Wall clock time and date at job start Tue Mar 31 2020 10:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 120.00122 * 2 1 4 4 H 1.48503 * 109.47154 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47303 * 120.00031 * 3 2 1 6 6 H 1.48498 * 109.47017 * 240.00162 * 3 2 1 7 7 C 1.39934 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99795 * 175.51309 * 7 2 1 9 9 C 1.41440 * 120.00412 * 355.50329 * 7 2 1 10 10 C 1.40781 * 120.18286 * 214.50662 * 9 7 2 11 11 C 1.37704 * 120.04312 * 179.74265 * 10 9 7 12 12 C 1.38377 * 120.41155 * 0.51012 * 11 10 9 13 13 C 1.39880 * 120.35335 * 359.76678 * 12 11 10 14 14 C 1.47888 * 120.01974 * 179.97438 * 13 12 11 15 15 O 1.21557 * 119.99808 * 188.25269 * 14 13 12 16 16 N 1.34776 * 120.00430 * 8.24939 * 14 13 12 17 17 C 1.47027 * 125.64436 * 354.82079 * 16 14 13 18 18 C 1.54325 * 107.26442 * 178.90372 * 17 16 14 19 19 C 1.55150 * 102.94507 * 337.80540 * 18 17 16 20 20 H 1.08990 * 111.00753 * 277.42559 * 19 18 17 21 21 C 1.53006 * 111.00139 * 153.57513 * 19 18 17 22 22 O 1.43747 * 109.63731 * 298.90904 * 21 19 18 23 23 C 1.44580 * 104.92096 * 215.70940 * 22 21 19 24 24 C 1.54915 * 101.63645 * 36.26993 * 23 22 21 25 25 O 1.43367 * 109.62914 * 179.69225 * 21 19 18 26 26 C 1.47424 * 125.64808 * 174.51354 * 16 14 13 27 27 C 1.39029 * 119.95434 * 359.97438 * 13 12 11 28 28 H 0.97002 * 119.99621 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.97682 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.79816 * 180.23404 * 11 10 9 31 31 H 1.07998 * 119.82009 * 179.74209 * 12 11 10 32 32 H 1.08996 * 109.87950 * 298.31765 * 17 16 14 33 33 H 1.08989 * 109.88186 * 59.33097 * 17 16 14 34 34 H 1.09009 * 110.72049 * 96.17529 * 18 17 16 35 35 H 1.09003 * 110.71690 * 219.26294 * 18 17 16 36 36 H 1.09004 * 109.62230 * 59.30394 * 21 19 18 37 37 H 1.08994 * 111.08879 * 278.15825 * 23 22 21 38 38 H 1.09005 * 110.98025 * 154.32626 * 23 22 21 39 39 H 1.09006 * 110.69079 * 205.96218 * 24 23 22 40 40 H 1.08994 * 110.84964 * 82.82017 * 24 23 22 41 41 H 1.08996 * 110.36765 * 323.00323 * 26 16 14 42 42 H 1.08994 * 110.36567 * 85.33077 * 26 16 14 43 43 H 1.07994 * 120.20543 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7464 -0.0006 5 1 3.0961 1.6964 1.2125 6 1 3.0960 1.6963 -1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0855 -1.2133 -0.0737 9 6 1.3040 -2.4350 0.0949 10 6 1.8657 -3.5225 0.7905 11 6 1.1755 -4.7102 0.8862 12 6 -0.0669 -4.8482 0.2928 13 6 -0.6384 -3.7805 -0.4073 14 6 -1.9664 -3.9363 -1.0392 15 8 -2.3970 -3.0664 -1.7710 16 7 -2.6992 -5.0426 -0.8037 17 6 -2.2588 -6.2138 -0.0316 18 6 -3.4341 -7.2136 -0.0056 19 6 -4.6648 -6.3106 -0.2834 20 1 -5.0059 -5.8232 0.6298 21 6 -5.7968 -7.1106 -0.9312 22 8 -5.3524 -7.6445 -2.1897 23 6 -6.5137 -7.5880 -3.0490 24 6 -7.1812 -6.2690 -2.5860 25 8 -6.9196 -6.2512 -1.1681 26 6 -4.0773 -5.2762 -1.2723 27 6 0.0429 -2.5729 -0.5087 28 1 -0.4850 0.8401 -0.0004 29 1 2.8369 -3.4239 1.2525 30 1 1.6085 -5.5407 1.4239 31 1 -0.5980 -5.7854 0.3703 32 1 -1.3939 -6.6707 -0.5123 33 1 -2.0024 -5.9130 0.9841 34 1 -3.3205 -7.9628 -0.7893 35 1 -3.5141 -7.6893 0.9719 36 1 -6.0927 -7.9263 -0.2714 37 1 -7.1714 -8.4398 -2.8760 38 1 -6.2210 -7.5301 -4.0974 39 1 -8.2537 -6.2914 -2.7796 40 1 -6.7210 -5.4095 -3.0733 41 1 -4.6514 -4.3503 -1.2389 42 1 -4.0703 -5.6830 -2.2834 43 1 -0.3943 -1.7461 -1.0486 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928009077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:00 Heat of formation + Delta-G solvation = -76.206457 kcal Electronic energy + Delta-G solvation = -26551.180823 eV Core-core repulsion = 22755.123448 eV Total energy + Delta-G solvation = -3796.057375 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89605 -39.54365 -37.34415 -36.59446 -35.27494 -33.69078 -32.41626 -30.28739 -29.94302 -29.35228 -28.60654 -25.56925 -25.05072 -23.68328 -23.15862 -21.59888 -20.78576 -20.33461 -19.09380 -17.67688 -17.36548 -16.96955 -16.71758 -15.78660 -15.43839 -15.29109 -14.83446 -14.65400 -14.59349 -13.96159 -13.77016 -13.44651 -13.32469 -13.04829 -13.00018 -12.84400 -12.59285 -12.30085 -12.20735 -11.87583 -11.70779 -11.59131 -11.10507 -11.09393 -10.95573 -10.76942 -10.52550 -10.47959 -10.23240 -9.95223 -9.83856 -9.50116 -9.22797 -8.92534 -8.21853 -7.58135 -7.33522 -6.59070 -4.40289 2.24223 2.88174 3.11766 3.11855 3.13864 3.18883 3.40888 3.70857 3.87505 4.00341 4.24916 4.36911 4.50681 4.62371 4.69403 4.74785 4.87468 5.09908 5.11481 5.22723 5.34469 5.37945 5.48690 5.55650 5.59957 5.62108 5.74848 5.83551 6.00590 6.06867 6.14945 6.18286 6.34706 6.62869 6.75976 6.79907 7.05960 7.08195 7.31600 7.44606 7.71072 7.83966 7.97600 8.12740 8.25921 8.57959 8.88860 8.90760 8.97055 10.31816 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.003036 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.565241 B = 9219.768960 C =10090.268681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.077 0.923 9 C 0.092 3.908 10 C -0.197 4.197 11 C -0.111 4.111 12 C -0.237 4.237 13 C -0.132 4.132 14 C 0.580 3.420 15 O -0.544 6.544 16 N -0.622 5.622 17 C 0.102 3.898 18 C -0.127 4.127 19 C -0.119 4.119 20 H 0.102 0.898 21 C 0.246 3.754 22 O -0.371 6.371 23 C 0.017 3.983 24 C 0.019 3.981 25 O -0.382 6.382 26 C 0.121 3.879 27 C -0.081 4.081 28 H 0.281 0.719 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 -15.078 -1.864 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.096 0.904 9 C 0.090 3.910 10 C -0.217 4.217 11 C -0.129 4.129 12 C -0.256 4.256 13 C -0.135 4.135 14 C 0.373 3.627 15 O -0.422 6.422 16 N -0.357 5.357 17 C -0.021 4.021 18 C -0.165 4.165 19 C -0.138 4.138 20 H 0.120 0.880 21 C 0.150 3.850 22 O -0.291 6.291 23 C -0.060 4.060 24 C -0.057 4.057 25 O -0.303 6.303 26 C -0.002 4.002 27 C -0.102 4.102 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.145 0.855 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.782 -14.302 -2.174 19.304 hybrid contribution 0.257 0.691 0.078 0.741 sum -12.526 -13.611 -2.096 18.616 Atomic orbital electron populations 1.69728 1.07233 1.29188 1.37021 1.25911 0.94956 1.01277 0.92601 0.86221 0.79739 0.80120 0.79694 1.20369 1.19118 1.19025 1.19470 0.94681 0.89955 1.45577 0.90446 1.17640 0.91954 0.92322 0.89073 1.21290 1.00849 0.95154 1.04379 1.20506 0.95223 0.96734 1.00436 1.21785 0.98197 0.99293 1.06277 1.19494 0.93514 0.96868 1.03614 1.18624 0.85008 0.79096 0.79989 1.90701 1.72512 1.41068 1.37900 1.48321 1.14875 1.17588 1.54964 1.22467 0.96508 0.85953 0.97146 1.22753 0.93195 0.97645 1.02915 1.22833 0.94383 0.96816 0.99773 0.87967 1.23920 0.84553 0.89455 0.87027 1.89219 1.33192 1.83618 1.23103 1.24353 0.87478 0.97255 0.96904 1.24229 1.01993 0.98185 0.81321 1.88909 1.49269 1.68471 1.23664 1.21937 0.82907 0.98183 0.97154 1.21926 0.95479 0.94852 0.97902 0.90777 0.88610 0.88884 0.85514 0.90305 0.90066 0.89812 0.89901 0.89262 0.90634 0.87257 0.88252 0.90258 0.90803 0.91328 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.08 10.60 55.55 0.59 -21.49 16 2 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 3 Si 0.92 19.49 29.56 -169.99 -5.03 14.47 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.47 -12.60 9.04 -37.73 -0.34 -12.94 16 8 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 9 C 0.09 2.50 5.55 -106.87 -0.59 1.91 16 10 C -0.20 -4.74 9.78 -38.82 -0.38 -5.12 16 11 C -0.11 -2.37 10.01 -39.73 -0.40 -2.77 16 12 C -0.24 -5.03 8.60 -38.92 -0.33 -5.37 16 13 C -0.13 -3.23 5.86 -105.04 -0.62 -3.85 16 14 C 0.58 13.57 7.80 -12.31 -0.10 13.47 16 15 O -0.54 -14.49 16.67 5.32 0.09 -14.41 16 16 N -0.62 -11.38 3.33 -175.93 -0.59 -11.96 16 17 C 0.10 1.45 4.88 -3.06 -0.01 1.43 16 18 C -0.13 -1.35 6.37 -24.90 -0.16 -1.51 16 19 C -0.12 -1.39 3.17 -88.59 -0.28 -1.68 16 20 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 21 C 0.25 2.51 3.77 37.16 0.14 2.65 16 22 O -0.37 -3.87 9.48 -59.05 -0.56 -4.43 16 23 C 0.02 0.12 7.95 38.17 0.30 0.42 16 24 C 0.02 0.15 8.07 38.17 0.31 0.46 16 25 O -0.38 -4.19 11.11 -59.05 -0.66 -4.85 16 26 C 0.12 1.88 6.20 -2.65 -0.02 1.87 16 27 C -0.08 -2.24 8.21 -38.44 -0.32 -2.56 16 28 H 0.28 7.14 8.30 -40.82 -0.34 6.81 16 29 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 30 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.13 2.21 2.74 -57.89 -0.16 2.05 16 32 H 0.08 1.10 6.78 -51.93 -0.35 0.75 16 33 H 0.08 1.17 6.67 -51.94 -0.35 0.82 16 34 H 0.08 0.87 7.47 -51.92 -0.39 0.48 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 42 H 0.07 1.07 7.06 -51.93 -0.37 0.70 16 43 H 0.14 4.29 5.74 -52.49 -0.30 3.99 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -32.62 346.59 -9.50 -42.11 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.69 Total: 7.22 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.89 Total: -11.89 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.00 Total: -33.46 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -1.13 Total: -23.68 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.62 -9.50 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928009077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.093 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds