Wall clock time and date at job start Tue Mar 31 2020 11:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 120.00493 * 2 1 4 4 C 1.38214 * 120.07593 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.06444 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99533 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.47212 * 100.32257 * 6 5 4 8 8 C 1.36935 * 120.00025 * 275.47394 * 7 6 5 9 9 H 1.08002 * 120.00536 * 141.72212 * 8 7 6 10 10 C 1.38812 * 119.99799 * 321.71539 * 8 7 6 11 11 N 1.31618 * 119.99805 * 158.69709 * 10 8 7 12 12 Si 1.86798 * 120.00289 * 338.70190 * 10 8 7 13 13 H 1.48495 * 109.47144 * 95.20075 * 12 10 8 14 14 H 1.48494 * 109.47318 * 215.20590 * 12 10 8 15 15 H 1.48505 * 109.46889 * 335.20132 * 12 10 8 16 16 C 1.46499 * 120.00195 * 95.46988 * 7 6 5 17 17 C 1.50707 * 109.47117 * 90.00167 * 16 7 6 18 18 C 1.38233 * 119.99779 * 269.72931 * 17 16 7 19 19 C 1.38233 * 119.99918 * 180.32484 * 18 17 16 20 20 C 1.38233 * 119.99903 * 359.94462 * 19 18 17 21 21 C 1.38232 * 120.00002 * 0.03060 * 20 19 18 22 22 C 1.38230 * 120.00234 * 359.97438 * 21 20 19 23 23 C 1.38369 * 120.00456 * 0.25561 * 5 4 3 24 24 F 1.35100 * 120.03301 * 179.69983 * 23 5 4 25 25 C 1.38372 * 119.99958 * 180.02562 * 2 1 3 26 26 F 1.35105 * 120.03287 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.47167 * 89.99697 * 1 2 3 28 28 H 1.09001 * 109.47379 * 209.99995 * 1 2 3 29 29 H 1.08999 * 109.46983 * 330.00101 * 1 2 3 30 30 H 1.08003 * 119.95968 * 0.03786 * 3 2 1 31 31 H 1.07997 * 119.96715 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.47166 * 340.32214 * 6 5 4 33 33 H 1.09000 * 109.47159 * 220.32241 * 6 5 4 34 34 H 0.96997 * 120.00195 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.47206 * 330.00463 * 16 7 6 36 36 H 1.09000 * 109.47651 * 210.00112 * 16 7 6 37 37 H 1.08007 * 120.00364 * 0.26742 * 18 17 16 38 38 H 1.08007 * 120.00072 * 179.97438 * 19 18 17 39 39 H 1.07997 * 119.99765 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.99754 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.99978 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1990 -0.0005 5 6 4.2746 0.0033 -0.0016 6 6 5.7817 0.0070 -0.0028 7 7 6.2716 -0.2399 1.3555 8 6 6.3914 0.7990 2.2396 9 1 6.1417 0.6540 3.2803 10 6 6.8338 2.0384 1.7982 11 7 6.5643 3.1206 2.4973 12 14 7.8115 2.1707 0.2120 13 1 6.8944 2.4992 -0.9088 14 1 8.8315 3.2413 0.3470 15 1 8.4857 0.8765 -0.0632 16 6 6.6335 -1.5982 1.7682 17 6 8.0902 -1.8428 1.4692 18 6 8.4662 -2.3681 0.2471 19 6 9.8018 -2.5987 -0.0247 20 6 10.7615 -2.3029 0.9252 21 6 10.3855 -1.7771 2.1471 22 6 9.0499 -1.5466 2.4189 23 6 3.5857 -1.1967 -0.0075 24 9 4.2634 -2.3654 -0.0147 25 6 2.1988 -1.1983 -0.0005 26 9 1.5240 -2.3688 -0.0016 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6578 2.1323 0.0006 31 1 4.1188 2.1352 -0.0001 32 1 6.1423 0.9756 -0.3486 33 1 6.1464 -0.7753 -0.6684 34 1 6.8731 3.9867 2.1887 35 1 6.0246 -2.3183 1.2216 36 1 6.4581 -1.7119 2.8379 37 1 7.7164 -2.5992 -0.4952 38 1 10.0955 -3.0095 -0.9794 39 1 11.8050 -2.4827 0.7127 40 1 11.1353 -1.5465 2.8895 41 1 8.7562 -1.1362 3.3738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137970070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:39 Heat of formation + Delta-G solvation = -18.540525 kcal Electronic energy + Delta-G solvation = -26696.175764 eV Core-core repulsion = 22791.531456 eV Total energy + Delta-G solvation = -3904.644308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.10228 -48.18092 -38.98016 -38.59745 -36.01487 -32.83891 -32.10222 -30.54110 -30.36441 -29.90746 -28.12946 -25.87178 -24.75211 -22.58306 -22.05198 -22.00126 -21.17891 -20.06707 -17.48654 -17.17511 -16.73256 -16.32659 -16.11005 -15.98527 -15.26446 -14.80781 -14.70047 -14.43113 -14.30184 -14.14552 -14.07091 -13.34478 -13.30697 -12.96776 -12.91616 -12.78352 -12.57537 -12.38527 -12.22894 -12.00193 -11.54554 -11.37114 -11.35725 -11.05332 -10.73109 -10.66691 -10.51893 -10.31633 -10.07368 -9.67177 -8.69570 -8.39520 -8.34741 -8.31630 -8.14743 -7.03886 -6.12971 -3.55473 1.35029 1.35317 1.90735 1.94056 3.18601 3.39681 3.49434 3.72026 4.14187 4.30461 4.40766 4.66304 4.89127 5.01220 5.09822 5.26136 5.28683 5.34663 5.36723 5.40095 5.52114 5.58211 5.61724 5.67911 5.83702 5.88025 5.96746 6.06546 6.16834 6.20204 6.22003 6.32429 6.41609 6.51931 6.58476 6.60052 6.65065 6.82010 6.95834 7.00976 7.17793 7.29109 7.55848 7.89479 8.24618 8.80094 9.54871 9.93868 11.01362 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.005296 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.939740 B = 5286.184281 C = 6600.836545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.111 4.111 3 C -0.103 4.103 4 C -0.074 4.074 5 C -0.086 4.086 6 C 0.171 3.829 7 N -0.583 5.583 8 C -0.265 4.265 9 H 0.082 0.918 10 C 0.045 3.955 11 N -0.891 5.891 12 Si 0.864 3.136 13 H -0.284 1.284 14 H -0.300 1.300 15 H -0.260 1.260 16 C 0.172 3.828 17 C -0.080 4.080 18 C -0.119 4.119 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.097 4.097 23 C 0.074 3.926 24 F -0.131 7.131 25 C 0.054 3.946 26 F -0.137 7.137 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.265 0.735 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -7.123 -5.932 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.121 4.121 4 C -0.093 4.093 5 C -0.090 4.090 6 C 0.045 3.955 7 N -0.302 5.302 8 C -0.393 4.393 9 H 0.100 0.900 10 C -0.157 4.157 11 N -0.531 5.531 12 Si 0.693 3.307 13 H -0.212 1.212 14 H -0.228 1.228 15 H -0.184 1.184 16 C 0.047 3.953 17 C -0.082 4.082 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.144 4.144 22 C -0.116 4.116 23 C 0.054 3.946 24 F -0.109 7.109 25 C 0.034 3.966 26 F -0.116 7.116 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.351 -7.027 -5.859 10.131 hybrid contribution 0.773 -0.003 -0.846 1.146 sum -3.578 -7.031 -6.705 10.353 Atomic orbital electron populations 1.20663 0.90116 1.03211 1.02470 1.19660 0.96743 0.91219 1.03601 1.20936 0.94144 0.96827 1.00241 1.21071 0.93477 0.98072 0.96683 1.20912 0.99784 0.90584 0.97758 1.20215 0.86158 1.00690 0.88430 1.44135 1.71402 1.04337 1.10356 1.18784 1.39769 0.88223 0.92569 0.90033 1.25428 0.97229 0.95725 0.97302 1.69850 1.45123 0.97988 1.40143 0.87139 0.81228 0.78236 0.84051 1.21235 1.22768 1.18376 1.20207 0.88483 0.86937 0.99666 1.20945 0.98779 0.94986 0.93534 1.21000 0.95671 1.00238 0.96829 1.20994 0.93417 1.01446 0.98820 1.20948 0.98626 1.01631 0.94505 1.21095 0.96250 1.00109 0.96986 1.21085 0.92376 0.98275 0.99865 1.17457 0.87718 0.82315 1.07157 1.91432 1.79723 1.45719 1.94047 1.17423 0.88188 0.81854 1.09135 1.91447 1.79980 1.45771 1.94390 0.91056 0.91409 0.90874 0.84917 0.84442 0.91780 0.92317 0.92531 0.92155 0.91910 0.86984 0.87087 0.87130 0.86862 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.83 36.00 0.35 -0.84 16 2 C -0.11 -1.63 5.88 -104.57 -0.62 -2.25 16 3 C -0.10 -1.54 9.70 -39.58 -0.38 -1.93 16 4 C -0.07 -1.32 9.67 -39.58 -0.38 -1.71 16 5 C -0.09 -1.66 5.43 -104.56 -0.57 -2.23 16 6 C 0.17 3.56 4.53 -5.19 -0.02 3.54 16 7 N -0.58 -13.09 2.05 -175.98 -0.36 -13.45 16 8 C -0.27 -6.88 9.88 -15.06 -0.15 -7.03 16 9 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 10 C 0.04 1.21 5.34 -17.43 -0.09 1.11 16 11 N -0.89 -25.43 13.97 55.49 0.78 -24.66 16 12 Si 0.86 21.14 25.00 -169.99 -4.25 16.89 16 13 H -0.28 -6.61 6.69 56.52 0.38 -6.24 16 14 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 15 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.17 3.42 5.77 -5.19 -0.03 3.39 16 17 C -0.08 -1.53 5.46 -104.62 -0.57 -2.10 16 18 C -0.12 -2.10 9.70 -39.59 -0.38 -2.48 16 19 C -0.13 -2.06 10.05 -39.59 -0.40 -2.46 16 20 C -0.14 -2.17 10.05 -39.59 -0.40 -2.57 16 21 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 22 C -0.10 -1.82 9.70 -39.59 -0.38 -2.20 16 23 C 0.07 1.36 7.25 -39.37 -0.29 1.08 16 24 F -0.13 -2.41 14.49 2.25 0.03 -2.37 16 25 C 0.05 0.91 7.25 -39.37 -0.29 0.62 16 26 F -0.14 -2.26 16.39 2.25 0.04 -2.23 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.75 7.64 -51.93 -0.40 0.35 16 29 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 30 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.14 2.57 8.03 -52.49 -0.42 2.14 16 32 H 0.06 1.43 2.90 -51.93 -0.15 1.28 16 33 H 0.06 1.14 7.83 -51.93 -0.41 0.73 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.06 1.13 5.82 -51.93 -0.30 0.83 16 36 H 0.06 1.24 7.98 -51.93 -0.41 0.83 16 37 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -28.88 349.49 -8.55 -37.43 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.05 Total: 3.67 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -4.99 Total: -20.55 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.41 Total: -38.11 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.07 Total: -4.60 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.25 Total: 16.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.88 -8.55 -37.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137970070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.887 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds