Wall clock time and date at job start Tue Mar 31 2020 11:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48502 * 109.47182 * 240.00341 * 3 2 1 5 5 H 1.48506 * 109.47013 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47336 * 120.00169 * 3 2 1 7 7 C 1.37878 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00413 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47064 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47216 * 179.97438 * 11 10 9 13 13 C 1.34750 * 116.99837 * 179.97438 * 12 11 10 14 14 O 1.21510 * 120.00542 * 0.02562 * 13 12 11 15 15 C 1.47384 * 119.99699 * 180.02562 * 13 12 11 16 16 C 1.39748 * 120.20784 * 0.27673 * 15 13 12 17 17 C 1.37777 * 119.91838 * 180.27447 * 16 15 13 18 18 C 1.38582 * 120.33698 * 359.72588 * 17 16 15 19 19 C 1.38024 * 120.41560 * 359.97438 * 18 17 16 20 20 C 1.38847 * 120.07572 * 0.02562 * 19 18 17 21 21 N 1.39259 * 120.16610 * 179.97438 * 20 19 18 22 22 C 1.46768 * 124.34293 * 90.00795 * 21 20 19 23 23 C 1.54487 * 105.46844 * 197.01251 * 22 21 20 24 24 C 1.54619 * 101.76557 * 334.58255 * 23 22 21 25 25 C 1.34413 * 124.35551 * 270.00089 * 21 20 19 26 26 O 1.21282 * 124.93896 * 359.63314 * 25 21 20 27 27 H 0.97002 * 120.00128 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47364 * 60.00051 * 9 7 2 29 29 H 1.08997 * 109.47103 * 299.99873 * 9 7 2 30 30 H 1.08997 * 109.47708 * 59.99867 * 10 9 7 31 31 H 1.08997 * 109.47327 * 299.99644 * 10 9 7 32 32 H 1.09000 * 109.47166 * 60.00161 * 11 10 9 33 33 H 1.08997 * 109.47113 * 299.99577 * 11 10 9 34 34 H 1.08002 * 120.04261 * 359.97438 * 16 15 13 35 35 H 1.07999 * 119.83038 * 179.74382 * 17 16 15 36 36 H 1.07992 * 119.79366 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.95697 * 179.97438 * 19 18 17 38 38 H 1.09000 * 110.25007 * 78.01251 * 22 21 20 39 39 H 1.09004 * 110.24485 * 316.00957 * 22 21 20 40 40 H 1.08996 * 110.96729 * 92.70209 * 23 22 21 41 41 H 1.08999 * 110.96649 * 216.46453 * 23 22 21 42 42 H 1.09007 * 110.48907 * 143.47513 * 24 23 22 43 43 H 1.09001 * 110.48711 * 265.98708 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 8 2.4237 -6.0908 -0.0005 13 6 1.9086 -7.3359 0.0005 14 8 0.7040 -7.4952 0.0014 15 6 2.8064 -8.5048 0.0005 16 6 4.1925 -8.3267 0.0054 17 6 5.0262 -9.4235 -0.0004 18 6 4.4976 -10.7046 -0.0052 19 6 3.1308 -10.8965 -0.0038 20 6 2.2747 -9.8034 0.0020 21 7 0.8953 -9.9949 0.0029 22 6 0.0767 -10.1137 1.2152 23 6 -1.2586 -10.7369 0.7513 24 6 -1.3079 -10.3076 -0.7333 25 6 0.1426 -10.0944 -1.1063 26 8 0.5650 -10.0243 -2.2410 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8894 31 1 2.8718 -3.6044 -0.8905 32 1 0.8532 -5.0451 -0.8897 33 1 0.8539 -5.0446 0.8903 34 1 4.6096 -7.3305 0.0087 35 1 6.0972 -9.2843 -0.0008 36 1 5.1593 -11.5581 -0.0092 37 1 2.7268 -11.8981 -0.0080 38 1 -0.0974 -9.1298 1.6508 39 1 0.5662 -10.7660 1.9385 40 1 -1.2349 -11.8227 0.8427 41 1 -2.0981 -10.3183 1.3064 42 1 -1.7469 -11.0964 -1.3442 43 1 -1.8724 -9.3817 -0.8442 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115837462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:02 Heat of formation + Delta-G solvation = -94.775666 kcal Electronic energy + Delta-G solvation = -26021.996209 eV Core-core repulsion = 22225.133613 eV Total energy + Delta-G solvation = -3796.862596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26817 -39.92766 -38.69971 -36.58433 -36.27671 -34.00908 -33.32831 -32.02106 -31.38373 -29.47085 -27.75076 -27.15680 -24.70306 -23.33418 -23.06857 -22.07583 -21.07635 -20.37517 -19.75500 -17.99968 -17.52067 -16.81443 -16.78987 -16.27354 -16.14421 -15.58151 -15.29174 -14.97364 -14.54757 -14.47426 -14.15664 -13.83933 -13.81926 -13.31801 -13.13342 -12.95611 -12.84894 -12.31081 -12.13888 -12.07813 -11.89401 -11.75516 -11.71719 -11.25748 -10.95512 -10.69362 -10.64704 -10.40599 -10.37420 -10.08038 -9.73486 -9.52879 -9.36057 -9.18831 -9.13426 -9.02451 -8.38997 -6.03867 -4.07045 0.41035 0.91082 2.47738 2.54170 2.71820 2.83926 3.32229 3.36495 3.39102 3.43746 4.20648 4.30465 4.42473 4.49490 4.57059 4.60302 4.67474 4.82438 4.99876 5.04130 5.11375 5.26274 5.32027 5.38400 5.45937 5.53874 5.56758 5.56899 5.62484 5.76311 5.85486 5.95866 6.01813 6.05906 6.25890 6.47082 6.52984 6.65039 6.81723 6.88577 6.97010 7.59236 7.70490 7.90365 7.94349 8.07283 8.35300 8.98894 9.57190 11.07587 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.002757 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.838294 B =10154.105577 C =11320.037453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.071 3.929 12 O -0.353 6.353 13 C 0.503 3.497 14 O -0.500 6.500 15 C -0.118 4.118 16 C -0.055 4.055 17 C -0.128 4.128 18 C -0.080 4.080 19 C -0.125 4.125 20 C 0.205 3.795 21 N -0.574 5.574 22 C 0.110 3.890 23 C -0.128 4.128 24 C -0.149 4.149 25 C 0.534 3.466 26 O -0.527 6.527 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.023 -27.158 4.238 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.146 4.146 11 C -0.002 4.002 12 O -0.270 6.270 13 C 0.347 3.653 14 O -0.389 6.389 15 C -0.121 4.121 16 C -0.073 4.073 17 C -0.146 4.146 18 C -0.099 4.099 19 C -0.144 4.144 20 C 0.114 3.886 21 N -0.305 5.305 22 C -0.012 4.012 23 C -0.165 4.165 24 C -0.189 4.189 25 C 0.324 3.676 26 O -0.403 6.403 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.740 -26.981 3.627 27.480 hybrid contribution 0.289 1.122 0.053 1.160 sum 4.029 -25.860 3.680 26.429 Atomic orbital electron populations 1.69951 1.06098 1.26892 1.50428 1.25026 0.94880 0.99358 0.95166 0.86603 0.79538 0.82866 0.78677 1.20163 1.21246 1.20168 1.21133 0.93089 0.90683 1.51174 0.92472 1.19039 0.93816 0.90703 0.97662 1.21770 0.99965 0.90923 1.01969 1.23512 0.91169 0.83361 1.02122 1.86541 1.42422 1.14741 1.83302 1.20865 0.87104 0.83767 0.73546 1.90788 1.15962 1.86915 1.45245 1.19624 0.93742 0.90917 1.07815 1.21539 0.91249 1.00655 0.93902 1.21255 1.00569 0.92069 1.00662 1.21300 0.94500 0.97737 0.96368 1.21281 0.93294 0.98248 1.01604 1.17272 0.82844 0.90938 0.97545 1.45252 1.04056 1.72667 1.08568 1.22150 0.90697 1.01971 0.86351 1.22567 0.97257 1.01338 0.95384 1.22269 0.94305 1.04804 0.97530 1.20898 0.88708 0.74282 0.83744 1.90728 1.78036 1.50426 1.21063 0.92820 0.96233 0.96262 0.92129 0.92111 0.91518 0.91495 0.83579 0.84621 0.84815 0.84910 0.90105 0.90495 0.90019 0.88822 0.88085 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 11 C 0.07 1.35 5.48 37.16 0.20 1.56 16 12 O -0.35 -6.21 9.47 -40.63 -0.38 -6.60 16 13 C 0.50 8.49 7.89 34.45 0.27 8.77 16 14 O -0.50 -9.12 13.02 -19.27 -0.25 -9.37 16 15 C -0.12 -1.65 5.89 -104.83 -0.62 -2.27 16 16 C -0.05 -0.61 9.61 -39.19 -0.38 -0.99 16 17 C -0.13 -1.07 10.02 -39.62 -0.40 -1.46 16 18 C -0.08 -0.62 10.03 -39.53 -0.40 -1.02 16 19 C -0.12 -1.20 9.96 -39.43 -0.39 -1.59 16 20 C 0.20 2.60 5.37 -83.48 -0.45 2.16 16 21 N -0.57 -7.19 1.54 -112.03 -0.17 -7.36 16 22 C 0.11 0.99 6.89 -3.12 -0.02 0.97 16 23 C -0.13 -0.85 7.18 -25.10 -0.18 -1.03 16 24 C -0.15 -1.43 6.86 -26.75 -0.18 -1.62 16 25 C 0.53 7.63 7.06 -10.86 -0.08 7.55 16 26 O -0.53 -9.80 17.70 5.56 0.10 -9.70 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.15 1.54 7.61 -52.49 -0.40 1.14 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 38 H 0.08 0.85 7.34 -51.93 -0.38 0.47 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -35.55 367.90 -9.00 -44.55 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.24 Total: -2.98 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.31 Total: -4.50 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.56 Total: -33.58 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.54 Total: -25.67 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.55 -9.00 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115837462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.221 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds