Wall clock time and date at job start Tue Mar 31 2020 11:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47115 * 179.97438 * 9 7 2 11 11 C 1.46508 * 120.00137 * 270.00167 * 10 9 7 12 12 C 1.52994 * 109.47274 * 89.99576 * 11 10 9 13 13 F 1.39897 * 109.47026 * 60.00150 * 12 11 10 14 14 F 1.39898 * 109.47098 * 180.02562 * 12 11 10 15 15 F 1.39898 * 109.47192 * 300.00590 * 12 11 10 16 16 C 1.34777 * 120.00178 * 89.99820 * 10 9 7 17 17 O 1.21279 * 119.99709 * 0.02562 * 16 10 9 18 18 C 1.50698 * 119.99969 * 179.97438 * 16 10 9 19 19 H 1.09001 * 115.51333 * 325.36051 * 18 16 10 20 20 C 1.53010 * 117.42892 * 110.62141 * 18 16 10 21 21 H 1.08998 * 119.98441 * 355.25366 * 20 18 16 22 22 C 1.53004 * 117.43087 * 179.97438 * 18 16 10 23 23 H 1.09004 * 119.98487 * 4.74553 * 22 18 16 24 24 C 1.55925 * 117.17718 * 159.54946 * 22 18 16 25 25 H 1.08996 * 115.91955 * 262.24341 * 24 22 18 26 26 C 1.57834 * 103.60164 * 133.00474 * 24 22 18 27 27 C 1.54578 * 105.33728 * 290.61190 * 26 24 22 28 28 C 1.55923 * 117.17318 * 199.33526 * 20 18 16 29 29 H 1.08998 * 115.92078 * 97.76616 * 28 20 18 30 30 C 1.56948 * 100.65089 * 330.69703 * 28 20 18 31 31 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 32 32 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 33 33 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 34 34 H 1.08997 * 109.47247 * 210.00381 * 11 10 9 35 35 H 1.08996 * 109.46600 * 329.99810 * 11 10 9 36 36 H 1.08991 * 110.12818 * 171.56644 * 26 24 22 37 37 H 1.09006 * 110.10538 * 49.64357 * 26 24 22 38 38 H 1.09001 * 110.40282 * 241.13573 * 27 26 24 39 39 H 1.09003 * 110.40914 * 118.71607 * 27 26 24 40 40 H 1.09002 * 112.02394 * 63.18059 * 30 28 20 41 41 H 1.09000 * 112.02620 * 189.69656 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2030 -3.6126 0.0164 11 6 2.6791 -4.1750 -1.2499 12 6 3.9411 -3.4334 -1.6949 13 9 4.9337 -3.5752 -0.7193 14 9 4.3953 -3.9700 -2.9044 15 9 3.6480 -2.0765 -1.8680 16 6 2.6410 -4.1197 1.1858 17 8 2.2466 -3.6545 2.2341 18 6 3.6198 -5.2656 1.1908 19 1 3.4994 -5.9894 0.3847 20 6 5.0441 -4.9737 1.6675 21 1 5.3382 -3.9532 1.9126 22 6 4.0783 -5.7949 2.5511 23 1 3.6400 -5.3971 3.4664 24 6 4.6722 -7.2361 2.5911 25 1 3.9847 -8.0265 2.8924 26 6 5.9866 -7.0723 3.4494 27 6 6.9525 -6.2510 2.5652 28 6 6.1553 -5.9856 1.2522 29 1 6.7503 -5.7092 0.3818 30 6 5.3182 -7.3091 1.1480 31 1 -0.4850 0.8401 -0.0041 32 1 0.6241 -2.5528 0.9015 33 1 0.6247 -2.5609 -0.8785 34 1 2.9073 -5.2322 -1.1150 35 1 1.9057 -4.0645 -2.0100 36 1 6.4136 -8.0501 3.6718 37 1 5.7669 -6.5355 4.3723 38 1 7.8545 -6.8250 2.3530 39 1 7.2062 -5.3094 3.0524 40 1 4.5573 -7.2513 0.3696 41 1 5.9538 -8.1864 1.0274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933804790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:40 Heat of formation + Delta-G solvation = -160.576815 kcal Electronic energy + Delta-G solvation = -28776.049879 eV Core-core repulsion = 24434.477191 eV Total energy + Delta-G solvation = -4341.572688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.87681 -48.42120 -48.32306 -42.25217 -40.24774 -36.99293 -34.92683 -34.29386 -30.88685 -29.79416 -29.21202 -28.67850 -26.19116 -24.53359 -23.89426 -22.54845 -21.03022 -19.83492 -19.54822 -19.44466 -19.38772 -18.65246 -18.35263 -17.86588 -17.23308 -16.78462 -16.28433 -16.22209 -15.62169 -15.28750 -15.20407 -14.92801 -14.79132 -14.51172 -14.50580 -14.36179 -13.98141 -13.77268 -13.63980 -13.24762 -13.23507 -13.08761 -12.86150 -12.61346 -12.43843 -12.37186 -12.19088 -12.14371 -11.96166 -11.72855 -11.67160 -11.18237 -10.80739 -10.64931 -10.63287 -10.51163 -9.79094 -8.23319 -6.31737 1.32275 1.33501 1.38086 1.46452 1.89008 2.05415 2.38163 2.82159 3.02084 3.05815 3.15123 3.20747 3.49653 3.59759 3.62449 3.81978 3.94866 4.02606 4.16331 4.20717 4.22622 4.37336 4.46686 4.49878 4.61819 4.70770 4.86117 4.95602 5.07009 5.11610 5.18283 5.24833 5.27115 5.29844 5.30352 5.41188 5.44468 5.54779 5.75064 6.03202 6.43633 6.73806 7.19227 7.37730 8.85315 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.004959 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.437210 B = 5645.269044 C = 6223.040405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.281 1.281 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.257 3.743 10 N -0.598 5.598 11 C 0.074 3.926 12 C 0.425 3.575 13 F -0.184 7.184 14 F -0.181 7.181 15 F -0.183 7.183 16 C 0.534 3.466 17 O -0.581 6.581 18 C -0.168 4.168 19 H 0.154 0.846 20 C -0.124 4.124 21 H 0.081 0.919 22 C -0.136 4.136 23 H 0.090 0.910 24 C -0.066 4.066 25 H 0.123 0.877 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.065 4.065 29 H 0.109 0.891 30 C -0.125 4.125 31 H 0.265 0.735 32 H 0.007 0.993 33 H 0.036 0.964 34 H 0.155 0.845 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.864 -18.799 -2.234 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.207 1.207 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.137 3.863 10 N -0.328 5.328 11 C -0.052 4.052 12 C 0.369 3.631 13 F -0.166 7.166 14 F -0.162 7.162 15 F -0.165 7.165 16 C 0.325 3.675 17 O -0.460 6.460 18 C -0.188 4.188 19 H 0.171 0.829 20 C -0.143 4.143 21 H 0.099 0.901 22 C -0.155 4.155 23 H 0.108 0.892 24 C -0.084 4.084 25 H 0.141 0.859 26 C -0.153 4.153 27 C -0.154 4.154 28 C -0.084 4.084 29 H 0.127 0.873 30 C -0.162 4.162 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.054 0.946 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.518 -18.391 -1.661 22.309 hybrid contribution -0.004 2.118 0.136 2.123 sum 12.515 -16.272 -1.526 20.585 Atomic orbital electron populations 1.70028 1.07123 1.27785 1.51809 1.25641 0.95632 1.02344 0.95001 0.85590 0.78755 0.79906 0.77977 1.19923 1.19460 1.20720 1.21702 0.93294 0.91572 1.49754 0.92799 1.18963 0.87517 0.83077 0.96733 1.47999 1.45034 1.34934 1.04844 1.22962 0.93478 0.99679 0.89041 1.21597 0.87439 0.79051 0.74970 1.93178 1.64950 1.95555 1.62905 1.93157 1.90673 1.85855 1.46554 1.93301 1.93217 1.34843 1.95102 1.20418 0.80920 0.83444 0.82753 1.90644 1.59407 1.63056 1.32920 1.22386 0.95659 0.98527 1.02225 0.82890 1.23498 0.88927 0.98796 1.03112 0.90087 1.23691 1.01282 0.98085 0.92434 0.89169 1.23888 0.95526 0.92284 0.96657 0.85947 1.22858 0.94333 1.00646 0.97511 1.22527 0.98331 0.99776 0.94774 1.23199 0.94159 0.92824 0.98173 0.87285 1.23927 0.98925 0.97325 0.96036 0.92566 0.97484 0.94624 0.82708 0.84430 0.89406 0.93003 0.89396 0.93101 0.90388 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 2 C 0.01 0.73 5.46 84.66 0.46 1.19 16 3 Si 0.95 46.48 29.54 68.60 2.03 48.50 16 4 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.52 -30.06 7.68 25.60 0.20 -29.86 16 8 H 0.05 3.15 6.43 -2.91 -0.02 3.14 16 9 C 0.26 13.46 5.14 85.63 0.44 13.90 16 10 N -0.60 -24.48 2.40 -826.18 -1.98 -26.47 16 11 C 0.07 2.13 5.38 86.38 0.46 2.59 16 12 C 0.43 13.64 3.29 71.98 0.24 13.87 16 13 F -0.18 -6.08 14.22 44.97 0.64 -5.44 16 14 F -0.18 -4.88 17.32 44.97 0.78 -4.10 16 15 F -0.18 -7.66 13.88 44.97 0.62 -7.03 16 16 C 0.53 22.25 7.12 87.66 0.62 22.87 16 17 O -0.58 -30.46 15.93 -3.03 -0.05 -30.51 16 18 C -0.17 -4.86 3.64 -11.54 -0.04 -4.90 16 19 H 0.15 3.25 4.31 -2.39 -0.01 3.24 16 20 C -0.12 -3.43 4.55 -9.26 -0.04 -3.47 16 21 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 22 C -0.14 -3.67 5.85 -9.26 -0.05 -3.72 16 23 H 0.09 2.98 7.82 -2.38 -0.02 2.96 16 24 C -0.07 -1.13 5.45 -6.18 -0.03 -1.17 16 25 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 26 C -0.12 -1.85 6.19 32.85 0.20 -1.64 16 27 C -0.12 -1.94 6.21 32.13 0.20 -1.74 16 28 C -0.07 -1.22 5.17 -7.40 -0.04 -1.26 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 C -0.13 -1.80 6.20 33.86 0.21 -1.59 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.01 0.43 7.42 -2.39 -0.02 0.41 16 33 H 0.04 1.84 7.89 -2.39 -0.02 1.82 16 34 H 0.16 2.92 6.00 -2.39 -0.01 2.91 16 35 H 0.14 3.46 7.89 -2.39 -0.02 3.44 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.96 8.05 -2.38 -0.02 0.95 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 1.00 8.04 -2.39 -0.02 0.98 16 40 H 0.08 1.06 5.92 -2.39 -0.01 1.05 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.45 332.15 6.21 -68.24 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.06 Total: 7.37 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 2.83 Total: 5.06 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -1.70 Total: -82.09 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.05 Total: -30.51 kcal Atomic # 9 Polarization: -18.61 SS G_CDS: 2.04 Total: -16.57 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -74.45 6.21 -68.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933804790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.337 kcal (2) G-P(sol) polarization free energy of solvation -74.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds