0.91547 0.81232 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.67 11.82 21.85 0.26 -47.41 16 2 C 0.03 1.51 5.50 85.33 0.47 1.98 16 3 Si 1.00 38.60 29.56 68.60 2.03 40.63 16 4 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 7 C -0.56 -29.75 9.54 24.80 0.24 -29.51 16 8 H 0.10 4.51 7.85 -2.91 -0.02 4.48 16 9 C 0.53 28.89 7.46 86.31 0.64 29.54 16 10 O -0.60 -38.54 12.69 -4.42 -0.06 -38.60 16 11 N -0.69 -29.29 5.30 -307.50 -1.63 -30.92 16 12 C 0.21 8.31 6.27 38.49 0.24 8.55 16 13 C -0.17 -7.42 8.62 22.37 0.19 -7.23 16 14 C -0.04 -1.35 9.58 22.50 0.22 -1.13 16 15 C -0.19 -6.09 5.88 -20.07 -0.12 -6.21 16 16 C 0.52 16.52 7.89 70.25 0.55 17.07 16 17 O -0.55 -20.21 16.13 19.80 0.32 -19.89 16 18 O -0.35 -8.69 9.30 -56.58 -0.53 -9.22 16 19 C 0.07 1.42 4.51 71.98 0.32 1.75 16 20 C -0.09 -1.30 3.19 -10.07 -0.03 -1.33 16 21 C -0.12 -1.67 6.22 31.70 0.20 -1.47 16 22 C -0.12 -1.32 6.91 31.91 0.22 -1.10 16 23 C -0.13 -1.28 6.83 31.67 0.22 -1.06 16 24 C -0.12 -1.36 6.46 31.32 0.20 -1.16 16 25 C -0.02 -0.50 9.60 22.51 0.22 -0.28 16 26 C -0.18 -5.19 9.94 22.37 0.22 -4.97 16 27 H 0.28 14.86 8.29 -92.71 -0.77 14.09 16 28 H 0.41 14.24 8.79 -92.71 -0.81 13.43 16 29 H 0.11 5.50 6.41 -2.91 -0.02 5.48 16 30 H 0.13 4.80 7.64 -2.91 -0.02 4.78 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.41 8.02 -2.38 -0.02 1.39 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.06 0.92 7.77 -2.39 -0.02 0.91 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.07 0.79 7.67 -2.39 -0.02 0.77 16 42 H 0.17 3.35 7.60 -2.91 -0.02 3.32 16 43 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -73.88 363.77 4.61 -69.26 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.22 Total: 32.72 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 4.00 Total: 3.43 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.37 Total: -78.33 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -0.26 Total: -67.70 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -73.88 4.61 -69.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918867128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.352 kcal (2) G-P(sol) polarization free energy of solvation -73.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds