Wall clock time and date at job start Tue Mar 31 2020 11:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47115 * 179.97438 * 9 7 2 11 11 C 1.46508 * 120.00137 * 270.00167 * 10 9 7 12 12 C 1.52994 * 109.47274 * 89.99576 * 11 10 9 13 13 F 1.39897 * 109.47026 * 60.00150 * 12 11 10 14 14 F 1.39898 * 109.47098 * 180.02562 * 12 11 10 15 15 F 1.39898 * 109.47192 * 300.00590 * 12 11 10 16 16 C 1.34777 * 120.00178 * 89.99820 * 10 9 7 17 17 O 1.21279 * 119.99709 * 0.02562 * 16 10 9 18 18 C 1.50698 * 119.99969 * 179.97438 * 16 10 9 19 19 H 1.09001 * 115.51333 * 325.36051 * 18 16 10 20 20 C 1.53010 * 117.42892 * 110.62141 * 18 16 10 21 21 H 1.08998 * 119.98441 * 355.25366 * 20 18 16 22 22 C 1.53004 * 117.43087 * 179.97438 * 18 16 10 23 23 H 1.09004 * 119.98487 * 4.74553 * 22 18 16 24 24 C 1.55925 * 117.17718 * 159.54946 * 22 18 16 25 25 H 1.08996 * 115.91955 * 262.24341 * 24 22 18 26 26 C 1.57834 * 103.60164 * 133.00474 * 24 22 18 27 27 C 1.54578 * 105.33728 * 290.61190 * 26 24 22 28 28 C 1.55923 * 117.17318 * 199.33526 * 20 18 16 29 29 H 1.08998 * 115.92078 * 97.76616 * 28 20 18 30 30 C 1.56948 * 100.65089 * 330.69703 * 28 20 18 31 31 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 32 32 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 33 33 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 34 34 H 1.08997 * 109.47247 * 210.00381 * 11 10 9 35 35 H 1.08996 * 109.46600 * 329.99810 * 11 10 9 36 36 H 1.08991 * 110.12818 * 171.56644 * 26 24 22 37 37 H 1.09006 * 110.10538 * 49.64357 * 26 24 22 38 38 H 1.09001 * 110.40282 * 241.13573 * 27 26 24 39 39 H 1.09003 * 110.40914 * 118.71607 * 27 26 24 40 40 H 1.09002 * 112.02394 * 63.18059 * 30 28 20 41 41 H 1.09000 * 112.02620 * 189.69656 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2030 -3.6126 0.0164 11 6 2.6791 -4.1750 -1.2499 12 6 3.9411 -3.4334 -1.6949 13 9 4.9337 -3.5752 -0.7193 14 9 4.3953 -3.9700 -2.9044 15 9 3.6480 -2.0765 -1.8680 16 6 2.6410 -4.1197 1.1858 17 8 2.2466 -3.6545 2.2341 18 6 3.6198 -5.2656 1.1908 19 1 3.4994 -5.9894 0.3847 20 6 5.0441 -4.9737 1.6675 21 1 5.3382 -3.9532 1.9126 22 6 4.0783 -5.7949 2.5511 23 1 3.6400 -5.3971 3.4664 24 6 4.6722 -7.2361 2.5911 25 1 3.9847 -8.0265 2.8924 26 6 5.9866 -7.0723 3.4494 27 6 6.9525 -6.2510 2.5652 28 6 6.1553 -5.9856 1.2522 29 1 6.7503 -5.7092 0.3818 30 6 5.3182 -7.3091 1.1480 31 1 -0.4850 0.8401 -0.0041 32 1 0.6241 -2.5528 0.9015 33 1 0.6247 -2.5609 -0.8785 34 1 2.9073 -5.2322 -1.1150 35 1 1.9057 -4.0645 -2.0100 36 1 6.4136 -8.0501 3.6718 37 1 5.7669 -6.5355 4.3723 38 1 7.8545 -6.8250 2.3530 39 1 7.2062 -5.3094 3.0524 40 1 4.5573 -7.2513 0.3696 41 1 5.9538 -8.1864 1.0274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933804790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:40 Heat of formation + Delta-G solvation = -142.405102 kcal Electronic energy + Delta-G solvation = -28775.261894 eV Core-core repulsion = 24434.477191 eV Total energy + Delta-G solvation = -4340.784704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.50518 -47.11284 -46.84186 -41.19333 -38.72290 -35.30096 -33.42518 -32.62156 -29.22763 -28.94757 -28.12716 -27.22122 -24.54880 -23.07613 -22.32612 -21.63374 -19.82482 -18.64662 -18.49145 -18.04309 -17.97356 -17.22244 -16.64246 -16.24998 -15.95180 -15.43706 -15.21954 -14.49198 -14.06093 -13.83310 -13.78700 -13.51153 -13.41937 -13.10206 -13.05583 -12.92910 -12.64814 -12.39740 -12.21158 -12.00745 -11.74752 -11.59895 -11.50701 -11.28941 -11.26277 -11.16308 -10.89616 -10.84744 -10.64491 -10.34546 -10.13532 -9.70550 -9.59633 -9.48962 -9.07264 -8.42860 -8.00275 -6.04614 -4.06562 2.86934 3.31072 3.32162 3.39451 3.42705 3.52020 4.03249 4.24315 4.33030 4.42015 4.44307 4.47029 4.51310 4.77223 5.00564 5.06394 5.11807 5.14555 5.19463 5.26493 5.31089 5.32455 5.41488 5.43237 5.49805 5.55269 5.73881 5.88407 5.90431 6.01272 6.07077 6.09585 6.24671 6.31247 6.40411 6.84944 7.27627 7.36749 7.92400 8.09467 8.17859 8.79425 8.98048 9.57636 11.04399 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.004959 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.437210 B = 5645.269044 C = 6223.040405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.243 3.757 10 N -0.594 5.594 11 C 0.078 3.922 12 C 0.425 3.575 13 F -0.182 7.182 14 F -0.197 7.197 15 F -0.154 7.154 16 C 0.543 3.457 17 O -0.522 6.522 18 C -0.169 4.169 19 H 0.118 0.882 20 C -0.121 4.121 21 H 0.116 0.884 22 C -0.135 4.135 23 H 0.121 0.879 24 C -0.075 4.075 25 H 0.105 0.895 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.070 4.070 29 H 0.101 0.899 30 C -0.134 4.134 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.898 -16.175 -0.929 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.125 3.875 10 N -0.325 5.325 11 C -0.050 4.050 12 C 0.369 3.631 13 F -0.163 7.163 14 F -0.179 7.179 15 F -0.135 7.135 16 C 0.331 3.669 17 O -0.397 6.397 18 C -0.190 4.190 19 H 0.135 0.865 20 C -0.140 4.140 21 H 0.134 0.866 22 C -0.153 4.153 23 H 0.139 0.861 24 C -0.093 4.093 25 H 0.123 0.877 26 C -0.154 4.154 27 C -0.154 4.154 28 C -0.089 4.089 29 H 0.119 0.881 30 C -0.172 4.172 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.528 -15.743 -0.319 18.941 hybrid contribution 0.588 1.296 -0.300 1.455 sum 11.116 -14.447 -0.619 18.239 Atomic orbital electron populations 1.69937 1.05954 1.26880 1.50858 1.24874 0.94796 0.99141 0.95106 0.86476 0.80220 0.83508 0.77509 1.19722 1.20962 1.20976 1.21512 0.93734 0.90200 1.50384 0.91724 1.19499 0.87112 0.81971 0.98934 1.48131 1.45759 1.36031 1.02601 1.22548 0.93693 0.97788 0.91007 1.21473 0.86919 0.80265 0.74482 1.93177 1.64774 1.95683 1.62710 1.93126 1.90826 1.86367 1.47603 1.93365 1.92937 1.32285 1.94905 1.19434 0.81001 0.82742 0.83750 1.90682 1.57308 1.60908 1.30849 1.22455 0.96594 0.99929 1.00017 0.86473 1.23460 0.88199 0.99360 1.02981 0.86623 1.23586 1.02083 0.95351 0.94309 0.86113 1.23772 0.95389 0.94751 0.95374 0.87735 1.22834 0.94742 0.99577 0.98279 1.22496 0.97453 0.99997 0.95458 1.23119 0.94980 0.93371 0.97388 0.88101 1.23912 0.98890 0.97459 0.96901 0.92834 0.93213 0.94640 0.87525 0.86340 0.91940 0.91657 0.91778 0.91526 0.90950 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.25 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.52 -14.43 7.68 -34.44 -0.26 -14.70 16 8 H 0.06 1.83 6.43 -52.49 -0.34 1.50 16 9 C 0.24 6.11 5.14 -5.20 -0.03 6.08 16 10 N -0.59 -12.02 2.40 -175.07 -0.42 -12.44 16 11 C 0.08 1.19 5.38 -4.04 -0.02 1.17 16 12 C 0.42 7.13 3.29 37.15 0.12 7.25 16 13 F -0.18 -3.10 14.22 2.25 0.03 -3.07 16 14 F -0.20 -2.93 17.32 2.25 0.04 -2.90 16 15 F -0.15 -3.22 13.88 2.25 0.03 -3.19 16 16 C 0.54 11.02 7.12 -10.99 -0.08 10.94 16 17 O -0.52 -12.87 15.93 5.56 0.09 -12.79 16 18 C -0.17 -2.54 3.64 -91.77 -0.33 -2.87 16 19 H 0.12 1.46 4.31 -51.93 -0.22 1.24 16 20 C -0.12 -1.70 4.55 -88.25 -0.40 -2.11 16 21 H 0.12 1.89 8.14 -51.93 -0.42 1.46 16 22 C -0.13 -1.85 5.85 -88.25 -0.52 -2.36 16 23 H 0.12 1.88 7.82 -51.93 -0.41 1.48 16 24 C -0.07 -0.76 5.45 -83.50 -0.46 -1.22 16 25 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 26 C -0.12 -1.10 6.19 -23.25 -0.14 -1.24 16 27 C -0.12 -1.13 6.21 -24.36 -0.15 -1.28 16 28 C -0.07 -0.76 5.17 -85.38 -0.44 -1.20 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 C -0.13 -1.29 6.20 -21.68 -0.13 -1.42 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.05 1.41 7.42 -51.93 -0.39 1.03 16 33 H 0.04 0.89 7.89 -51.93 -0.41 0.48 16 34 H 0.11 1.23 6.00 -51.93 -0.31 0.91 16 35 H 0.12 1.63 7.89 -51.93 -0.41 1.22 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 40 H 0.07 0.69 5.92 -51.93 -0.31 0.39 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -32.14 332.15 -7.75 -39.89 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.30 Total: -0.82 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.94 Total: -1.28 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.32 Total: -38.11 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 0.10 Total: -9.16 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.14 -7.75 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933804790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.513 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds