Wall clock time and date at job start Tue Mar 31 2020 10:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 120.00122 * 2 1 4 4 H 1.48503 * 109.47154 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47303 * 120.00031 * 3 2 1 6 6 H 1.48498 * 109.47017 * 240.00162 * 3 2 1 7 7 C 1.39934 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99795 * 175.51309 * 7 2 1 9 9 C 1.41440 * 120.00412 * 355.50329 * 7 2 1 10 10 C 1.40781 * 120.18286 * 214.50662 * 9 7 2 11 11 C 1.37704 * 120.04312 * 179.74265 * 10 9 7 12 12 C 1.38377 * 120.41155 * 0.51012 * 11 10 9 13 13 C 1.39880 * 120.35335 * 359.76678 * 12 11 10 14 14 C 1.47888 * 120.01974 * 179.97438 * 13 12 11 15 15 O 1.21557 * 119.99808 * 188.25269 * 14 13 12 16 16 N 1.34776 * 120.00430 * 8.24939 * 14 13 12 17 17 C 1.47027 * 125.64436 * 354.82079 * 16 14 13 18 18 C 1.54325 * 107.26442 * 178.90372 * 17 16 14 19 19 C 1.55150 * 102.94507 * 337.80540 * 18 17 16 20 20 H 1.08990 * 111.00753 * 277.42559 * 19 18 17 21 21 C 1.53006 * 111.00139 * 153.57513 * 19 18 17 22 22 O 1.43747 * 109.63731 * 298.90904 * 21 19 18 23 23 C 1.44580 * 104.92096 * 215.70940 * 22 21 19 24 24 C 1.54915 * 101.63645 * 36.26993 * 23 22 21 25 25 O 1.43367 * 109.62914 * 179.69225 * 21 19 18 26 26 C 1.47424 * 125.64808 * 174.51354 * 16 14 13 27 27 C 1.39029 * 119.95434 * 359.97438 * 13 12 11 28 28 H 0.97002 * 119.99621 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.97682 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.79816 * 180.23404 * 11 10 9 31 31 H 1.07998 * 119.82009 * 179.74209 * 12 11 10 32 32 H 1.08996 * 109.87950 * 298.31765 * 17 16 14 33 33 H 1.08989 * 109.88186 * 59.33097 * 17 16 14 34 34 H 1.09009 * 110.72049 * 96.17529 * 18 17 16 35 35 H 1.09003 * 110.71690 * 219.26294 * 18 17 16 36 36 H 1.09004 * 109.62230 * 59.30394 * 21 19 18 37 37 H 1.08994 * 111.08879 * 278.15825 * 23 22 21 38 38 H 1.09005 * 110.98025 * 154.32626 * 23 22 21 39 39 H 1.09006 * 110.69079 * 205.96218 * 24 23 22 40 40 H 1.08994 * 110.84964 * 82.82017 * 24 23 22 41 41 H 1.08996 * 110.36765 * 323.00323 * 26 16 14 42 42 H 1.08994 * 110.36567 * 85.33077 * 26 16 14 43 43 H 1.07994 * 120.20543 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7464 -0.0006 5 1 3.0961 1.6964 1.2125 6 1 3.0960 1.6963 -1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0855 -1.2133 -0.0737 9 6 1.3040 -2.4350 0.0949 10 6 1.8657 -3.5225 0.7905 11 6 1.1755 -4.7102 0.8862 12 6 -0.0669 -4.8482 0.2928 13 6 -0.6384 -3.7805 -0.4073 14 6 -1.9664 -3.9363 -1.0392 15 8 -2.3970 -3.0664 -1.7710 16 7 -2.6992 -5.0426 -0.8037 17 6 -2.2588 -6.2138 -0.0316 18 6 -3.4341 -7.2136 -0.0056 19 6 -4.6648 -6.3106 -0.2834 20 1 -5.0059 -5.8232 0.6298 21 6 -5.7968 -7.1106 -0.9312 22 8 -5.3524 -7.6445 -2.1897 23 6 -6.5137 -7.5880 -3.0490 24 6 -7.1812 -6.2690 -2.5860 25 8 -6.9196 -6.2512 -1.1681 26 6 -4.0773 -5.2762 -1.2723 27 6 0.0429 -2.5729 -0.5087 28 1 -0.4850 0.8401 -0.0004 29 1 2.8369 -3.4239 1.2525 30 1 1.6085 -5.5407 1.4239 31 1 -0.5980 -5.7854 0.3703 32 1 -1.3939 -6.6707 -0.5123 33 1 -2.0024 -5.9130 0.9841 34 1 -3.3205 -7.9628 -0.7893 35 1 -3.5141 -7.6893 0.9719 36 1 -6.0927 -7.9263 -0.2714 37 1 -7.1714 -8.4398 -2.8760 38 1 -6.2210 -7.5301 -4.0974 39 1 -8.2537 -6.2914 -2.7796 40 1 -6.7210 -5.4095 -3.0733 41 1 -4.6514 -4.3503 -1.2389 42 1 -4.0703 -5.6830 -2.2834 43 1 -0.3943 -1.7461 -1.0486 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928009077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:59 Heat of formation + Delta-G solvation = -97.599861 kcal Electronic energy + Delta-G solvation = -26552.108510 eV Core-core repulsion = 22755.123448 eV Total energy + Delta-G solvation = -3796.985062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81005 -40.97446 -38.98568 -38.26898 -36.01175 -35.57767 -33.72086 -31.93643 -31.32029 -30.83198 -29.75715 -27.24363 -26.48999 -24.66603 -24.03181 -23.21477 -22.52934 -21.39280 -20.74775 -19.39050 -18.19485 -17.86272 -17.78133 -17.35614 -17.17997 -16.49544 -16.34688 -16.31064 -15.56494 -15.14537 -15.02047 -14.83261 -14.70054 -14.41275 -14.32377 -14.02858 -13.86455 -13.68853 -13.57889 -13.40797 -13.16540 -12.81996 -12.67540 -12.52021 -12.34687 -12.11569 -11.91100 -11.83614 -11.68965 -11.30068 -11.16114 -11.13424 -10.74632 -10.58504 -9.79525 -9.43034 -9.25231 -8.51705 -6.44207 0.35010 1.02710 1.35519 1.46721 1.49657 1.94464 2.05862 2.21563 2.46997 2.81578 2.91345 3.37156 3.57127 3.62967 3.67810 3.82718 3.92885 4.03960 4.18609 4.24578 4.30961 4.36598 4.48637 4.52044 4.56433 4.61925 4.67549 4.74410 4.80603 4.85088 4.89046 4.97644 5.06409 5.10527 5.17739 5.24526 5.34138 5.39988 5.54024 5.84024 5.93385 6.06341 6.09742 6.30046 6.42392 6.63314 6.90728 6.96201 7.18338 8.40207 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.003036 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.565241 B = 9219.768960 C =10090.268681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.020 3.980 3 Si 0.992 3.008 4 H -0.275 1.275 5 H -0.254 1.254 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.082 0.918 9 C 0.058 3.942 10 C -0.199 4.199 11 C -0.106 4.106 12 C -0.215 4.215 13 C -0.146 4.146 14 C 0.569 3.431 15 O -0.596 6.596 16 N -0.615 5.615 17 C 0.085 3.915 18 C -0.108 4.108 19 C -0.112 4.112 20 H 0.103 0.897 21 C 0.248 3.752 22 O -0.390 6.390 23 C 0.017 3.983 24 C 0.012 3.988 25 O -0.404 6.404 26 C 0.118 3.882 27 C -0.121 4.121 28 H 0.281 0.719 29 H 0.112 0.888 30 H 0.145 0.855 31 H 0.174 0.826 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 -18.740 -0.442 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.192 4.192 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.178 1.178 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.100 0.900 9 C 0.056 3.944 10 C -0.219 4.219 11 C -0.124 4.124 12 C -0.233 4.233 13 C -0.149 4.149 14 C 0.361 3.639 15 O -0.478 6.478 16 N -0.348 5.348 17 C -0.036 4.036 18 C -0.146 4.146 19 C -0.131 4.131 20 H 0.121 0.879 21 C 0.152 3.848 22 O -0.311 6.311 23 C -0.059 4.059 24 C -0.064 4.064 25 O -0.325 6.325 26 C -0.005 4.005 27 C -0.142 4.142 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.162 0.838 31 H 0.191 0.809 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.950 -18.041 -0.734 22.220 hybrid contribution 0.209 1.608 -0.387 1.667 sum -12.741 -16.434 -1.120 20.824 Atomic orbital electron populations 1.69902 1.09019 1.29866 1.38786 1.26895 0.95659 1.04958 0.91648 0.85107 0.78314 0.75189 0.80158 1.19941 1.17831 1.18327 1.19784 0.95034 0.90995 1.47505 0.89991 1.17989 0.92329 0.93763 0.90311 1.21613 1.01570 0.95243 1.03464 1.21049 0.94709 0.97074 0.99539 1.22424 0.98031 0.99747 1.03133 1.19774 0.94131 0.96923 1.04044 1.18617 0.85267 0.80101 0.79886 1.90658 1.73538 1.43355 1.40261 1.48338 1.15448 1.17073 1.53943 1.22801 0.98896 0.85165 0.96720 1.22731 0.90086 0.96301 1.05483 1.22860 0.95627 0.96013 0.98622 0.87859 1.24023 0.83605 0.89644 0.87484 1.89184 1.34771 1.83530 1.23580 1.24560 0.86860 0.97374 0.97072 1.24403 1.03597 0.98316 0.80087 1.88892 1.49459 1.69027 1.25148 1.22071 0.81403 0.98371 0.98621 1.21679 0.96958 0.95458 1.00101 0.90880 0.87001 0.83769 0.80905 0.89218 0.89412 0.88784 0.86099 0.86363 0.88206 0.86089 0.85769 0.91908 0.93536 0.91420 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.87 10.60 21.82 0.23 -49.64 16 2 C 0.02 1.07 5.42 85.25 0.46 1.53 16 3 Si 0.99 41.50 29.56 68.60 2.03 43.53 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.50 -28.43 9.04 23.47 0.21 -28.21 16 8 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 9 C 0.06 3.27 5.55 -21.32 -0.12 3.15 16 10 C -0.20 -9.45 9.78 22.77 0.22 -9.23 16 11 C -0.11 -4.21 10.01 22.18 0.22 -3.98 16 12 C -0.22 -8.67 8.60 22.70 0.20 -8.47 16 13 C -0.15 -7.33 5.86 -20.13 -0.12 -7.45 16 14 C 0.57 27.74 7.80 86.80 0.68 28.42 16 15 O -0.60 -34.24 16.67 -3.90 -0.06 -34.31 16 16 N -0.62 -22.34 3.33 -828.80 -2.76 -25.09 16 17 C 0.09 2.13 4.88 86.73 0.42 2.55 16 18 C -0.11 -1.82 6.37 31.78 0.20 -1.61 16 19 C -0.11 -2.36 3.17 -9.48 -0.03 -2.39 16 20 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 21 C 0.25 4.35 3.77 71.98 0.27 4.62 16 22 O -0.39 -7.07 9.48 -126.20 -1.20 -8.27 16 23 C 0.02 0.20 7.95 72.64 0.58 0.78 16 24 C 0.01 0.18 8.07 72.64 0.59 0.76 16 25 O -0.40 -8.23 11.11 -126.20 -1.40 -9.63 16 26 C 0.12 3.67 6.20 86.78 0.54 4.21 16 27 C -0.12 -7.11 8.21 23.01 0.19 -6.92 16 28 H 0.28 15.35 8.30 -92.71 -0.77 14.58 16 29 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 30 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 31 H 0.17 5.29 2.74 -7.99 -0.02 5.27 16 32 H 0.09 2.11 6.78 -2.39 -0.02 2.10 16 33 H 0.09 2.15 6.67 -2.39 -0.02 2.13 16 34 H 0.09 1.48 7.47 -2.38 -0.02 1.46 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.12 1.11 8.14 -2.38 -0.02 1.10 16 39 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.69 8.09 -2.39 -0.02 1.67 16 42 H 0.07 2.13 7.06 -2.39 -0.02 2.11 16 43 H 0.10 6.78 5.74 -2.91 -0.02 6.76 16 Total: -1.00 -79.15 346.59 2.37 -76.77 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 1.02 Total: 28.88 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 4.51 Total: -22.24 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -2.53 Total: -74.73 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -2.66 Total: -52.21 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -79.15 2.37 -76.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928009077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.825 kcal (2) G-P(sol) polarization free energy of solvation -79.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds