Wall clock time and date at job start Tue Mar 31 2020 11:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48502 * 109.47182 * 240.00341 * 3 2 1 5 5 H 1.48506 * 109.47013 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47336 * 120.00169 * 3 2 1 7 7 C 1.37878 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00413 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47064 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47216 * 179.97438 * 11 10 9 13 13 C 1.34750 * 116.99837 * 179.97438 * 12 11 10 14 14 O 1.21510 * 120.00542 * 0.02562 * 13 12 11 15 15 C 1.47384 * 119.99699 * 180.02562 * 13 12 11 16 16 C 1.39748 * 120.20784 * 0.27673 * 15 13 12 17 17 C 1.37777 * 119.91838 * 180.27447 * 16 15 13 18 18 C 1.38582 * 120.33698 * 359.72588 * 17 16 15 19 19 C 1.38024 * 120.41560 * 359.97438 * 18 17 16 20 20 C 1.38847 * 120.07572 * 0.02562 * 19 18 17 21 21 N 1.39259 * 120.16610 * 179.97438 * 20 19 18 22 22 C 1.46768 * 124.34293 * 90.00795 * 21 20 19 23 23 C 1.54487 * 105.46844 * 197.01251 * 22 21 20 24 24 C 1.54619 * 101.76557 * 334.58255 * 23 22 21 25 25 C 1.34413 * 124.35551 * 270.00089 * 21 20 19 26 26 O 1.21282 * 124.93896 * 359.63314 * 25 21 20 27 27 H 0.97002 * 120.00128 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47364 * 60.00051 * 9 7 2 29 29 H 1.08997 * 109.47103 * 299.99873 * 9 7 2 30 30 H 1.08997 * 109.47708 * 59.99867 * 10 9 7 31 31 H 1.08997 * 109.47327 * 299.99644 * 10 9 7 32 32 H 1.09000 * 109.47166 * 60.00161 * 11 10 9 33 33 H 1.08997 * 109.47113 * 299.99577 * 11 10 9 34 34 H 1.08002 * 120.04261 * 359.97438 * 16 15 13 35 35 H 1.07999 * 119.83038 * 179.74382 * 17 16 15 36 36 H 1.07992 * 119.79366 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.95697 * 179.97438 * 19 18 17 38 38 H 1.09000 * 110.25007 * 78.01251 * 22 21 20 39 39 H 1.09004 * 110.24485 * 316.00957 * 22 21 20 40 40 H 1.08996 * 110.96729 * 92.70209 * 23 22 21 41 41 H 1.08999 * 110.96649 * 216.46453 * 23 22 21 42 42 H 1.09007 * 110.48907 * 143.47513 * 24 23 22 43 43 H 1.09001 * 110.48711 * 265.98708 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 8 2.4237 -6.0908 -0.0005 13 6 1.9086 -7.3359 0.0005 14 8 0.7040 -7.4952 0.0014 15 6 2.8064 -8.5048 0.0005 16 6 4.1925 -8.3267 0.0054 17 6 5.0262 -9.4235 -0.0004 18 6 4.4976 -10.7046 -0.0052 19 6 3.1308 -10.8965 -0.0038 20 6 2.2747 -9.8034 0.0020 21 7 0.8953 -9.9949 0.0029 22 6 0.0767 -10.1137 1.2152 23 6 -1.2586 -10.7369 0.7513 24 6 -1.3079 -10.3076 -0.7333 25 6 0.1426 -10.0944 -1.1063 26 8 0.5650 -10.0243 -2.2410 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8894 31 1 2.8718 -3.6044 -0.8905 32 1 0.8532 -5.0451 -0.8897 33 1 0.8539 -5.0446 0.8903 34 1 4.6096 -7.3305 0.0087 35 1 6.0972 -9.2843 -0.0008 36 1 5.1593 -11.5581 -0.0092 37 1 2.7268 -11.8981 -0.0080 38 1 -0.0974 -9.1298 1.6508 39 1 0.5662 -10.7660 1.9385 40 1 -1.2349 -11.8227 0.8427 41 1 -2.0981 -10.3183 1.3064 42 1 -1.7469 -11.0964 -1.3442 43 1 -1.8724 -9.3817 -0.8442 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115837462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:02 Heat of formation + Delta-G solvation = -114.669643 kcal Electronic energy + Delta-G solvation = -26022.858876 eV Core-core repulsion = 22225.133613 eV Total energy + Delta-G solvation = -3797.725263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26098 -41.16166 -39.60723 -37.84667 -37.47477 -35.98021 -34.09870 -33.79017 -32.51148 -30.27211 -29.04922 -28.56482 -26.03432 -24.71021 -24.09829 -22.83638 -22.26584 -22.19850 -20.69163 -19.10501 -18.75229 -18.42574 -17.74874 -17.70507 -17.63964 -16.56085 -16.46674 -16.10906 -15.82157 -15.72503 -15.48199 -14.79978 -14.76142 -14.64566 -14.12547 -14.04795 -13.94747 -13.83037 -13.63290 -13.49594 -13.00088 -12.82050 -12.56220 -12.53648 -12.40977 -12.39812 -12.13076 -11.98771 -11.77921 -11.49430 -11.47370 -11.28540 -11.12588 -10.59380 -10.18332 -9.96954 -9.93653 -8.23976 -6.36116 -0.50946 0.14415 1.39057 1.40005 1.43547 1.44166 1.48871 1.52709 1.92045 2.39724 2.58573 3.09753 3.42309 3.48053 3.62494 3.75577 3.91339 3.96570 3.98032 4.02505 4.10627 4.26582 4.28830 4.31749 4.36177 4.58968 4.63911 4.72888 4.74510 4.78232 4.84949 5.01394 5.02229 5.14074 5.15715 5.21480 5.29436 5.36113 5.45004 5.51788 5.58549 5.76337 5.83676 5.96186 6.15612 6.56094 6.79186 7.05991 7.33512 8.88214 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.002757 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.838294 B =10154.105577 C =11320.037453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.028 3.972 10 C -0.092 4.092 11 C 0.083 3.917 12 O -0.353 6.353 13 C 0.496 3.504 14 O -0.524 6.524 15 C -0.155 4.155 16 C -0.063 4.063 17 C -0.119 4.119 18 C -0.061 4.061 19 C -0.126 4.126 20 C 0.178 3.822 21 N -0.573 5.573 22 C 0.102 3.898 23 C -0.111 4.111 24 C -0.148 4.148 25 C 0.517 3.483 26 O -0.586 6.586 27 H 0.265 0.735 28 H -0.006 1.006 29 H -0.002 1.002 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.146 0.854 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.154 0.846 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 -29.087 5.312 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.009 4.009 10 C -0.130 4.130 11 C 0.009 3.991 12 O -0.270 6.270 13 C 0.342 3.658 14 O -0.415 6.415 15 C -0.157 4.157 16 C -0.081 4.081 17 C -0.137 4.137 18 C -0.079 4.079 19 C -0.145 4.145 20 C 0.088 3.912 21 N -0.303 5.303 22 C -0.019 4.019 23 C -0.148 4.148 24 C -0.188 4.188 25 C 0.308 3.692 26 O -0.466 6.466 27 H 0.074 0.926 28 H 0.012 0.988 29 H 0.017 0.983 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.189 0.811 36 H 0.195 0.805 37 H 0.171 0.829 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.010 -28.931 4.750 29.928 hybrid contribution -0.352 1.623 -0.257 1.680 sum 5.658 -27.308 4.493 28.247 Atomic orbital electron populations 1.70093 1.07931 1.28073 1.51263 1.26027 0.95806 1.03587 0.94468 0.85424 0.78204 0.77635 0.79337 1.19118 1.20833 1.18840 1.21585 0.93773 0.91802 1.51197 0.91598 1.18913 0.94198 0.92450 0.95385 1.21460 0.98771 0.90135 1.02601 1.23129 0.90916 0.83502 1.01545 1.86519 1.41746 1.14991 1.83711 1.21601 0.87610 0.83954 0.72657 1.90761 1.17068 1.87025 1.46613 1.19669 0.94533 0.89970 1.11566 1.21691 0.90398 1.01946 0.94094 1.21673 1.01940 0.91332 0.98722 1.21835 0.94142 0.98892 0.93037 1.21588 0.93941 0.98111 1.00894 1.17714 0.83504 0.91422 0.98587 1.45483 1.04480 1.71175 1.09123 1.22392 0.91943 1.01718 0.85807 1.22623 0.96381 1.02995 0.92830 1.22338 0.91204 1.05100 1.00127 1.21745 0.90631 0.73447 0.83354 1.90670 1.79372 1.53304 1.23237 0.92612 0.98800 0.98339 0.91084 0.91688 0.92723 0.91578 0.83664 0.81098 0.80520 0.82873 0.92315 0.87689 0.87094 0.87020 0.86172 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.50 4.97 29.85 0.15 1.65 16 10 C -0.09 -3.98 5.53 30.59 0.17 -3.81 16 11 C 0.08 3.29 5.48 71.98 0.39 3.69 16 12 O -0.35 -12.92 9.47 -56.60 -0.54 -13.45 16 13 C 0.50 17.62 7.89 70.23 0.55 18.18 16 14 O -0.52 -20.39 13.02 19.80 0.26 -20.13 16 15 C -0.15 -4.40 5.89 -20.00 -0.12 -4.52 16 16 C -0.06 -1.34 9.61 22.53 0.22 -1.13 16 17 C -0.12 -1.60 10.02 22.24 0.22 -1.38 16 18 C -0.06 -0.70 10.03 22.30 0.22 -0.48 16 19 C -0.13 -2.13 9.96 22.36 0.22 -1.91 16 20 C 0.18 4.49 5.37 38.62 0.21 4.70 16 21 N -0.57 -14.46 1.54 -626.96 -0.96 -15.43 16 22 C 0.10 1.77 6.89 86.83 0.60 2.37 16 23 C -0.11 -1.27 7.18 31.65 0.23 -1.04 16 24 C -0.15 -2.83 6.86 30.58 0.21 -2.62 16 25 C 0.52 15.28 7.06 87.90 0.62 15.90 16 26 O -0.59 -23.01 17.70 -3.04 -0.05 -23.06 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.15 3.01 7.61 -2.91 -0.02 2.99 16 35 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 37 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.06 1.28 7.34 -2.39 -0.02 1.26 16 39 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -81.94 367.90 6.61 -75.33 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.00 Total: 8.69 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 4.59 Total: -1.14 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -0.68 Total: -72.64 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -0.33 Total: -56.64 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -81.94 6.61 -75.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115837462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.338 kcal (2) G-P(sol) polarization free energy of solvation -81.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds